Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1362.7 Capsicum annuum HOM05D005138 ORTHO05D006318 2.8e-70 268.5 134 100.0
Solyc01g022750.3 Solanum lycopersicum HOM05D005138 ORTHO05D006318 2.0e-60 235.7 130 87.7
Sopen01g016660 Solanum pennellii HOM05D005138 ORTHO05D006318 3.5e-60 235.0 130 87.7
Nitab4.5_0010402g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 6.3e-54 214.2 134 80.6
PGSC0003DMG400004276 Solanum tuberosum HOM05D005138 ORTHO05D006318 5.4e-53 211.1 132 78.8
Cc07_g21240 Coffea canephora HOM05D005138 ORTHO05D006318 7.2e-50 200.7 134 73.9
Nitab4.5_0004389g0010 Nicotiana tabacum HOM05D005138 ORTHO05D006318 7.2e-50 200.7 157 66.9
Dinv44706 Davidia involucrata HOM05D005138 ORTHO05D006318 6.1e-49 197.6 129 73.6
HanXRQChr11g0341771 Helianthus annuus HOM05D005138 ORTHO05D006318 2.3e-48 195.7 125 72.8
ATR1096G082 Amborella trichopoda HOM05D005138 ORTHO05D006318 1.5e-47 193.0 129 72.1
CiPaw.14G008900 Carya illinoinensis HOM05D005138 ORTHO05D006318 5.7e-47 191.0 127 73.2
Duzib114G0920 Durio zibethinus HOM05D005138 ORTHO05D006318 9.8e-47 190.3 127 72.4
Actinidia34769 Actinidia chinensis HOM05D005138 ORTHO05D006318 1.3e-46 189.9 127 70.9
CDE04G1620 Ceratophyllum demersum HOM05D005138 ORTHO05D006318 1.7e-46 189.5 127 71.7
Lsat_1_v5_gn_1_116501 Lactuca sativa HOM05D005138 ORTHO05D006318 1.7e-46 189.5 125 70.4
Manes.11G007200 Manihot esculenta HOM05D005138 ORTHO05D006318 1.7e-46 189.5 127 72.4
Nitab4.5_0000254g0180 Nicotiana tabacum HOM05D005138 ORTHO05D006318 1.7e-46 189.5 134 73.9
PSO384G1335 Papaver somniferum HOM05D005138 ORTHO05D006318 1.7e-46 189.5 127 68.5
Thecc.10G149000 Theobroma cacao HOM05D005138 ORTHO05D006318 1.7e-46 189.5 127 73.2
CSS0020361 Camellia sinensis var. sinensis HOM05D005138 ORTHO05D006318 2.2e-46 189.1 124 72.6
Psat4g099920 Pisum sativum HOM05D005138 ORTHO05D006318 2.2e-46 189.1 130 71.5
Haze_03004 Corylus avellana HOM05D005138 ORTHO05D006318 2.8e-46 188.7 127 70.9
Gorai.011G218700 Gossypium raimondii HOM05D005138 ORTHO05D006318 2.8e-46 188.7 127 71.7
PSO135G0826 Papaver somniferum HOM05D005138 ORTHO05D006318 2.8e-46 188.7 127 68.5
Duzib128G1035 Durio zibethinus HOM05D005138 ORTHO05D006318 3.7e-46 188.3 127 72.4
Manes.04G157100 Manihot esculenta HOM05D005138 ORTHO05D006318 4.9e-46 188.0 127 72.4
Gohir.D10G195900 Gossypium hirsutum HOM05D005138 ORTHO05D006318 6.3e-46 187.6 127 71.7
Ciclev10002826m.g Citrus clementina HOM05D005138 ORTHO05D006318 8.3e-46 187.2 127 71.7
Medtr8g040150 Medicago truncatula HOM05D005138 ORTHO05D006318 8.3e-46 187.2 130 70.8
TWI74G0500 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 1.1e-45 186.8 127 70.1
Gohir.A10G188000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.4e-45 186.4 127 70.1
Eucgr.G03216 Eucalyptus grandis HOM05D005138 ORTHO05D006318 1.8e-45 186.0 127 71.7
THA.LOC104826756 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 1.8e-45 186.0 131 67.9
Cfa010943 Carpinus fangiana HOM05D005138 ORTHO05D006318 2.4e-45 185.7 127 70.1
CiPaw.13G015300 Carya illinoinensis HOM05D005138 ORTHO05D006318 2.4e-45 185.7 129 69.8
TAR362G0697 Trochodendron aralioides HOM05D005138 ORTHO05D006318 3.1e-45 185.3 127 69.3
Hma1.2p1_0837F.1_g226140 Hydrangea macrophylla HOM05D005138 ORTHO05D006318 5.4e-45 184.5 127 70.9
Prupe.2G041500 Prunus persica HOM05D005138 ORTHO05D006318 5.4e-45 184.5 126 72.2
Ca_23972_v3 Cicer arietinum L. HOM05D005138 ORTHO05D006318 7.0e-45 184.1 135 67.4
Peaxi162Scf00062g02216 Petunia axillaris HOM05D005138 ORTHO05D006318 7.0e-45 184.1 132 72.0
Hund13385 Selenicereus undatus HOM05D005138 ORTHO05D006318 7.0e-45 184.1 123 72.4
vmacro10390 Vaccinium macrocarpon HOM05D005138 ORTHO05D006318 7.0e-45 184.1 127 68.5
THA.LOC104799320 Tarenaya hassleriana HOM05D005138 ORTHO05D006318 9.1e-45 183.7 131 68.7
MD02G1279300 Malus domestica HOM05D005138 ORTHO05D006318 1.6e-44 183.0 126 70.6
MD07G1047200 Malus domestica HOM05D005138 ORTHO05D006318 1.6e-44 183.0 126 70.6
PGR044G2178 Punica granatum HOM05D005138 ORTHO05D006318 1.6e-44 183.0 127 69.3
Cpa.g.sc169.49 Carica papaya HOM05D005138 ORTHO05D006318 2.0e-44 182.6 127 71.7
CsaV3_5G036890 Cucumis sativus L. HOM05D005138 ORTHO05D006318 2.0e-44 182.6 123 72.4
DCAR_029715 Daucus carota HOM05D005138 ORTHO05D006318 2.0e-44 182.6 127 68.5
Os07g0640100 Oryza sativa ssp. japonica HOM05D005138 ORTHO05D006318 2.0e-44 182.6 129 70.5
TPR.G8538 Trifolium pratense HOM05D005138 ORTHO05D006318 2.0e-44 182.6 130 67.7
Atru.chr12.1279 Acer truncatum HOM05D005138 ORTHO05D006318 2.7e-44 182.2 127 69.3
Sed0002262 Sechium edule HOM05D005138 ORTHO05D006318 2.7e-44 182.2 127 68.5
Zm00001eb001400 Zea mays HOM05D005138 ORTHO05D006318 2.7e-44 182.2 127 67.7
TWI38G0338 Tripterygium wilfordii HOM05D005138 ORTHO05D006318 3.5e-44 181.8 132 63.6
SGA_v2.0_scaffold43G16284 Striga asiatica HOM05D005138 ORTHO05D006318 4.5e-44 181.4 127 69.3
RcHm_v2.0_Chr1g0325871 Rosa chinensis HOM05D005138 ORTHO05D006318 1.0e-43 180.3 127 67.7
Sc10g0004520 Simmondsia chinensis HOM05D005138 ORTHO05D006318 1.0e-43 180.3 125 68.8
FvH4_7g03540 Fragaria vesca HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 67.7
FAN03G2670 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 67.7
FAN06G4838 Fragaria x ananassa HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 67.7
SGA_v2.0_scaffold232G43489 Striga asiatica HOM05D005138 ORTHO05D006318 1.7e-43 179.5 127 68.5
MELO3C012486.2 Cucumis melo HOM05D005138 ORTHO05D006318 2.3e-43 179.1 135 67.4
Glyma.13G193600 Glycine max HOM05D005138 ORTHO05D006318 2.3e-43 179.1 132 65.9
HPP92_021197 Vanilla planifolia HOM05D005138 ORTHO05D006318 2.3e-43 179.1 123 69.9
EL10Ac2g02769 Beta vulgaris HOM05D005138 ORTHO05D000392 2.9e-43 178.7 125 67.2
VMungo1127G1184 Vigna mungo HOM05D005138 ORTHO05D006318 2.9e-43 178.7 127 67.7
Glyma.15G231900 Glycine max HOM05D005138 ORTHO05D006318 3.8e-43 178.3 132 65.2
arahy.Tifrunner.gnm1.ann1.EVE7SV Arachis hypogaea HOM05D005138 ORTHO05D006318 6.6e-43 177.6 129 66.7
arahy.Tifrunner.gnm1.ann1.K7P4IE Arachis hypogaea HOM05D005138 ORTHO05D006318 6.6e-43 177.6 129 66.7
CANSAT56G0322 Cannabis sativa HOM05D005138 ORTHO05D006318 6.6e-43 177.6 127 68.5
FAN10G0593 Fragaria x ananassa HOM05D005138 ORTHO05D006318 8.6e-43 177.2 127 66.9
FAN10G2449 Fragaria x ananassa HOM05D005138 ORTHO05D006318 8.6e-43 177.2 127 66.9
Ah.10g030100 Amaranthus hybridus HOM05D005138 ORTHO05D006318 4.2e-42 174.9 123 67.5
Lalb_Chr03g0032141 Lupinus albus HOM05D005138 ORTHO05D006318 4.2e-42 174.9 133 63.9
Glyma.09G091002 Glycine max HOM05D005138 ORTHO05D006318 7.2e-42 174.1 132 64.4
Hund15745 Selenicereus undatus HOM05D005138 ORTHO05D006318 7.2e-42 174.1 125 68.0
QL04p018722 Quercus lobata HOM05D005138 ORTHO05D006318 9.5e-42 173.7 126 66.7
unitig_899.g15579 Utricularia gibba HOM05D005138 ORTHO05D006318 9.5e-42 173.7 127 68.5
Aqoxy2G00421 Aquilegia oxysepala HOM05D005138 ORTHO05D006318 1.6e-41 172.9 128 66.4
BcaC09g48226 Brassica carinata HOM05D005138 ORTHO05D006318 2.1e-41 172.6 131 64.9
C01p53060 Brassica napus HOM05D005138 ORTHO05D006318 2.1e-41 172.6 131 64.9
C03p45540 Brassica napus HOM05D005138 ORTHO05D006318 2.1e-41 172.6 131 64.9
AUR62031745 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.1e-41 172.6 125 64.8
AUR62032630 Chenopodium quinoa HOM05D005138 ORTHO05D006318 2.1e-41 172.6 125 64.8
Aa31LG3G6480 Aethionema arabicum HOM05D005138 ORTHO05D006318 4.7e-41 171.4 131 64.1
BcaB04g18689 Brassica carinata HOM05D005138 ORTHO05D006318 4.7e-41 171.4 131 64.1
Thhalv10021751m.g Eutrema salsugineum HOM05D005138 ORTHO05D006318 4.7e-41 171.4 131 63.4
Sp3g10480 Schrenkiella parvula HOM05D005138 ORTHO05D006318 4.7e-41 171.4 131 63.4
A03p37550 Brassica napus HOM05D005138 ORTHO05D006318 6.1e-41 171.0 131 64.1
Carub.0003s1162 Capsella rubella HOM05D005138 ORTHO05D006318 8.0e-41 170.6 131 63.4
CARHR086810 Cardamine hirsuta HOM05D005138 ORTHO05D006318 8.0e-41 170.6 131 64.1
MBI13_g09225_MAGBIO Magnolia biondii HOM05D005138 ORTHO05D006318 1.8e-40 169.5 126 63.5
Sabra01G0021400 Salix brachista HOM05D005138 ORTHO05D006318 1.8e-40 169.5 127 62.2
AL3G23920 Arabidopsis lyrata HOM05D005138 ORTHO05D006318 2.3e-40 169.1 131 62.6
AT3G12260 Arabidopsis thaliana HOM05D005138 ORTHO05D006318 2.3e-40 169.1 131 62.6
Potri.001G029900 Populus trichocarpa HOM05D005138 ORTHO05D006318 2.3e-40 169.1 127 61.4
PGSC0003DMG400005271 Solanum tuberosum HOM05D005138 ORTHO05D006318 5.2e-40 167.9 95 86.3
Lj3g0022103 Lotus japonicus HOM05D005138 ORTHO05D006318 1.2e-39 166.8 129 62.8
Ah.12g059980 Amaranthus hybridus HOM05D005138 ORTHO05D006318 1.5e-39 166.4 125 65.6
BolC3t16831H Brassica oleracea HOM05D005138 ORTHO05D006318 3.4e-39 165.2 140 60.7
Peaxi162Scf01042g00115 Petunia axillaris HOM05D005138 ORTHO05D006318 3.4e-39 165.2 130 66.2
Phvul.011G203300 Phaseolus vulgaris HOM05D005138 ORTHO05D006318 4.4e-39 164.9 126 62.7
BraA03t12909Z Brassica rapa HOM05D005138 ORTHO05D006318 5.7e-39 164.5 141 60.3
A05p37100 Brassica napus HOM05D005138 ORTHO05D006318 9.8e-39 163.7 140 59.3
C05p55530 Brassica napus HOM05D005138 ORTHO05D006318 9.8e-39 163.7 140 59.3
BraA05t22507Z Brassica rapa HOM05D005138 ORTHO05D006318 9.8e-39 163.7 140 59.3
BolC1t05249H Brassica oleracea HOM05D005138 ORTHO05D006318 1.3e-38 163.3 144 59.0
Migut.N01855 Erythranthe guttata HOM05D005138 ORTHO05D006318 1.3e-38 163.3 127 63.0
BolC5t34219H Brassica oleracea HOM05D005138 ORTHO05D006318 2.9e-38 162.2 140 58.6
Aqoxy2G00420 Aquilegia oxysepala HOM05D000001 ORTHO05D007291 8.3e-38 160.6 124 63.7
MSTRG.5074 Avicennia marina HOM05D005138 ORTHO05D006318 1.2e-36 156.8 127 60.6
SalBow5G1163 Salvia bowleyana HOM05D005138 ORTHO05D006318 1.5e-34 149.8 166 49.4
ECA248G2587 Erigeron canadensis HOM05D005138 ORTHO05D006318 7.3e-34 147.5 98 70.4
Mapoly0055s0110 Marchantia polymorpha HOM05D005138 ORTHO05D006318 4.4e-31 138.3 121 55.4
Actinidia38920 Actinidia chinensis HOM05D005138 ORTHO05D006318 9.8e-31 137.1 128 57.0
CBR_g52457 Chara braunii HOM05D005138 ORTHO05D006318 1.7e-30 136.3 124 54.8
Pp3c2_3180 Physcomitrium patens HOM05D005138 ORTHO05D006318 3.7e-30 135.2 129 55.0
Pp3c1_37620 Physcomitrium patens HOM05D005138 ORTHO05D006318 1.1e-29 133.7 129 53.5
GSVIVG01036643001 Vitis vinifera HOM05D005138 ORTHO05D006318 1.9e-29 132.9 93 71.0
PGSC0003DMG401025557 Solanum tuberosum HOM05D005138 ORTHO05D006318 3.0e-27 125.6 69 85.5
CAN.G575.4 Capsicum annuum HOM05D005138 ORTHO05D006318 3.1e-24 115.5 74 74.3
SMO364G0517 Selaginella moellendorffii HOM05D005138 ORTHO05D006318 1.1e-21 107.1 125 43.2
Gorai.004G120800 Gossypium raimondii HOM05D005138 ORTHO05D006318 1.3e-19 100.1 71 67.6
COL.COLO4_20706 Corchorus olitorius HOM05D005138 ORTHO05D006318 2.3e-19 99.4 67 73.1
ClCG00G004230 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.0e-19 99.0 60 78.3
ClCG05G026940 Citrullus lanatus HOM05D005138 ORTHO05D006318 3.0e-19 99.0 60 78.3
Gohir.A10G188200 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.1e-18 97.1 71 66.2
Rhsim09G0131900 Rhododendron simsii HOM05D005138 ORTHO05D006318 1.1e-18 97.1 68 66.2
ClCG05G026950 Citrullus lanatus HOM05D005138 ORTHO05D006318 1.9e-18 96.3 72 65.3
Lalb_Chr19g0132971 Lupinus albus HOM05D005138 ORTHO05D006318 1.9e-18 96.3 78 59.0
Lj2A602G38 Lonicera japonica HOM05D005138 ORTHO05D006318 7.3e-18 94.4 67 64.2
Nn7g36804 Nelumbo nucifera HOM05D005138 ORTHO05D006318 7.3e-18 94.4 63 69.8
Gohir.D03G123000 Gossypium hirsutum HOM05D005138 ORTHO05D006318 1.6e-17 93.2 67 68.7
RcHm_v2.0_Chr1g0325941 Rosa chinensis HOM05D005138 ORTHO05D006318 2.1e-17 92.8 71 63.4
BcaC01g04057 Brassica carinata HOM05D005138 ORTHO05D006318 6.2e-17 91.3 72 61.1
COL.COLO4_20705 Corchorus olitorius HOM05D005138 ORTHO05D006318 6.2e-17 91.3 85 57.6
MD07G1046900 Malus domestica HOM05D005138 ORTHO05D006318 8.1e-17 90.9 61 70.5
Lalb_Chr19g0132981 Lupinus albus HOM05D005138 ORTHO05D006318 1.4e-13 80.1 62 62.9
MCO10G366 Micromonas commoda HOM05D005138 ORTHO05D006318 2.1e-12 76.3 124 32.3
Oeu064133.1 Olea europaea HOM05D005138 ORTHO05D006318 6.0e-12 74.7 56 62.5
SEGI_36145 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 2.3e-11 72.8 70 45.7
PGSC0003DMG400003395 Solanum tuberosum HOM05D005138 ORTHO05D006318 8.6e-11 70.9 54 59.3
Atru.chr10.1194 Acer truncatum HOM05D005527 ORTHO05D006480 2.5e-10 69.3 73 50.7
AUR62042115 Chenopodium quinoa HOM05D005138 ORTHO05D006318 8.1e-09 64.3 49 57.1
Cre12.g555250 Chlamydomonas reinhardtii HOM05D005138 ORTHO05D006318 5.2e-08 61.6 106 31.1
SEGI_02182 Sequoiadendron giganteum HOM05D005138 ORTHO05D006318 5.2e-08 61.6 90 32.2
VMungo0464G2031 Vigna mungo HOM05D005138 ORTHO05D011906 2.0e-07 59.7 54 53.7


User provided reference genes

Program Settings