Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G13730.1 Capsicum annuum HOM05D000011 ORTHO05D005888 8.6e-119 430.3 206 100.0
CAN.G86.38 Capsicum annuum HOM05D000011 ORTHO05D005888 3.2e-105 385.2 188 97.3
CAN.G86.40 Capsicum annuum HOM05D000011 ORTHO05D005888 3.2e-105 385.2 188 97.3
Solyc07g053010.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 1.1e-89 333.6 189 82.0
Sopen07g026560 Solanum pennellii HOM05D000011 ORTHO05D005888 4.2e-89 331.6 189 81.0
PGSC0003DMG400026161 Solanum tuberosum HOM05D000011 ORTHO05D005888 1.8e-87 326.2 189 80.4
Peaxi162Scf00007g01510 Petunia axillaris HOM05D000011 ORTHO05D005888 9.3e-81 303.9 187 77.0
Cc05_g05540 Coffea canephora HOM05D000011 ORTHO05D005888 2.2e-53 213.0 163 56.4
Cc05_g05550 Coffea canephora HOM05D000011 ORTHO05D005888 9.1e-52 207.6 163 55.8
Cc05_g05530 Coffea canephora HOM05D000011 ORTHO05D005888 1.0e-50 204.1 176 53.4
CAN.G1467.4 Capsicum annuum HOM05D000011 ORTHO05D005888 1.1e-49 200.7 174 51.1
PGSC0003DMG400026187 Solanum tuberosum HOM05D000011 ORTHO05D005888 1.9e-49 199.9 167 52.7
Sopen07g026570 Solanum pennellii HOM05D000011 ORTHO05D005888 2.7e-48 196.1 164 53.0
Solyc07g053020.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 1.8e-47 193.4 164 53.0
Duzib213G0151 Durio zibethinus HOM05D000011 ORTHO05D005888 2.6e-46 189.5 162 55.6
TAR271G0001 Trochodendron aralioides HOM05D000011 ORTHO05D005888 3.3e-46 189.1 173 48.0
Thecc.07G058900 Theobroma cacao HOM05D000011 ORTHO05D005888 1.7e-45 186.8 159 54.1
CSS0025623 Camellia sinensis var. sinensis HOM05D000011 ORTHO05D005888 1.1e-44 184.1 170 51.8
TAR375G0870 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.4e-44 183.7 162 52.5
Dinv18562 Davidia involucrata HOM05D000011 ORTHO05D005888 3.1e-44 182.6 167 52.1
Gorai.002G079700 Gossypium raimondii HOM05D000011 ORTHO05D005888 1.2e-43 180.6 159 52.8
Gohir.A01G072000 Gossypium hirsutum HOM05D000011 ORTHO05D005888 3.5e-43 179.1 159 52.2
Gohir.D01G058800 Gossypium hirsutum HOM05D000011 ORTHO05D005888 4.5e-43 178.7 159 52.2
Potri.011G129800 Populus trichocarpa HOM05D000011 ORTHO05D005888 4.5e-43 178.7 162 50.6
TAR626G1165 Trochodendron aralioides HOM05D000011 ORTHO05D005888 8.0e-40 167.9 137 54.7
Atru.chr1.2395 Acer truncatum HOM05D000011 ORTHO05D005888 3.1e-36 156.0 163 44.2
Atru.chr1.2405 Acer truncatum HOM05D000011 ORTHO05D005888 9.1e-36 154.5 163 44.2
Atru.chr1.2411 Acer truncatum HOM05D000011 ORTHO05D005888 9.1e-36 154.5 163 44.2
RcHm_v2.0_Chr4g0391451 Rosa chinensis HOM05D000011 ORTHO05D005888 1.6e-35 153.7 162 41.4
RcHm_v2.0_Chr4g0391681 Rosa chinensis HOM05D000011 ORTHO05D005888 1.6e-35 153.7 162 42.0
TAR629G3423 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.6e-35 153.7 138 52.2
RcHm_v2.0_Chr5g0001221 Rosa chinensis HOM05D000011 ORTHO05D005888 7.7e-35 151.4 162 41.4
Prupe.4G009300 Prunus persica HOM05D000011 ORTHO05D005888 1.3e-34 150.6 180 40.0
RcHm_v2.0_Chr4g0391601 Rosa chinensis HOM05D001899 ORTHO05D005888 6.5e-34 148.3 162 38.9
COL.COLO4_09533 Corchorus olitorius HOM05D000011 ORTHO05D005888 3.3e-33 146.0 134 53.0
Manes.05G097902 Manihot esculenta HOM05D000011 ORTHO05D005888 5.5e-33 145.2 174 40.2
Potri.016G092600 Populus trichocarpa HOM05D000009 ORTHO05D005888 1.6e-32 143.7 178 40.4
Aqoxy1G03782 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 3.6e-32 142.5 156 39.7
Potri.006G014400 Populus trichocarpa HOM05D000011 ORTHO05D005888 8.9e-31 137.9 163 41.7
Ciclev10023333m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.3e-29 134.0 164 39.6
TAR628G1202 Trochodendron aralioides HOM05D000011 ORTHO05D005888 3.7e-29 132.5 163 39.9
MBI05_g29539_MAGBIO Magnolia biondii HOM05D000181 ORTHO05D002783 8.3e-29 131.3 154 43.5
Ciclev10023392m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.4e-28 130.6 164 39.0
Peaxi162Scf00418g00738 Petunia axillaris HOM05D000011 ORTHO05D005888 2.4e-28 129.8 155 43.2
PGR119G1269 Punica granatum HOM05D000011 ORTHO05D005888 2.4e-28 129.8 158 41.8
Ciclev10024145m.g Citrus clementina HOM05D000011 ORTHO05D005888 4.1e-28 129.0 161 40.4
Nitab4.5_0009996g0010 Nicotiana tabacum HOM05D000011 ORTHO05D005888 4.1e-28 129.0 87 73.6
FAN26G0664 Fragaria x ananassa HOM05D000011 ORTHO05D005888 9.2e-28 127.9 153 41.8
Dinv05624 Davidia involucrata HOM05D000011 ORTHO05D005888 1.2e-27 127.5 150 42.7
Hma1.2p1_1297F.1_g274020 Hydrangea macrophylla HOM05D000011 ORTHO05D005888 1.6e-27 127.1 159 40.9
Sabra05G0098600 Salix brachista HOM05D000011 ORTHO05D005888 1.6e-27 127.1 158 40.5
Manes.02G097400 Manihot esculenta HOM05D000011 ORTHO05D005888 2.0e-27 126.7 163 38.7
Nitab4.5_0000723g0210 Nicotiana tabacum HOM05D000011 ORTHO05D005888 2.7e-27 126.3 157 41.4
RcHm_v2.0_Chr2g0100711 Rosa chinensis HOM05D000011 ORTHO05D005888 1.3e-26 124.0 150 41.3
Atru.chr3.660 Acer truncatum HOM05D000011 ORTHO05D005888 1.7e-26 123.6 151 40.4
Atru.chr3.705 Acer truncatum HOM05D000126 ORTHO05D005888 1.7e-26 123.6 151 40.4
Haze_03939 Corylus avellana HOM05D000011 ORTHO05D005888 2.3e-26 123.2 165 40.0
Prupe.7G160100 Prunus persica HOM05D000011 ORTHO05D005888 2.3e-26 123.2 145 43.4
CAN.G358.39 Capsicum annuum HOM05D000011 ORTHO05D005888 2.9e-26 122.9 157 39.5
Nitab4.5_0003313g0020 Nicotiana tabacum HOM05D000011 ORTHO05D005888 3.8e-26 122.5 157 40.1
Oeu023324.1 Olea europaea HOM05D000011 ORTHO05D005888 3.8e-26 122.5 162 38.3
FvH4_1g12710 Fragaria vesca HOM05D000011 ORTHO05D005888 5.0e-26 122.1 153 39.9
FAN19G2517 Fragaria x ananassa HOM05D000011 ORTHO05D005888 5.0e-26 122.1 153 40.5
Aqoxy7G03297 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 8.6e-26 121.3 158 37.3
Sabra06G0010200 Salix brachista HOM05D000011 ORTHO05D005888 8.6e-26 121.3 147 40.8
Cc07_g09980 Coffea canephora HOM05D000011 ORTHO05D005888 1.5e-25 120.6 158 38.6
Thhalv10010117m.g Eutrema salsugineum HOM05D000011 ORTHO05D005888 1.9e-25 120.2 156 41.0
TAR376G0168 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.9e-25 120.2 161 37.3
Gohir.D12G062550 Gossypium hirsutum HOM05D002044 ORTHO05D005888 2.5e-25 119.8 153 39.2
PSO339G0683 Papaver somniferum HOM05D000011 ORTHO05D005888 2.5e-25 119.8 161 39.8
TWI38G1574 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 2.5e-25 119.8 138 42.0
Gorai.008G065600 Gossypium raimondii HOM05D002044 ORTHO05D005888 4.3e-25 119.0 153 38.6
Potri.005G119800 Populus trichocarpa HOM05D000011 ORTHO05D005888 4.3e-25 119.0 151 40.4
Gohir.A12G062700 Gossypium hirsutum HOM05D002044 ORTHO05D005888 5.6e-25 118.6 153 38.6
Sc10g0006840 Simmondsia chinensis HOM05D000011 ORTHO05D005888 5.6e-25 118.6 163 36.2
QL06p035302 Quercus lobata HOM05D000011 ORTHO05D005888 7.3e-25 118.2 157 40.1
Solyc02g084890.3 Solanum lycopersicum HOM05D000011 ORTHO05D005888 7.3e-25 118.2 157 38.2
PGSC0003DMG400003527 Solanum tuberosum HOM05D000011 ORTHO05D005888 9.5e-25 117.9 157 39.5
GSVIVG01018889001 Vitis vinifera HOM05D002044 ORTHO05D005000 1.2e-24 117.5 150 38.7
Sopen02g029560 Solanum pennellii HOM05D000011 ORTHO05D005888 1.6e-24 117.1 157 38.2
TWI09G1527 Tripterygium wilfordii HOM05D000011 ORTHO05D005888 2.1e-24 116.7 156 35.9
Aa31LG4G19080 Aethionema arabicum HOM05D000011 ORTHO05D005888 2.8e-24 116.3 156 39.7
Sp5g11250 Schrenkiella parvula HOM05D000011 ORTHO05D005888 2.8e-24 116.3 150 40.7
Ciclev10024885m.g Citrus clementina HOM05D000011 ORTHO05D005888 3.6e-24 115.9 151 40.4
Carub.0005s1735 Capsella rubella HOM05D000011 ORTHO05D005888 4.7e-24 115.5 155 37.4
AT3G50950 Arabidopsis thaliana HOM05D000011 ORTHO05D005888 8.0e-24 114.8 155 38.1
Cfa006904 Carpinus fangiana HOM05D000126 ORTHO05D005888 1.0e-23 114.4 163 37.4
AL5G31350 Arabidopsis lyrata HOM05D000011 ORTHO05D005888 1.4e-23 114.0 155 38.1
CANSAT01G1164 Cannabis sativa HOM05D000011 ORTHO05D005888 1.8e-23 113.6 160 39.4
MBI02_g32904_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 1.8e-23 113.6 158 39.2
Duzib147G0382 Durio zibethinus HOM05D000011 ORTHO05D005888 2.3e-23 113.2 166 36.7
Manes.15G108800 Manihot esculenta HOM05D000011 ORTHO05D005888 2.3e-23 113.2 151 39.7
CiPaw.08G139300 Carya illinoinensis HOM05D000011 ORTHO05D005888 3.0e-23 112.8 156 39.7
Nitab4.5_0001134g0040 Nicotiana tabacum HOM05D000011 ORTHO05D005888 4.0e-23 112.5 156 45.5
MBI02_g29411_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 5.2e-23 112.1 178 39.9
CARHR160530 Cardamine hirsuta HOM05D000011 ORTHO05D005888 6.8e-23 111.7 157 38.9
Ciclev10023688m.g Citrus clementina HOM05D000011 ORTHO05D005888 6.8e-23 111.7 136 41.2
THA.LOC104819196 Tarenaya hassleriana HOM05D000011 ORTHO05D005888 8.9e-23 111.3 161 39.1
PSO384G5066 Papaver somniferum HOM05D000011 ORTHO05D005888 1.5e-22 110.5 151 37.1
Hund08515 Selenicereus undatus HOM05D000011 ORTHO05D005888 1.5e-22 110.5 168 35.1
EL10Ac9g22899 Beta vulgaris HOM05D000011 ORTHO05D005888 2.6e-22 109.8 166 34.3
CDE05G1989 Ceratophyllum demersum HOM05D000009 ORTHO05D005888 2.6e-22 109.8 164 37.8
MD02G1141100 Malus domestica HOM05D000011 ORTHO05D005888 2.6e-22 109.8 152 40.1
BcaC07g39568 Brassica carinata HOM05D001899 ORTHO05D005888 3.4e-22 109.4 156 37.8
MBI02_g15402_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 3.4e-22 109.4 161 39.1
A09p44070 Brassica napus HOM05D000126 ORTHO05D005888 1.3e-21 107.5 156 37.8
BraA09t39865Z Brassica rapa HOM05D000126 ORTHO05D005888 1.3e-21 107.5 156 37.8
RcHm_v2.0_Chr3g0485861 Rosa chinensis HOM05D000011 ORTHO05D005888 1.7e-21 107.1 124 41.1
C08p26210 Brassica napus HOM05D000126 ORTHO05D005888 2.2e-21 106.7 156 37.8
BolC8t50239H Brassica oleracea HOM05D000126 ORTHO05D005888 2.2e-21 106.7 156 37.8
CANSAT56G3289 Cannabis sativa HOM05D000009 ORTHO05D005888 3.7e-21 105.9 135 42.2
Sabra17G0115400 Salix brachista HOM05D000011 ORTHO05D005888 4.9e-21 105.5 128 41.4
RcHm_v2.0_Chr5g0001141 Rosa chinensis HOM05D000011 ORTHO05D005888 1.1e-20 104.4 124 40.3
AUR62017643 Chenopodium quinoa HOM05D000011 ORTHO05D005888 2.4e-20 103.2 157 33.1
CDE05G1250 Ceratophyllum demersum HOM05D000011 ORTHO05D005888 3.2e-20 102.8 146 35.6
A09p50590 Brassica napus HOM05D000011 ORTHO05D005888 1.2e-19 100.9 150 36.7
Ah.01g001710 Amaranthus hybridus HOM05D000011 ORTHO05D005888 1.6e-19 100.5 157 32.5
AUR62012869 Chenopodium quinoa HOM05D000011 ORTHO05D005888 2.7e-19 99.8 167 32.3
Aqoxy1G03985 Aquilegia oxysepala HOM05D000011 ORTHO05D005888 1.0e-18 97.8 123 37.4
MBI02_g22866_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 1.3e-18 97.4 176 36.4
MBI02_g29409_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 1.3e-18 97.4 144 37.5
MBI02_g27000_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 5.0e-18 95.5 142 38.7
TAR624G0844 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.1e-17 94.4 87 48.3
FvH4_3g00820 Fragaria vesca HOM05D000011 ORTHO05D005888 1.5e-17 94.0 115 41.7
TAR471G0001 Trochodendron aralioides HOM05D000011 ORTHO05D005888 1.1e-15 87.8 97 47.4
BcaB01g00559 Brassica carinata HOM05D000011 ORTHO05D005888 2.3e-15 86.7 156 34.0
BcaC07g39565 Brassica carinata HOM05D000126 ORTHO05D005888 3.1e-15 86.3 156 35.3
Cpa.g.sc75.105 Carica papaya HOM05D000011 ORTHO05D005888 3.4e-14 82.8 142 33.1
Nn1g03842 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.2e-13 80.1 159 31.4
Os01g0799000 Oryza sativa ssp. japonica HOM05D001899 ORTHO05D001858 3.7e-13 79.3 162 32.7
Actinidia25743 Actinidia chinensis HOM05D001899 ORTHO05D001858 8.3e-13 78.2 163 33.7
Actinidia27155 Actinidia chinensis HOM05D001899 ORTHO05D001858 7.0e-12 75.1 170 30.0
TWI60G1023 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 3.5e-11 72.8 156 29.5
SGA_v2.0_scaffold7G03908 Striga asiatica HOM05D001899 ORTHO05D001858 6.0e-11 72.0 171 32.2
CANSAT21G1287 Cannabis sativa HOM05D001899 ORTHO05D001858 1.3e-10 70.9 112 35.7
Ciclev10024080m.g Citrus clementina HOM05D000011 ORTHO05D005888 1.3e-10 70.9 88 36.4
Haze_06610 Corylus avellana HOM05D001899 ORTHO05D001858 1.3e-10 70.9 127 34.6
Eucgr.L03043 Eucalyptus grandis HOM05D001899 ORTHO05D001858 6.6e-10 68.6 145 31.0
TWI32G1137 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 6.6e-10 68.6 111 35.1
QL03p005412 Quercus lobata HOM05D001899 ORTHO05D001858 8.6e-10 68.2 119 36.1
QL03p006371 Quercus lobata HOM05D001899 ORTHO05D001858 8.6e-10 68.2 167 30.5
TWI38G0922 Tripterygium wilfordii HOM05D001899 ORTHO05D001858 1.1e-09 67.8 103 35.0
Haze_06602 Corylus avellana HOM05D000432 ORTHO05D000320 1.9e-09 67.0 118 31.4
Lsat_1_v5_gn_1_124180 Lactuca sativa HOM05D001899 ORTHO05D001858 1.9e-09 67.0 114 36.0
Ciclev10024458m.g Citrus clementina HOM05D000011 ORTHO05D005888 5.6e-09 65.5 73 41.1
COL.COLO4_16910 Corchorus olitorius HOM05D001899 ORTHO05D001858 7.3e-09 65.1 152 27.0
RcHm_v2.0_Chr3g0479511 Rosa chinensis HOM05D001899 ORTHO05D001858 1.6e-08 63.9 108 35.2
Cfa000329 Carpinus fangiana HOM05D001899 ORTHO05D001858 2.8e-08 63.2 108 32.4
CARHR176530 Cardamine hirsuta HOM05D001899 ORTHO05D001858 3.6e-08 62.8 112 33.9
Thhalv10000788m.g Eutrema salsugineum HOM05D001899 ORTHO05D001858 8.1e-08 61.6 110 34.5
Atru.chr2.1036 Acer truncatum HOM05D001899 ORTHO05D001858 1.1e-07 61.2 100 36.0
Carub.0008s0252 Capsella rubella HOM05D001899 ORTHO05D001858 1.1e-07 61.2 121 31.4
Atru.chr2.1017 Acer truncatum HOM05D001899 ORTHO05D001858 4.0e-07 59.3 103 34.0
Lju124C32T3 Lonicera japonica HOM05D001899 ORTHO05D001858 4.0e-07 59.3 115 32.2
TAR617G0002 Trochodendron aralioides HOM05D000011 ORTHO05D005888 4.0e-07 59.3 64 46.9
CSS0020860 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 5.2e-07 58.9 120 30.8
Prupe.3G175500 Prunus persica HOM05D000011 ORTHO05D005888 5.2e-07 58.9 115 33.9
Sc02g0005860 Simmondsia chinensis HOM05D000009 ORTHO05D010531 6.8e-07 58.5 196 25.5
Glyma.18G109500 Glycine max HOM05D001899 ORTHO05D001858 8.9e-07 58.2 147 29.3
BcaC06g34430 Brassica carinata HOM05D001899 ORTHO05D001858 2.0e-06 57.0 108 31.5
C07p28570 Brassica napus HOM05D001899 ORTHO05D001858 2.0e-06 57.0 108 31.5
BolC7t43395H Brassica oleracea HOM05D001899 ORTHO05D001858 2.0e-06 57.0 108 31.5
Nn7g37685 Nelumbo nucifera HOM05D001899 ORTHO05D001858 2.0e-06 57.0 156 28.2
CSS0033864 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 2.6e-06 56.6 114 32.5
CSS0026346 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 3.4e-06 56.2 89 34.8
Hma1.2p1_0565F.1_g179700 Hydrangea macrophylla HOM05D001899 ORTHO05D001858 3.4e-06 56.2 167 29.3
CSS0019781 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.4e-06 55.8 120 29.2
CSS0043072 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 4.4e-06 55.8 120 29.2
MBI07_g21352_MAGBIO Magnolia biondii HOM05D000011 ORTHO05D005888 5.8e-06 55.5 58 39.7
BraA06t27532Z Brassica rapa HOM05D001899 ORTHO05D001858 7.5e-06 55.1 135 27.4
CSS0044759 Camellia sinensis var. sinensis HOM05D001899 ORTHO05D001858 7.5e-06 55.1 103 32.0


User provided reference genes

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