Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1377.3 Capsicum annuum HOM05D011975 ORTHO05D001736 4.6e-245 850.9 443 100.0
Nitab4.5_0007460g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 5.6e-118 428.7 391 66.5
Peaxi162Scf00026g00163 Petunia axillaris HOM05D011975 ORTHO05D001736 2.0e-99 367.1 372 60.5
Solyc01g010280.3 Solanum lycopersicum HOM05D011975 ORTHO05D001736 2.3e-95 353.6 339 63.1
Sopen01g005900 Solanum pennellii HOM05D011975 ORTHO05D001736 6.6e-95 352.1 372 60.2
Nitab4.5_0001118g0030 Nicotiana tabacum HOM05D011975 ORTHO05D001736 4.8e-93 345.9 379 58.3
PGSC0003DMG400021892 Solanum tuberosum HOM05D011975 ORTHO05D001736 6.2e-77 292.4 300 60.7
Nitab4.5_0026364g0010 Nicotiana tabacum HOM05D011975 ORTHO05D001736 2.1e-48 197.6 314 47.5
Nitab4.5_0003583g0020 Nicotiana tabacum HOM05D011975 ORTHO05D001736 3.0e-47 193.7 326 46.3
Peaxi162Scf00667g00065 Petunia axillaris HOM05D011975 ORTHO05D001736 3.8e-42 176.8 286 47.2
CAN.G162.1 Capsicum annuum HOM05D000061 ORTHO05D000050 1.3e-37 161.8 77 97.4
CAN.G311.5 Capsicum annuum HOM05D000894 ORTHO05D001833 4.8e-37 159.8 89 85.4
CAN.G352.49 Capsicum annuum HOM05D005518 ORTHO05D001269 8.2e-37 159.1 73 100.0
CAN.G1045.41 Capsicum annuum HOM05D000679 ORTHO05D000137 1.8e-36 157.9 74 98.6
CAN.G981.51 Capsicum annuum HOM05D002871 ORTHO05D003307 3.1e-36 157.1 72 100.0
CAN.G65.146 Capsicum annuum HOM05D002676 ORTHO05D003194 1.6e-35 154.8 72 98.6
CAN.G824.1 Capsicum annuum HOM05D000357 ORTHO05D000242 1.6e-35 154.8 72 98.6
CAN.G1357.22 Capsicum annuum HOM05D004610 ORTHO05D000242 8.8e-31 139.0 66 95.5
CAN.G350.3 Capsicum annuum HOM05D000139 ORTHO05D000103 2.7e-27 127.5 107 62.6
Solyc04g005410.3 Solanum lycopersicum HOM05D001391 ORTHO05D002605 2.9e-26 124.0 295 38.3
PGSC0003DMG400017799 Solanum tuberosum HOM05D011975 ORTHO05D001736 3.3e-25 120.6 275 40.4
CAN.G745.13 Capsicum annuum HOM05D000043 ORTHO05D017775 1.4e-23 115.2 61 90.2
CAN.G1986.5 Capsicum annuum HOM05D004918 ORTHO05D005706 4.0e-23 113.6 53 98.1
Sopen04g001390 Solanum pennellii HOM05D011975 ORTHO05D001736 9.8e-22 109.0 326 35.3
CAN.G1357.20 Capsicum annuum HOM05D000357 ORTHO05D000242 6.3e-21 106.3 53 92.5
CAN.G206.200 Capsicum annuum HOM05D009846 ORTHO05D000368 1.4e-20 105.1 48 100.0
CAN.G1069.26 Capsicum annuum HOM05D000357 ORTHO05D000242 4.1e-20 103.6 52 90.4
CAN.G1556.3 Capsicum annuum HOM05D000357 ORTHO05D000242 4.1e-20 103.6 52 90.4
Rhsim09G0127000 Rhododendron simsii HOM05D003787 ORTHO05D001736 2.3e-18 97.8 270 38.9
MSTRG.755 Avicennia marina HOM05D011975 ORTHO05D001736 2.1e-16 91.3 214 39.3
Dinv34065 Davidia involucrata HOM05D003787 ORTHO05D001736 6.1e-16 89.7 316 31.0
Hma1.2p1_0566F.1_g179820 Hydrangea macrophylla HOM05D003787 ORTHO05D001736 8.0e-16 89.4 306 31.7
Actinidia13966 Actinidia chinensis HOM05D003787 ORTHO05D001736 1.8e-15 88.2 220 35.9
DCAR_024124 Daucus carota HOM05D003787 ORTHO05D001736 1.8e-15 88.2 258 33.3
Oeu004587.1 Olea europaea HOM05D011975 ORTHO05D001736 4.0e-15 87.0 203 37.4
CAN.G1144.20 Capsicum annuum HOM05D000357 ORTHO05D000242 1.5e-14 85.1 40 95.0
PGR119G1736 Punica granatum HOM05D003787 ORTHO05D001736 1.5e-14 85.1 178 40.4
Duzib268G1106 Durio zibethinus HOM05D003787 ORTHO05D001736 3.4e-14 84.0 201 39.3
Dinv16736 Davidia involucrata HOM05D003787 ORTHO05D001736 9.8e-14 82.4 144 41.7
Migut.L01187 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.3e-13 82.0 126 48.4
vmacro10428 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 2.9e-13 80.9 406 29.1
CAN.G641.7 Capsicum annuum HOM05D000092 ORTHO05D000042 6.4e-13 79.7 46 82.6
CAN.G222.97 Capsicum annuum HOM05D000357 ORTHO05D000242 8.3e-13 79.3 48 79.2
CiPaw.05G124800 Carya illinoinensis HOM05D003787 ORTHO05D001736 1.1e-12 79.0 188 37.8
SGA_v2.0_scaffold36G14463 Striga asiatica HOM05D003787 ORTHO05D001736 1.1e-12 79.0 172 42.4
GSVIVG01012223001 Vitis vinifera HOM05D003787 ORTHO05D001736 1.1e-12 79.0 135 44.4
Cfa007670 Carpinus fangiana HOM05D003787 ORTHO05D001736 2.4e-12 77.8 89 55.1
Sabra08G0072600 Salix brachista HOM05D003787 ORTHO05D001736 2.4e-12 77.8 283 29.7
Haze_14428 Corylus avellana HOM05D003787 ORTHO05D001736 3.2e-12 77.4 93 52.7
MD16G1060800 Malus domestica HOM05D003787 ORTHO05D001736 3.2e-12 77.4 178 38.8
CAN.G585.28 Capsicum annuum HOM05D003409 ORTHO05D002360 5.4e-12 76.6 37 91.9
Potri.008G096300 Populus trichocarpa HOM05D003787 ORTHO05D001736 5.4e-12 76.6 165 38.8
TWI79G0236 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 5.4e-12 76.6 154 44.2
Cpa.g.sc1.128 Carica papaya HOM05D003787 ORTHO05D001736 7.0e-12 76.3 217 34.6
MD13G1062500 Malus domestica HOM05D003787 ORTHO05D001736 7.0e-12 76.3 244 35.7
QL03p074082 Quercus lobata HOM05D003787 ORTHO05D001736 1.6e-11 75.1 310 29.7
Ciclev10033684m.g Citrus clementina HOM05D003787 ORTHO05D001736 2.0e-11 74.7 242 32.6
Lju41C3T13 Lonicera japonica HOM05D003787 ORTHO05D001736 2.7e-11 74.3 122 41.8
Potri.010G158000 Populus trichocarpa HOM05D003787 ORTHO05D001736 3.5e-11 73.9 203 36.0
Thecc.02G330000 Theobroma cacao HOM05D003787 ORTHO05D001736 3.5e-11 73.9 200 38.0
CAN.G397.2 Capsicum annuum HOM05D000357 ORTHO05D000242 4.6e-11 73.6 140 37.1
MELO3C012154.2 Cucumis melo HOM05D003787 ORTHO05D001736 4.6e-11 73.6 138 42.8
Sabra10G0120000 Salix brachista HOM05D003787 ORTHO05D001736 4.6e-11 73.6 196 37.2
Lalb_Chr10g0098891 Lupinus albus HOM05D014318 ORTHO05D001736 7.8e-11 72.8 177 37.3
TWI75G0087 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 1.0e-10 72.4 143 44.1
ClCG05G023700 Citrullus lanatus HOM05D003787 ORTHO05D001736 1.3e-10 72.0 117 47.0
Atru.chr11.1622 Acer truncatum HOM05D003787 ORTHO05D001736 1.7e-10 71.6 364 29.7
TWI31G1463 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 3.0e-10 70.9 165 40.6
VMungo0464G0106 Vigna mungo HOM05D003787 ORTHO05D001736 3.0e-10 70.9 131 39.7
CSS0001662 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 6.6e-10 69.7 131 38.2
COL.COLO4_27878 Corchorus olitorius HOM05D003787 ORTHO05D001736 6.6e-10 69.7 159 37.7
Potri.017G094300 Populus trichocarpa HOM05D003787 ORTHO05D001736 6.6e-10 69.7 102 44.1
arahy.Tifrunner.gnm1.ann1.MG99FN Arachis hypogaea HOM05D003787 ORTHO05D001736 1.1e-09 68.9 106 39.6
Haze_11903 Corylus avellana HOM05D003787 ORTHO05D001736 1.5e-09 68.6 84 51.2
CsaV3_5G033340 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.5e-09 68.6 118 44.9
Migut.H00622 Erythranthe guttata HOM05D003787 ORTHO05D001736 1.9e-09 68.2 142 39.4
Lalb_Chr04g0255641 Lupinus albus HOM05D014318 ORTHO05D001736 2.5e-09 67.8 275 32.0
Prupe.1G287500 Prunus persica HOM05D003787 ORTHO05D001736 2.5e-09 67.8 145 41.4
Phvul.003G042100 Phaseolus vulgaris HOM05D014318 ORTHO05D001736 3.3e-09 67.4 231 33.8
Sc11g0002500 Simmondsia chinensis HOM05D003787 ORTHO05D001736 3.3e-09 67.4 111 39.6
Thhalv10005553m.g Eutrema salsugineum HOM05D003787 ORTHO05D001736 7.3e-09 66.2 147 38.8
CAN.G1357.25 Capsicum annuum HOM05D000357 ORTHO05D000242 9.5e-09 65.9 35 82.9
Carub.0005s0277 Capsella rubella HOM05D003787 ORTHO05D001736 1.2e-08 65.5 88 48.9
Ca_04304_v3 Cicer arietinum L. HOM05D003787 ORTHO05D001736 1.2e-08 65.5 113 40.7
arahy.Tifrunner.gnm1.ann1.NP9FW8 Arachis hypogaea HOM05D003787 ORTHO05D001736 1.6e-08 65.1 116 37.9
SHI15724 Sapria himalayana HOM05D003787 ORTHO05D001736 1.6e-08 65.1 371 29.1
Psat2g130920 Pisum sativum HOM05D014318 ORTHO05D001736 2.1e-08 64.7 159 34.0
TAR374G1256 Trochodendron aralioides HOM05D003787 ORTHO05D001736 2.1e-08 64.7 197 35.0
CAN.G1357.21 Capsicum annuum HOM05D000357 ORTHO05D000242 2.8e-08 64.3 31 93.5
MD17G1059900 Malus domestica HOM05D003787 ORTHO05D001736 2.8e-08 64.3 81 46.9
TAR371G0370 Trochodendron aralioides HOM05D006637 ORTHO05D001736 2.8e-08 64.3 223 32.7
Lalb_Chr17g0341211 Lupinus albus HOM05D014318 ORTHO05D001736 3.6e-08 63.9 311 30.5
Sp2g14470 Schrenkiella parvula HOM05D003787 ORTHO05D001736 3.6e-08 63.9 95 45.3
Sc10g0009690 Simmondsia chinensis HOM05D006637 ORTHO05D001736 3.6e-08 63.9 102 48.0
Duzib251G0768 Durio zibethinus HOM05D003787 ORTHO05D001736 4.7e-08 63.5 193 35.2
Glyma.19G030300 Glycine max HOM05D003787 ORTHO05D001736 8.0e-08 62.8 143 36.4
THA.LOC104800368 Tarenaya hassleriana HOM05D011628 ORTHO05D014769 8.0e-08 62.8 156 34.0
TAR629G2847 Trochodendron aralioides HOM05D003787 ORTHO05D001736 1.4e-07 62.0 147 36.1
Ciclev10012704m.g Citrus clementina HOM05D003787 ORTHO05D001736 1.8e-07 61.6 79 46.8
Oeu044877.1 Olea europaea HOM05D006637 ORTHO05D001736 2.3e-07 61.2 94 47.9
Phvul.004G037400 Phaseolus vulgaris HOM05D003787 ORTHO05D001736 2.3e-07 61.2 120 41.7
TWI60G0888 Tripterygium wilfordii HOM05D003787 ORTHO05D001736 2.3e-07 61.2 178 33.1
Glyma.01G060001 Glycine max HOM05D014318 ORTHO05D001736 3.1e-07 60.8 148 37.8
Lsat_1_v5_gn_2_90140 Lactuca sativa HOM05D003787 ORTHO05D001736 3.1e-07 60.8 141 36.9
Peaxi162Scf00166g00047 Petunia axillaris HOM05D003787 ORTHO05D001736 3.1e-07 60.8 71 50.7
Rhsim10G0049700 Rhododendron simsii HOM05D003787 ORTHO05D001736 3.1e-07 60.8 175 32.0
Sc04g0007550 Simmondsia chinensis HOM05D003787 ORTHO05D001736 3.1e-07 60.8 271 30.6
vmacro18147 Vaccinium macrocarpon HOM05D003787 ORTHO05D001736 3.1e-07 60.8 161 36.6
CANSAT64G2286 Cannabis sativa HOM05D003787 ORTHO05D001736 4.0e-07 60.5 95 48.4
CAN.G397.1 Capsicum annuum HOM05D000357 ORTHO05D000242 4.0e-07 60.5 31 90.3
DCAR_030042 Daucus carota HOM05D003787 ORTHO05D001736 4.0e-07 60.5 117 35.9
Medtr5g045480 Medicago truncatula HOM05D003787 ORTHO05D001736 4.0e-07 60.5 250 30.0
unitig_8.g3183 Utricularia gibba HOM05D003787 ORTHO05D001736 4.0e-07 60.5 108 45.4
Sabra17G0083100 Salix brachista HOM05D003787 ORTHO05D001736 5.2e-07 60.1 125 39.2
CSS0023913 Camellia sinensis var. sinensis HOM05D003787 ORTHO05D001736 6.8e-07 59.7 308 30.5
Oeu007068.1 Olea europaea HOM05D003787 ORTHO05D001736 6.8e-07 59.7 170 35.9
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 8.9e-07 59.3 75 48.0
A09p24510 Brassica napus HOM05D003787 ORTHO05D001736 8.9e-07 59.3 75 48.0
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 8.9e-07 59.3 75 48.0
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 8.9e-07 59.3 75 48.0
Cc07_g04250 Coffea canephora HOM05D003787 ORTHO05D001736 8.9e-07 59.3 80 45.0
Duzib264G1237 Durio zibethinus HOM05D003787 ORTHO05D001736 8.9e-07 59.3 146 39.7
SalBow1G2532 Salvia bowleyana HOM05D003787 ORTHO05D001736 8.9e-07 59.3 131 39.7
GSVIVG01007850001 Vitis vinifera HOM05D006637 ORTHO05D001736 8.9e-07 59.3 266 32.0
BraA09t38045Z Brassica rapa HOM05D003787 ORTHO05D001736 1.2e-06 58.9 75 48.0
Prupe.3G254700 Prunus persica HOM05D003787 ORTHO05D001736 1.2e-06 58.9 72 50.0
THA.LOC104803131 Tarenaya hassleriana HOM05D012214 ORTHO05D001736 1.2e-06 58.9 105 41.9
CsaV3_5G038510 Cucumis sativus L. HOM05D003787 ORTHO05D001736 1.5e-06 58.5 76 47.4
Sed0025283 Sechium edule HOM05D003787 ORTHO05D001736 1.5e-06 58.5 137 38.0
CANSAT64G1049 Cannabis sativa HOM05D003787 ORTHO05D001736 2.0e-06 58.2 73 47.9
Sed0011679 Sechium edule HOM05D003787 ORTHO05D001736 2.0e-06 58.2 82 47.6
MSTRG.23883 Avicennia marina HOM05D003787 ORTHO05D001736 2.6e-06 57.8 43 60.5
Lj2g0027532 Lotus japonicus HOM05D014318 ORTHO05D001736 2.6e-06 57.8 382 25.7
Lalb_Chr06g0174951 Lupinus albus HOM05D003787 ORTHO05D001736 2.6e-06 57.8 70 54.3
Psat1g068800 Pisum sativum HOM05D003787 ORTHO05D001736 2.6e-06 57.8 79 48.1
THA.LOC104805198 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 2.6e-06 57.8 93 45.2
TPR.G10000 Trifolium pratense HOM05D003787 ORTHO05D001736 2.6e-06 57.8 196 30.1
BcaB07g30663 Brassica carinata HOM05D003787 ORTHO05D001736 3.4e-06 57.4 110 34.5
Glyma.13G056300 Glycine max HOM05D003787 ORTHO05D001736 3.4e-06 57.4 157 35.7
SGA_v2.0_scaffold148G36413 Striga asiatica HOM05D003787 ORTHO05D001736 3.4e-06 57.4 96 43.8
Atru.chr8.428 Acer truncatum HOM05D003787 ORTHO05D001736 4.4e-06 57.0 138 34.8
CAN.G1298.43 Capsicum annuum HOM05D000001 ORTHO05D004533 4.4e-06 57.0 30 86.7
Dinv33830 Davidia involucrata HOM05D003787 ORTHO05D001736 4.4e-06 57.0 169 35.5
Actinidia17586 Actinidia chinensis HOM05D003787 ORTHO05D001736 5.8e-06 56.6 174 35.6
Sc04g0004350 Simmondsia chinensis HOM05D006637 ORTHO05D001736 5.8e-06 56.6 106 44.3
SGA_v2.0_scaffold154G37113 Striga asiatica HOM05D003787 ORTHO05D001736 5.8e-06 56.6 92 44.6
THA.LOC104801821 Tarenaya hassleriana HOM05D003787 ORTHO05D001736 5.8e-06 56.6 89 43.8
Lalb_Chr02g0158901 Lupinus albus HOM05D003787 ORTHO05D001736 7.5e-06 56.2 162 32.7
Sp3g01190 Schrenkiella parvula HOM05D012214 ORTHO05D001736 7.5e-06 56.2 95 41.1
AT2G03630 Arabidopsis thaliana HOM05D003787 ORTHO05D001736 9.8e-06 55.8 122 39.3
CAN.G22.45 Capsicum annuum HOM05D000032 ORTHO05D026337 9.8e-06 55.8 25 92.0
Migut.K01274 Erythranthe guttata HOM05D003787 ORTHO05D001736 9.8e-06 55.8 108 40.7
Nn4g23435 Nelumbo nucifera HOM05D006637 ORTHO05D001736 9.8e-06 55.8 166 34.3
PGSC0003DMG400001359 Solanum tuberosum HOM05D003787 ORTHO05D001736 9.8e-06 55.8 144 35.4
SGA_v2.0_scaffold52G19142 Striga asiatica HOM05D003787 ORTHO05D001736 9.8e-06 55.8 56 55.4


User provided reference genes

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