Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1379.23 Capsicum annuum HOM05D005167 ORTHO05D006312 1.1e-311 1072.4 536 100.0
Sopen01g045080 Solanum pennellii HOM05D005167 ORTHO05D006312 6.8e-232 807.4 485 84.5
Solyc01g102670.3 Solanum lycopersicum HOM05D005167 ORTHO05D006312 1.8e-229 799.3 485 84.1
PGSC0003DMG400018222 Solanum tuberosum HOM05D005167 ORTHO05D006312 2.0e-228 795.8 488 83.8
Nitab4.5_0004176g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 3.6e-225 785.0 482 82.4
Nitab4.5_0001085g0040 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.5e-223 779.6 492 81.3
Peaxi162Scf00194g00934 Petunia axillaris HOM05D005167 ORTHO05D006312 1.2e-212 743.4 495 75.6
Dinv24548 Davidia involucrata HOM05D000457 ORTHO05D000560 5.7e-146 521.9 509 55.8
Hma1.2p1_0052F.1_g030120 Hydrangea macrophylla HOM05D005167 ORTHO05D006312 1.4e-144 517.3 483 58.6
Lj9C241G5 Lonicera japonica HOM05D005167 ORTHO05D006312 1.6e-140 503.8 472 58.5
Oeu000168.1 Olea europaea HOM05D005167 ORTHO05D006312 4.5e-135 485.7 465 57.6
SalBow3G4053 Salvia bowleyana HOM05D005167 ORTHO05D006312 1.8e-131 473.8 461 56.0
Cc02_g36800 Coffea canephora HOM05D005167 ORTHO05D006312 2.6e-130 469.9 449 56.1
Rhsim05G0120900 Rhododendron simsii HOM05D005167 ORTHO05D006312 3.1e-128 463.0 484 56.0
vmacro19812 Vaccinium macrocarpon HOM05D005167 ORTHO05D006312 2.6e-127 459.9 487 55.0
SGA_v2.0_scaffold401G50971 Striga asiatica HOM05D005167 ORTHO05D006312 7.7e-127 458.4 476 54.4
Atru.chr6.56 Acer truncatum HOM05D005167 ORTHO05D006312 2.9e-126 456.4 469 53.9
ECA248G1565 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.5e-126 455.3 474 53.8
Migut.N00879 Erythranthe guttata HOM05D005167 ORTHO05D006312 5.5e-125 452.2 467 54.2
Nn5g27095 Nelumbo nucifera HOM05D005167 ORTHO05D006312 1.2e-124 451.1 491 51.7
DCAR_029460 Daucus carota HOM05D005167 ORTHO05D006312 1.0e-123 448.0 477 51.6
QL02p104239 Quercus lobata HOM05D005167 ORTHO05D006312 1.0e-123 448.0 477 53.7
Haze_09951 Corylus avellana HOM05D005167 ORTHO05D006312 5.7e-122 442.2 481 53.4
PGR042G3689 Punica granatum HOM05D005167 ORTHO05D006312 9.1e-120 434.9 492 49.4
Ciclev10001110m.g Citrus clementina HOM05D005167 ORTHO05D006312 2.7e-119 433.3 467 52.0
Thecc.06G025200 Theobroma cacao HOM05D005167 ORTHO05D006312 1.0e-118 431.4 475 52.4
HanXRQChr15g0488451 Helianthus annuus HOM05D005167 ORTHO05D006312 3.2e-117 426.4 481 51.4
arahy.Tifrunner.gnm1.ann1.JG47X3 Arachis hypogaea HOM05D005167 ORTHO05D006312 3.6e-116 422.9 456 52.6
CiPaw.09G096800 Carya illinoinensis HOM05D005167 ORTHO05D006312 6.1e-116 422.2 444 55.2
EL10Ac6g13938 Beta vulgaris HOM05D005167 ORTHO05D006312 1.0e-115 421.4 449 51.9
Sc07g0003350 Simmondsia chinensis HOM05D005167 ORTHO05D006312 5.2e-115 419.1 442 51.4
Sc07g0003360 Simmondsia chinensis HOM05D005167 ORTHO05D006312 5.2e-115 419.1 442 51.4
Gohir.D05G124100 Gossypium hirsutum HOM05D005167 ORTHO05D006312 8.8e-115 418.3 480 50.0
Gorai.009G128100 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.0e-114 417.2 487 49.9
Potri.003G046300 Populus trichocarpa HOM05D005167 ORTHO05D006312 1.3e-113 414.5 443 52.6
Ah.02g128610 Amaranthus hybridus HOM05D005167 ORTHO05D006312 2.8e-113 413.3 482 49.6
arahy.Tifrunner.gnm1.ann1.T4BBUF Arachis hypogaea HOM05D005167 ORTHO05D006312 2.8e-113 413.3 456 51.8
Manes.06G015900 Manihot esculenta HOM05D005167 ORTHO05D006312 2.8e-113 413.3 443 52.6
TWI23G0323 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.5e-111 406.0 463 51.2
Hund15261 Selenicereus undatus HOM05D005167 ORTHO05D006312 2.9e-110 403.3 451 50.8
Lj6g0014124 Lotus japonicus HOM05D005167 ORTHO05D006312 2.5e-109 400.2 464 50.9
Sabra03G0019800 Salix brachista HOM05D005167 ORTHO05D006312 1.6e-108 397.5 487 49.1
Glyma.09G018700 Glycine max HOM05D005167 ORTHO05D006312 2.8e-108 396.7 446 51.3
Duzib160G0520 Durio zibethinus HOM05D005167 ORTHO05D006312 2.2e-105 387.1 432 51.6
CANSAT01G2096 Cannabis sativa HOM05D005167 ORTHO05D006312 2.4e-104 383.6 497 47.5
Phvul.006G133500 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 1.2e-103 381.3 465 49.0
VMungo0540G0564 Vigna mungo HOM05D005167 ORTHO05D006312 1.5e-101 374.4 453 48.3
HPP92_025056 Vanilla planifolia HOM05D005167 ORTHO05D006312 1.9e-101 374.0 459 44.2
PSO170G3824 Papaver somniferum HOM05D005167 ORTHO05D006312 2.5e-101 373.6 444 49.3
Gohir.A05G123200 Gossypium hirsutum HOM05D005167 ORTHO05D006312 1.6e-100 370.9 430 49.5
Os07g0657600 Oryza sativa ssp. japonica HOM05D005167 ORTHO05D006312 1.4e-99 367.9 469 46.3
THA.LOC104809040 Tarenaya hassleriana HOM05D005167 ORTHO05D006312 3.4e-98 363.2 520 43.5
ATR0782G113 Amborella trichopoda HOM05D005167 ORTHO05D006312 2.7e-95 353.6 449 47.2
Eucgr.G00036 Eucalyptus grandis HOM05D005167 ORTHO05D006312 1.5e-93 347.8 400 50.0
Atru.chr6.45 Acer truncatum HOM05D005167 ORTHO05D006312 7.0e-88 328.9 448 46.2
AUR62024866 Chenopodium quinoa HOM05D005167 ORTHO05D006312 1.7e-86 324.3 399 48.9
Actinidia12290 Actinidia chinensis HOM05D005167 ORTHO05D006312 2.2e-81 307.4 455 42.0
Dinv01746 Davidia involucrata HOM05D005167 ORTHO05D006312 6.2e-76 289.3 466 38.2
Thecc.07G187300 Theobroma cacao HOM05D005167 ORTHO05D006312 1.1e-75 288.5 452 39.2
Oeu000169.3 Olea europaea HOM05D005167 ORTHO05D006312 3.8e-73 280.0 319 49.5
Nn3g20631 Nelumbo nucifera HOM05D005167 ORTHO05D006312 5.1e-70 269.6 452 37.2
Duzib116G0260 Durio zibethinus HOM05D005167 ORTHO05D006312 7.6e-66 255.8 457 35.9
Atru.chr9.69 Acer truncatum HOM05D005167 ORTHO05D006312 2.2e-65 254.2 472 35.0
QL93p0255_0001 Quercus lobata HOM05D005167 ORTHO05D006312 8.4e-65 252.3 342 46.2
Cpa.g.sc15.42 Carica papaya HOM05D005167 ORTHO05D006312 3.2e-64 250.4 448 36.2
CANSAT64G2797 Cannabis sativa HOM05D005167 ORTHO05D006312 9.3e-64 248.8 458 36.0
Aqoxy4G01544 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 4.6e-63 246.5 495 33.9
FAN19G3173 Fragaria x ananassa HOM05D005167 ORTHO05D006312 4.6e-63 246.5 459 37.9
CiPaw.15G107300 Carya illinoinensis HOM05D005167 ORTHO05D006312 7.8e-63 245.7 442 35.1
Sed0010261 Sechium edule HOM05D005167 ORTHO05D006312 2.3e-62 244.2 454 37.2
Gohir.D09G002700 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.9e-62 243.4 450 34.9
FAN26G1264 Fragaria x ananassa HOM05D005167 ORTHO05D006312 8.7e-62 242.3 459 37.5
MD00G1096100 Malus domestica HOM05D005167 ORTHO05D006312 8.7e-62 242.3 473 37.6
RcHm_v2.0_Chr3g0496761 Rosa chinensis HOM05D005167 ORTHO05D006312 3.3e-61 240.4 482 36.3
SpUn0422_0010 Schrenkiella parvula HOM05D005167 ORTHO05D006312 1.1e-59 235.3 436 34.6
A03p66890 Brassica napus HOM05D005167 ORTHO05D006312 3.1e-59 233.8 435 34.5
BraA01t02792Z Brassica rapa HOM05D005167 ORTHO05D006312 3.1e-59 233.8 435 34.5
BcaB03g16877 Brassica carinata HOM05D005167 ORTHO05D006312 6.9e-59 232.6 435 33.8
C07p02160 Brassica napus HOM05D005167 ORTHO05D006312 6.9e-59 232.6 435 34.3
BolC7t40625H Brassica oleracea HOM05D005167 ORTHO05D006312 6.9e-59 232.6 435 34.3
Thhalv10028036m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 7.6e-58 229.2 433 33.9
Carub.0003s3540 Capsella rubella HOM05D005167 ORTHO05D006312 3.8e-57 226.9 441 32.9
CiPaw.15G107200 Carya illinoinensis HOM05D005167 ORTHO05D006312 3.8e-57 226.9 391 36.3
CARHR046110 Cardamine hirsuta HOM05D005167 ORTHO05D006312 2.7e-55 220.7 433 32.6
TAR629G0123 Trochodendron aralioides HOM05D005167 ORTHO05D006312 6.0e-55 219.5 421 36.1
Manes.18G143300 Manihot esculenta HOM05D005167 ORTHO05D006312 1.3e-54 218.4 373 39.4
SGA_v2.0_scaffold150G36624 Striga asiatica HOM05D005167 ORTHO05D006312 2.3e-54 217.6 463 33.9
Lju225A7G63 Lonicera japonica HOM05D005167 ORTHO05D006312 4.3e-53 213.4 452 34.5
ClCG04G000020 Citrullus lanatus HOM05D005167 ORTHO05D006312 1.6e-52 211.5 451 33.5
Prupe.4G287800 Prunus persica HOM05D005167 ORTHO05D006312 2.8e-52 210.7 370 37.3
ClCG08G000010 Citrullus lanatus HOM05D005167 ORTHO05D006312 8.1e-52 209.1 452 33.6
MBI17_g35115_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 1.8e-51 208.0 183 59.6
Lsat_1_v5_gn_8_167100 Lactuca sativa HOM05D005167 ORTHO05D006312 3.1e-51 207.2 431 33.9
Glyma.13G026000 Glycine max HOM05D005167 ORTHO05D006312 7.6e-50 202.6 399 33.8
Manes.18G143000 Manihot esculenta HOM05D005167 ORTHO05D006312 4.2e-48 196.8 437 32.7
GSVIVG01029417001 Vitis vinifera HOM05D005167 ORTHO05D006312 1.2e-47 195.3 362 35.4
TWI31G1352 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 1.0e-46 192.2 348 36.8
MELO3C034515.2 Cucumis melo HOM05D005167 ORTHO05D006312 6.7e-46 189.5 460 33.0
Actinidia01647 Actinidia chinensis HOM05D005167 ORTHO05D006312 1.5e-45 188.3 130 68.5
Gorai.006G003300 Gossypium raimondii HOM05D005167 ORTHO05D006312 5.6e-45 186.4 352 33.5
Cc00_g01280 Coffea canephora HOM05D005167 ORTHO05D006312 3.7e-44 183.7 386 32.4
Ciclev10030405m.g Citrus clementina HOM05D005167 ORTHO05D006312 4.8e-44 183.3 399 31.6
CAN.G989.3 Capsicum annuum HOM05D005167 ORTHO05D006312 7.6e-42 176.0 379 30.6
BcaC08g44461 Brassica carinata HOM05D005167 ORTHO05D006312 1.3e-41 175.3 372 30.9
CDE02G4394 Ceratophyllum demersum HOM05D003845 ORTHO05D004161 1.3e-41 175.3 199 46.2
COL.COLO4_11943 Corchorus olitorius HOM05D005167 ORTHO05D006312 6.5e-41 172.9 234 43.2
Gohir.A09G002900 Gossypium hirsutum HOM05D005167 ORTHO05D006312 3.2e-40 170.6 325 33.2
PGSC0003DMG400014526 Solanum tuberosum HOM05D005167 ORTHO05D006312 3.2e-40 170.6 412 30.1
Sopen02g001190 Solanum pennellii HOM05D005167 ORTHO05D006312 4.2e-40 170.2 376 30.9
Nitab4.5_0005690g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 4.6e-39 166.8 377 30.5
HanXRQChr12g0386151 Helianthus annuus HOM05D005167 ORTHO05D006312 6.0e-39 166.4 448 28.6
Phvul.L001673 Phaseolus vulgaris HOM05D005167 ORTHO05D006312 6.0e-39 166.4 384 32.8
Lju225C0G3 Lonicera japonica HOM05D005167 ORTHO05D006312 1.0e-38 165.6 437 31.6
FvH4_1g27954 Fragaria vesca HOM05D005167 ORTHO05D006312 8.2e-36 156.0 163 52.1
QL07p001518 Quercus lobata HOM05D005167 ORTHO05D006312 4.1e-35 153.7 280 39.3
TWI15G0790 Tripterygium wilfordii HOM05D005167 ORTHO05D006312 4.1e-35 153.7 164 49.4
QL93p1868_0059 Quercus lobata HOM05D005167 ORTHO05D006312 1.2e-34 152.1 162 45.1
CDE02G1408 Ceratophyllum demersum HOM05D005167 ORTHO05D006312 3.4e-34 150.6 139 57.6
MBI17_g35871_MAGBIO Magnolia biondii HOM05D005167 ORTHO05D006312 7.6e-34 149.4 106 67.9
AUR62032503 Chenopodium quinoa HOM05D005167 ORTHO05D000001 6.5e-33 146.4 346 32.1
Eucgr.B01586 Eucalyptus grandis HOM05D005167 ORTHO05D006312 8.5e-33 146.0 389 32.1
Nitab4.5_0001246g0010 Nicotiana tabacum HOM05D005167 ORTHO05D006312 1.9e-32 144.8 363 30.0
Nitab4.5_0007926g0020 Nicotiana tabacum HOM05D005167 ORTHO05D006312 9.3e-32 142.5 363 29.8
BcaC06g36613 Brassica carinata HOM05D005167 ORTHO05D006312 7.9e-31 139.4 290 32.4
ECA234G3362 Erigeron canadensis HOM05D005167 ORTHO05D006312 6.7e-30 136.3 389 30.1
A07p01000 Brassica napus HOM05D005167 ORTHO05D006312 8.8e-30 136.0 150 48.0
QL01p052835 Quercus lobata HOM05D005167 ORTHO05D006312 2.5e-29 134.4 149 47.7
QL93p1868_0064 Quercus lobata HOM05D005167 ORTHO05D006312 7.4e-29 132.9 149 47.0
Thhalv10028065m.g Eutrema salsugineum HOM05D005167 ORTHO05D006312 9.7e-29 132.5 148 45.9
C06p19120 Brassica napus HOM05D005167 ORTHO05D006312 1.3e-28 132.1 150 47.3
BolC6t37111H Brassica oleracea HOM05D005167 ORTHO05D006312 1.3e-28 132.1 150 47.3
QL01p053234 Quercus lobata HOM05D005167 ORTHO05D006312 4.1e-27 127.1 162 40.7
Gohir.D07G228750 Gossypium hirsutum HOM05D005167 ORTHO05D006312 2.2e-25 121.3 404 26.2
BcaC06g31947 Brassica carinata HOM05D005167 ORTHO05D006312 1.6e-23 115.2 294 27.9
Gorai.001G263800 Gossypium raimondii HOM05D005167 ORTHO05D006312 2.1e-23 114.8 401 27.4
Dinv42629 Davidia involucrata HOM05D005167 ORTHO05D006312 2.6e-21 107.8 70 71.4
HanXRQChr12g0378911 Helianthus annuus HOM05D005167 ORTHO05D006312 8.2e-20 102.8 154 35.7
SpUn0005_0090 Schrenkiella parvula HOM05D005167 ORTHO05D006312 3.4e-18 97.4 112 43.8
Atru.chr9.63 Acer truncatum HOM05D005167 ORTHO05D006312 1.9e-16 91.7 106 43.4
Gohir.A12G103850 Gossypium hirsutum HOM05D005167 ORTHO05D006312 7.2e-16 89.7 117 47.0
PGSC0003DMG400040448 Solanum tuberosum HOM05D005167 ORTHO05D006312 1.6e-15 88.6 120 40.8
Aqoxy4G01501 Aquilegia oxysepala HOM05D005167 ORTHO05D006312 2.7e-15 87.8 161 35.4
Eucgr.B01611 Eucalyptus grandis HOM05D005167 ORTHO05D006312 2.7e-15 87.8 119 43.7
Rhsim04G0168400 Rhododendron simsii HOM05D000018 ORTHO05D008577 2.4e-11 74.7 79 54.4
BcaC06g31946 Brassica carinata HOM05D005167 ORTHO05D006312 7.7e-10 69.7 67 49.3
ECA232G3819 Erigeron canadensis HOM05D007651 ORTHO05D000898 8.5e-09 66.2 65 52.3
Nn2g11162 Nelumbo nucifera HOM05D000080 ORTHO05D000053 3.0e-06 57.8 39 69.2


User provided reference genes

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