Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G138.7 Capsicum annuum HOM05D004301 ORTHO05D005124 1.2e-80 303.1 158 100.0
Sopen02g025120 Solanum pennellii HOM05D004301 ORTHO05D005124 5.6e-33 144.8 132 62.9
PGSC0003DMG400016459 Solanum tuberosum HOM05D004301 ORTHO05D005124 5.6e-33 144.8 132 62.9
Nitab4.5_0007482g0040 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.2e-32 143.7 132 62.1
Solyc02g080430.3 Solanum lycopersicum HOM05D004301 ORTHO05D005124 1.6e-32 143.3 132 62.1
CAN.G1175.8 Capsicum annuum HOM05D004301 ORTHO05D005124 4.7e-32 141.7 132 62.1
Nitab4.5_0007007g0030 Nicotiana tabacum HOM05D004301 ORTHO05D005124 4.7e-32 141.7 132 61.4
Peaxi162Scf00595g00039 Petunia axillaris HOM05D004301 ORTHO05D005124 8.9e-31 137.5 133 60.9
Rhsim13G0155100 Rhododendron simsii HOM05D004301 ORTHO05D005124 5.4e-28 128.3 132 56.1
vmacro03693 Vaccinium macrocarpon HOM05D004301 ORTHO05D005124 1.6e-27 126.7 130 56.2
Cpa.g.sc198.42 Carica papaya HOM05D004301 ORTHO05D005124 2.0e-27 126.3 132 56.8
Thecc.06G088100 Theobroma cacao HOM05D004301 ORTHO05D005124 1.3e-26 123.6 132 56.1
Duzib235G0809 Durio zibethinus HOM05D004301 ORTHO05D005124 2.3e-26 122.9 163 49.1
Gohir.D06G153800 Gossypium hirsutum HOM05D004301 ORTHO05D005124 2.3e-26 122.9 132 56.1
Gorai.010G179800 Gossypium raimondii HOM05D004301 ORTHO05D005124 2.3e-26 122.9 132 56.1
Rhsim08G0082200 Rhododendron simsii HOM05D004301 ORTHO05D005124 2.3e-26 122.9 132 53.8
Gohir.A06G147900 Gossypium hirsutum HOM05D004301 ORTHO05D005124 3.0e-26 122.5 132 56.1
TAR629G3276 Trochodendron aralioides HOM05D004301 ORTHO05D005124 3.0e-26 122.5 141 51.8
Ciclev10017125m.g Citrus clementina HOM05D004301 ORTHO05D005124 8.6e-26 120.9 130 55.4
Dinv18010 Davidia involucrata HOM05D004301 ORTHO05D005124 8.6e-26 120.9 156 47.4
Lj1A1229G41 Lonicera japonica HOM05D004301 ORTHO05D005124 1.1e-25 120.6 133 53.4
Hund21400 Selenicereus undatus HOM05D004301 ORTHO05D005124 1.1e-25 120.6 130 53.1
Atru.chr10.2203 Acer truncatum HOM05D004301 ORTHO05D005124 2.5e-25 119.4 131 55.0
CSS0003131 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 2.5e-25 119.4 141 50.4
CsaV3_4G017560 Cucumis sativus L. HOM05D004301 ORTHO05D005124 4.3e-25 118.6 132 53.0
TAR626G0955 Trochodendron aralioides HOM05D004301 ORTHO05D005124 4.3e-25 118.6 132 53.8
MELO3C014729.2 Cucumis melo HOM05D004301 ORTHO05D005124 5.6e-25 118.2 132 53.0
CSS0040354 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 7.3e-25 117.9 141 49.6
Oeu033197.1 Olea europaea HOM05D004301 ORTHO05D005124 7.3e-25 117.9 133 52.6
Phvul.007G037700 Phaseolus vulgaris HOM05D004301 ORTHO05D005124 7.3e-25 117.9 129 53.5
Psat3g175280 Pisum sativum HOM05D004301 ORTHO05D005124 9.5e-25 117.5 131 50.4
COL.COLO4_28865 Corchorus olitorius HOM05D004301 ORTHO05D005124 1.2e-24 117.1 132 53.8
CSS0019231 Camellia sinensis var. sinensis HOM05D004301 ORTHO05D005124 1.6e-24 116.7 141 49.6
CiPaw.09G090400 Carya illinoinensis HOM05D004301 ORTHO05D005124 1.6e-24 116.7 135 54.1
SalBow8G0640 Salvia bowleyana HOM05D004301 ORTHO05D005124 1.6e-24 116.7 132 50.8
Sc05g0009100 Simmondsia chinensis HOM05D004301 ORTHO05D005124 1.6e-24 116.7 133 51.9
MSTRG.7223 Avicennia marina HOM05D004301 ORTHO05D005124 2.1e-24 116.3 133 52.6
PSO339G4464 Papaver somniferum HOM05D004301 ORTHO05D005124 3.6e-24 115.5 141 46.8
PSO384G5030 Papaver somniferum HOM05D004301 ORTHO05D005124 3.6e-24 115.5 141 46.8
TWI63G1781 Tripterygium wilfordii HOM05D004301 ORTHO05D005124 6.2e-24 114.8 132 51.5
Cfa000237 Carpinus fangiana HOM05D004301 ORTHO05D005124 8.0e-24 114.4 132 50.8
Oeu037360.1 Olea europaea HOM05D004301 ORTHO05D005124 8.0e-24 114.4 135 57.0
Sabra04G0009400 Salix brachista HOM05D004301 ORTHO05D005124 8.0e-24 114.4 130 53.8
SGA_v2.0_scaffold4G01921 Striga asiatica HOM05D004301 ORTHO05D005124 8.0e-24 114.4 136 50.7
THA.LOC104806300 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.0e-24 114.4 133 51.9
Manes.03G210700 Manihot esculenta HOM05D004301 ORTHO05D005124 1.0e-23 114.0 130 54.6
RcHm_v2.0_Chr5g0030661 Rosa chinensis HOM05D004301 ORTHO05D005124 1.0e-23 114.0 141 48.2
FAN16G3380 Fragaria x ananassa HOM05D004301 ORTHO05D005124 1.4e-23 113.6 141 48.2
Sp6g04160 Schrenkiella parvula HOM05D004301 ORTHO05D005124 1.8e-23 113.2 133 51.1
Haze_06785 Corylus avellana HOM05D004301 ORTHO05D005124 2.3e-23 112.8 132 50.0
Glyma.10G264300 Glycine max HOM05D004301 ORTHO05D005124 2.3e-23 112.8 131 54.2
Potri.004G017100 Populus trichocarpa HOM05D004301 ORTHO05D005124 2.3e-23 112.8 130 53.8
Prupe.4G022700 Prunus persica HOM05D004301 ORTHO05D005124 2.3e-23 112.8 132 50.8
Carub.0006s3270 Capsella rubella HOM05D004301 ORTHO05D005124 3.1e-23 112.5 133 51.1
Manes.09G000400 Manihot esculenta HOM05D004301 ORTHO05D005124 3.1e-23 112.5 130 54.6
Aqoxy3G02575 Aquilegia oxysepala HOM05D004301 ORTHO05D005124 6.8e-23 111.3 150 46.0
arahy.Tifrunner.gnm1.ann1.0XE69C Arachis hypogaea HOM05D004301 ORTHO05D005124 6.8e-23 111.3 130 51.5
Lj5g0024394 Lotus japonicus HOM05D004301 ORTHO05D005124 6.8e-23 111.3 129 51.2
AT4G04780 Arabidopsis thaliana HOM05D004301 ORTHO05D005124 8.9e-23 110.9 133 51.1
arahy.Tifrunner.gnm1.ann1.210EWG Arachis hypogaea HOM05D004301 ORTHO05D005124 8.9e-23 110.9 130 51.5
Migut.M01306 Erythranthe guttata HOM05D004301 ORTHO05D005124 8.9e-23 110.9 133 48.9
ATR0752G175 Amborella trichopoda HOM05D004301 ORTHO05D005124 1.2e-22 110.5 134 52.2
CARHR252750 Cardamine hirsuta HOM05D004301 ORTHO05D005124 1.2e-22 110.5 134 50.0
Cc00_g00410 Coffea canephora HOM05D004301 ORTHO05D005124 1.2e-22 110.5 162 46.3
FvH4_3g18180 Fragaria vesca HOM05D004301 ORTHO05D005124 2.0e-22 109.8 141 47.5
Lsat_1_v5_gn_1_128621 Lactuca sativa HOM05D004301 ORTHO05D005124 2.0e-22 109.8 170 44.1
HPP92_021475 Vanilla planifolia HOM05D004301 ORTHO05D005124 2.0e-22 109.8 134 52.2
arahy.Tifrunner.gnm1.ann1.6J361A Arachis hypogaea HOM05D004301 ORTHO05D005124 2.6e-22 109.4 130 50.8
Cc03_g13960 Coffea canephora HOM05D004301 ORTHO05D005124 2.6e-22 109.4 135 51.1
Lj2g0004276 Lotus japonicus HOM05D004301 ORTHO05D005124 2.6e-22 109.4 129 50.4
TPR.G23756 Trifolium pratense HOM05D004301 ORTHO05D005124 2.6e-22 109.4 131 48.9
AL6G48270 Arabidopsis lyrata HOM05D004301 ORTHO05D005124 5.8e-22 108.2 133 49.6
CANSAT56G0804 Cannabis sativa HOM05D004301 ORTHO05D005124 5.8e-22 108.2 134 49.3
Medtr7g037020 Medicago truncatula HOM05D004301 ORTHO05D005124 5.8e-22 108.2 129 49.6
PGR004G0513 Punica granatum HOM05D004301 ORTHO05D005124 5.8e-22 108.2 135 48.9
FAN25G1723 Fragaria x ananassa HOM05D004301 ORTHO05D005124 7.5e-22 107.8 141 46.1
Ca_26119_v3 Cicer arietinum L. HOM05D004301 ORTHO05D005124 9.8e-22 107.5 131 48.1
ECA248G0561 Erigeron canadensis HOM05D004301 ORTHO05D005124 9.8e-22 107.5 140 47.1
RcHm_v2.0_Chr5g0030681 Rosa chinensis HOM05D004301 ORTHO05D005124 9.8e-22 107.5 141 46.8
Lalb_Chr17g0338691 Lupinus albus HOM05D004301 ORTHO05D005124 1.3e-21 107.1 130 50.8
PSO170G5652 Papaver somniferum HOM05D004301 ORTHO05D005124 1.3e-21 107.1 144 43.1
FAN12G2174 Fragaria x ananassa HOM05D004301 ORTHO05D005124 2.9e-21 105.9 135 48.9
FAN07G2330 Fragaria x ananassa HOM05D004301 ORTHO05D005124 6.4e-21 104.8 135 48.9
QL05p073536 Quercus lobata HOM05D004301 ORTHO05D005124 6.4e-21 104.8 136 48.5
unitig_748.g7577 Utricularia gibba HOM05D004301 ORTHO05D005124 6.4e-21 104.8 133 48.1
THA.LOC104813057 Tarenaya hassleriana HOM05D004301 ORTHO05D005124 8.3e-21 104.4 133 46.6
MBI16_g31789_MAGBIO Magnolia biondii HOM05D004301 ORTHO05D005124 1.1e-20 104.0 146 45.2
QL05p073775 Quercus lobata HOM05D004301 ORTHO05D005124 1.1e-20 104.0 136 48.5
VMungo0720G3170 Vigna mungo HOM05D004301 ORTHO05D005124 2.4e-20 102.8 182 37.9
BcaB01g01837 Brassica carinata HOM05D004301 ORTHO05D005124 3.2e-20 102.4 142 46.5
A09p26100 Brassica napus HOM05D004301 ORTHO05D005124 4.1e-20 102.1 144 46.5
BraA09t38177Z Brassica rapa HOM05D004301 ORTHO05D005124 4.1e-20 102.1 144 46.5
CDE05G1190 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 7.0e-20 101.3 130 49.2
HanXRQChr10g0285201 Helianthus annuus HOM05D004301 ORTHO05D005124 9.2e-20 100.9 153 42.5
C02p40060 Brassica napus HOM05D004301 ORTHO05D005124 2.0e-19 99.8 128 49.2
CDE04G1315 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 2.0e-19 99.8 130 48.5
BolC9t56147H Brassica oleracea HOM05D004301 ORTHO05D005124 3.5e-19 99.0 145 44.8
RcHm_v2.0_Chr4g0426811 Rosa chinensis HOM05D004301 ORTHO05D005124 6.0e-19 98.2 137 46.7
BcaC04g21325 Brassica carinata HOM05D004301 ORTHO05D005124 7.8e-19 97.8 148 43.9
C09p33120 Brassica napus HOM05D004301 ORTHO05D005124 7.8e-19 97.8 148 43.9
ClCG02G024420 Citrullus lanatus HOM05D005410 ORTHO05D007394 7.8e-19 97.8 93 55.9
Aa31LG9G9690 Aethionema arabicum HOM05D004301 ORTHO05D005124 1.3e-18 97.1 131 46.6
Cc00_g35050 Coffea canephora HOM05D004301 ORTHO05D005124 1.7e-18 96.7 136 47.8
FvH4_4g21200 Fragaria vesca HOM05D004301 ORTHO05D005124 1.7e-18 96.7 139 45.3
MD10G1319700 Malus domestica HOM05D004301 ORTHO05D005124 1.7e-18 96.7 155 43.2
DCAR_008141 Daucus carota HOM05D004301 ORTHO05D005124 2.3e-18 96.3 134 47.0
A02p25250 Brassica napus HOM05D004301 ORTHO05D005124 3.0e-18 95.9 128 46.9
Nn7g37600 Nelumbo nucifera HOM05D004301 ORTHO05D005124 3.9e-18 95.5 81 64.2
BolC2t10033H Brassica oleracea HOM05D004301 ORTHO05D005124 1.1e-17 94.0 128 47.7
SEGI_29072 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 1.1e-17 94.0 130 46.2
Actinidia26923 Actinidia chinensis HOM05D004301 ORTHO05D005124 1.9e-17 93.2 113 53.1
BraA02t07511Z Brassica rapa HOM05D004301 ORTHO05D005124 5.6e-17 91.7 128 46.9
PSO478G1674 Papaver somniferum HOM05D004301 ORTHO05D005124 1.2e-16 90.5 130 42.3
BcaB05g23708 Brassica carinata HOM05D004301 ORTHO05D005124 3.6e-16 89.0 134 43.3
Mapoly0013s0130 Marchantia polymorpha HOM05D004301 ORTHO05D005124 6.2e-16 88.2 131 42.0
Oeu033198.1 Olea europaea HOM05D004301 ORTHO05D005124 8.1e-16 87.8 89 53.9
EL10Ac8g20032 Beta vulgaris HOM05D004301 ORTHO05D005124 1.8e-15 86.7 159 39.0
PSO017G1667 Papaver somniferum HOM05D004301 ORTHO05D005124 1.8e-15 86.7 106 43.4
Ah.09g234990 Amaranthus hybridus HOM05D004301 ORTHO05D005124 2.3e-15 86.3 167 37.1
SEGI_24906 Sequoiadendron giganteum HOM05D004301 ORTHO05D005124 4.0e-15 85.5 160 38.1
Psat5g160160 Pisum sativum HOM05D004301 ORTHO05D005124 1.5e-14 83.6 79 55.7
BcaC03g16233 Brassica carinata HOM05D004301 ORTHO05D005124 2.6e-14 82.8 108 48.1
Psat5g160080 Pisum sativum HOM05D004301 ORTHO05D005124 2.6e-14 82.8 79 55.7
arahy.Tifrunner.gnm1.ann1.RW8N71 Arachis hypogaea HOM05D004301 ORTHO05D005124 7.5e-14 81.3 79 57.0
Nitab4.5_0003254g0090 Nicotiana tabacum HOM05D004301 ORTHO05D005124 6.4e-13 78.2 47 76.6
Pp3c1_16690 Physcomitrium patens HOM05D004301 ORTHO05D005124 1.9e-12 76.6 139 33.8
AUR62012686 Chenopodium quinoa HOM05D004301 ORTHO05D005124 4.1e-12 75.5 128 39.8
FAN20G0317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 4.1e-12 75.5 90 46.7
FAN21G3317 Fragaria x ananassa HOM05D004301 ORTHO05D005124 5.4e-12 75.1 70 52.9
AagrBONN_evm.TU.Sc2ySwM_362.2472 Anthoceros agrestis HOM05D004301 ORTHO05D005124 9.2e-12 74.3 143 37.1
Duzib192G0451 Durio zibethinus HOM05D004301 ORTHO05D005124 9.2e-12 74.3 81 54.3
unitig_32.g11531 Utricularia gibba HOM05D004301 ORTHO05D005124 9.2e-12 74.3 84 50.0
Medtr1g107580 Medicago truncatula HOM05D004301 ORTHO05D005124 1.2e-11 73.9 77 51.9
BcaC03g16234 Brassica carinata HOM05D004301 ORTHO05D005124 2.7e-11 72.8 86 50.0
Zm00001eb173130 Zea mays HOM05D004301 ORTHO05D005124 1.0e-10 70.9 160 36.2
Nitab4.5_0003254g0080 Nicotiana tabacum HOM05D004301 ORTHO05D005124 1.1e-09 67.4 84 52.4
CDE05G0994 Ceratophyllum demersum HOM05D004301 ORTHO05D005124 4.3e-09 65.5 125 38.4
RcHm_v2.0_Chr4g0426791 Rosa chinensis HOM05D004301 ORTHO05D005124 6.2e-08 61.6 65 52.3
Prupe.1G108500 Prunus persica HOM05D004301 ORTHO05D005124 8.1e-08 61.2 99 41.4
SMO200G0228 Selaginella moellendorffii HOM05D004301 ORTHO05D005124 1.5e-06 57.0 147 32.7
A06p38190 Brassica napus HOM05D004301 ORTHO05D005124 3.4e-06 55.8 55 52.7
BraA06t26734Z Brassica rapa HOM05D004301 ORTHO05D005124 3.4e-06 55.8 55 52.7
Gorai.001G171600 Gossypium raimondii HOM05D001075 ORTHO05D001779 3.4e-06 55.8 102 42.2


User provided reference genes

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