Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 2.7e-263 911.4 439 100.0
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.2e-252 873.2 439 94.8
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-251 872.8 439 94.5
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 3.4e-250 867.8 434 94.7
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 1.6e-247 859.0 439 93.4
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-232 809.3 439 87.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.1e-231 805.4 435 86.9
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 4.0e-230 801.2 439 86.1
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.0e-230 801.2 436 87.2
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 6.8e-230 800.4 439 86.3
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 6.8e-230 800.4 450 84.9
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.8e-230 800.4 435 86.9
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 3.4e-229 798.1 439 85.2
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 4.4e-229 797.7 439 86.1
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 9.8e-229 796.6 439 85.6
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.7e-228 794.7 439 85.0
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 1.8e-227 792.3 435 85.1
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 1.8e-227 792.3 434 85.9
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 4.1e-227 791.2 497 77.5
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 9.1e-227 790.0 436 84.4
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.0e-226 788.9 435 83.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 2.7e-226 788.5 438 84.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-225 786.6 433 85.7
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.0e-225 786.6 433 85.5
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.0e-225 786.6 435 84.8
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 2.3e-225 785.4 434 85.5
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.3e-225 785.4 436 83.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 5.0e-225 784.3 434 85.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 5.0e-225 784.3 434 85.3
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 5.0e-225 784.3 436 84.9
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 5.0e-225 784.3 438 83.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.0e-225 784.3 428 86.9
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 8.6e-225 783.5 433 85.5
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 1.1e-224 783.1 436 83.9
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 1.5e-224 782.7 439 84.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 1.9e-224 782.3 434 85.0
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.5e-224 781.9 433 85.2
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 2.5e-224 781.9 435 83.7
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 4.2e-224 781.2 435 83.0
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 7.2e-224 780.4 437 84.0
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 9.5e-224 780.0 433 84.3
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 1.6e-223 779.2 439 83.8
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.1e-223 778.9 437 83.5
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.8e-223 778.5 427 85.7
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.6e-223 778.1 436 84.4
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 3.6e-223 778.1 439 83.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.4e-222 776.2 427 85.2
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.3e-222 775.4 439 83.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.0e-222 775.0 439 82.0
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 4.0e-222 774.6 439 82.2
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 8.9e-222 773.5 435 83.0
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.2e-221 773.1 439 83.1
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 1.5e-221 772.7 439 82.9
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 2.0e-221 772.3 439 82.7
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.0e-221 772.3 433 83.4
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-221 771.9 434 82.3
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 2.6e-221 771.9 434 82.3
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.4e-221 771.5 436 81.9
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.7e-221 770.8 439 81.1
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 5.7e-221 770.8 507 75.1
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 9.8e-221 770.0 439 81.3
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 1.3e-220 769.6 435 83.2
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.3e-220 769.6 429 83.2
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-220 768.5 442 82.8
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 8.3e-220 766.9 436 82.1
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 8.3e-220 766.9 439 82.7
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 1.1e-219 766.5 436 82.3
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.1e-219 765.0 437 82.8
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 4.1e-219 764.6 429 82.5
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.1e-219 764.6 445 81.6
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 7.0e-219 763.8 439 80.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.2e-218 763.1 439 81.5
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.6e-218 762.7 439 81.3
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 2.0e-218 762.3 522 73.6
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.3e-217 759.6 439 82.2
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 5.0e-217 757.7 473 76.5
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 6.6e-217 757.3 436 80.0
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 8.0e-215 750.4 439 78.8
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 6.8e-214 747.3 436 80.0
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 8.9e-214 746.9 435 79.3
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.9e-212 741.9 411 85.6
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 3.7e-212 741.5 434 80.0
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 4.9e-212 741.1 435 81.4
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 3.2e-211 738.4 420 83.8
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.0e-211 737.3 440 77.7
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 2.0e-210 735.7 433 79.4
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 8.6e-209 730.3 434 79.5
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.9e-208 729.2 434 79.3
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 5.6e-208 727.6 407 83.5
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 1.1e-206 723.4 439 75.6
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 1.2e-205 719.9 435 80.0
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.4e-205 718.4 402 83.3
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 4.9e-204 714.5 390 86.4
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 1.4e-203 713.0 410 82.7
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.3e-201 706.4 434 78.1
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 6.0e-194 681.0 434 73.5
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 1.9e-192 676.0 438 72.1
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 4.3e-192 674.9 427 74.2
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 1.4e-190 669.8 426 74.2
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.1e-190 668.7 440 70.2
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 1.3e-185 653.3 439 69.0
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.5e-184 649.8 436 73.9
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.2e-183 646.7 439 67.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 4.7e-183 644.8 427 70.3
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 4.4e-181 638.3 342 88.3
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 8.4e-180 634.0 330 89.7
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.9e-179 632.9 433 67.7
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 7.8e-178 627.5 341 85.6
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 1.5e-176 623.2 427 68.4
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.8e-174 616.3 339 85.5
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.6e-173 612.5 438 66.0
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 9.9e-173 610.5 390 75.4
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 2.3e-169 599.4 355 81.1
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.9e-168 596.3 440 69.5
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 9.9e-165 583.9 443 62.1
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 6.4e-164 581.3 444 61.3
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.2e-163 578.9 443 61.4
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.1e-161 571.6 439 62.9
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 7.1e-155 551.2 426 59.4
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.1e-150 537.3 296 85.8
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 5.0e-148 528.5 337 73.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.2e-147 525.8 354 70.6
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 9.7e-144 514.2 431 57.1
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.4e-141 505.8 381 67.2
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 2.0e-133 479.9 442 53.2
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.2e-120 437.6 224 92.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 3.6e-114 416.0 352 60.5
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.6e-106 390.6 235 78.3
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 2.3e-92 343.6 228 70.6
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-78 296.6 192 69.8
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.6e-74 284.3 158 85.4
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.1e-74 282.0 151 84.8
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 6.4e-71 272.3 145 87.6
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 7.3e-67 258.8 197 67.5
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.1e-65 253.4 134 89.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.7e-60 237.7 235 56.6
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 8.7e-52 208.8 113 85.0
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.5e-48 198.0 107 80.4
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.1e-42 177.6 137 65.0
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.7e-37 160.6 88 85.2
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 8.2e-34 149.1 93 74.2
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 9.0e-33 145.6 204 41.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 6.5e-31 139.4 82 80.5
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 3.2e-30 137.1 165 46.1
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 5.7e-27 126.3 87 73.6
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 3.4e-24 117.1 80 65.0
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.9e-22 111.3 246 33.3
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 4.2e-22 110.2 63 82.5
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 2.3e-20 104.4 57 77.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 2.6e-19 100.9 72 61.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 2.0e-16 91.3 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 7.2e-14 82.8 96 47.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 8.0e-13 79.3 38 86.8
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 5.7e-11 73.2 35 91.4
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.8e-10 70.9 98 43.9
Os01g0560000 Oryza sativa ssp. japonica HOM05D000617 ORTHO05D000478 7.7e-08 62.8 234 26.5
PSO210G6674 Papaver somniferum HOM05D000617 ORTHO05D000478 2.9e-07 60.8 234 26.1
SHI07377 Sapria himalayana HOM05D004850 ORTHO05D005971 6.5e-07 59.7 35 74.3
Hma1.2p1_2649F.1_g326132 Hydrangea macrophylla HOM05D000617 ORTHO05D000478 8.5e-07 59.3 327 25.1
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 1.5e-06 58.5 69 50.7


User provided reference genes

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