Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1362.14 Capsicum annuum HOM05D003778 ORTHO05D004418 0.0e+00 1172.9 568 100.0
Nitab4.5_0001219g0170 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.7e-297 1024.2 564 86.0
Nitab4.5_0008761g0020 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-292 1008.8 564 84.8
Peaxi162Scf00833g00024 Petunia axillaris HOM05D003778 ORTHO05D004418 1.1e-288 996.1 568 82.9
CAN.G675.20 Capsicum annuum HOM05D003778 ORTHO05D004418 1.4e-288 995.7 570 83.5
Solyc02g069490.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 7.0e-288 993.4 565 83.5
Peaxi162Scf00695g00218 Petunia axillaris HOM05D003778 ORTHO05D004418 2.3e-286 988.4 569 85.6
Sopen02g018630 Solanum pennellii HOM05D003778 ORTHO05D004418 3.6e-284 981.1 571 82.1
PGSC0003DMG400021142 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.3e-283 978.4 571 81.6
Peaxi162Scf00312g00221 Petunia axillaris HOM05D003778 ORTHO05D004418 1.4e-280 969.1 568 84.2
Nitab4.5_0000265g0030 Nicotiana tabacum HOM05D003778 ORTHO05D004418 3.6e-276 954.5 568 79.6
CAN.G79.46 Capsicum annuum HOM05D003778 ORTHO05D004418 6.8e-275 950.3 568 78.5
Peaxi162Scf01123g00017 Petunia axillaris HOM05D003778 ORTHO05D004418 4.9e-273 944.1 561 78.3
CANSAT78G1874 Cannabis sativa HOM05D003778 ORTHO05D004418 3.5e-271 937.9 568 77.3
Haze_11725 Corylus avellana HOM05D003778 ORTHO05D004418 4.6e-271 937.6 568 77.6
QL03p043582 Quercus lobata HOM05D003778 ORTHO05D004418 1.3e-270 936.0 567 77.6
Ciclev10030984m.g Citrus clementina HOM05D003778 ORTHO05D004418 1.6e-268 929.1 568 77.6
CiPaw.06G057600 Carya illinoinensis HOM05D003778 ORTHO05D004418 2.1e-268 928.7 568 77.6
PGSC0003DMG400011801 Solanum tuberosum HOM05D003778 ORTHO05D004418 3.6e-268 927.9 552 78.3
Manes.03G081200 Manihot esculenta HOM05D003778 ORTHO05D004418 4.7e-268 927.5 556 78.4
Sopen02g009490 Solanum pennellii HOM05D003778 ORTHO05D004418 8.1e-268 926.8 551 78.6
arahy.Tifrunner.gnm1.ann1.G65HTE Arachis hypogaea HOM05D003778 ORTHO05D004418 5.2e-267 924.1 568 76.8
MD16G1000400 Malus domestica HOM05D003778 ORTHO05D004418 6.9e-267 923.7 567 76.7
vmacro00468 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 6.9e-267 923.7 564 77.0
PGR004G0624 Punica granatum HOM05D003778 ORTHO05D004418 4.4e-266 921.0 564 76.6
COL.COLO4_27669 Corchorus olitorius HOM05D003778 ORTHO05D004418 5.8e-266 920.6 563 77.4
MD13G1007700 Malus domestica HOM05D003778 ORTHO05D004418 7.6e-266 920.2 567 76.7
Gohir.D13G024700 Gossypium hirsutum HOM05D003778 ORTHO05D004418 9.9e-266 919.8 563 76.7
Gorai.013G027900 Gossypium raimondii HOM05D003778 ORTHO05D004418 1.3e-265 919.5 563 76.7
SGA_v2.0_scaffold223G42894 Striga asiatica HOM05D003778 ORTHO05D004418 1.7e-265 919.1 563 77.1
Sc06g0007850 Simmondsia chinensis HOM05D003778 ORTHO05D004418 2.9e-265 918.3 560 76.1
Gohir.A13G026100 Gossypium hirsutum HOM05D003778 ORTHO05D004418 3.8e-265 917.9 563 76.4
Dinv17604 Davidia involucrata HOM05D003778 ORTHO05D004418 4.9e-265 917.5 568 76.2
TWI77G0069 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 6.4e-265 917.1 568 75.9
Prupe.1G345300 Prunus persica HOM05D003778 ORTHO05D004418 8.4e-265 916.8 567 76.0
Atru.chr11.1231 Acer truncatum HOM05D003778 ORTHO05D004418 2.4e-264 915.2 568 75.4
Atru.chr11.1319 Acer truncatum HOM05D003778 ORTHO05D004418 2.4e-264 915.2 568 75.4
Glyma.11G103500 Glycine max HOM05D003778 ORTHO05D004418 2.4e-264 915.2 568 76.1
Potri.010G170000 Populus trichocarpa HOM05D003778 ORTHO05D004418 2.4e-264 915.2 556 77.5
Sabra08G0063000 Salix brachista HOM05D003778 ORTHO05D004418 7.1e-264 913.7 556 77.3
Potri.008G084800 Populus trichocarpa HOM05D003778 ORTHO05D004418 9.3e-264 913.3 556 77.5
TAR629G2113 Trochodendron aralioides HOM05D003778 ORTHO05D004418 9.3e-264 913.3 568 75.9
Rhsim09G0073500 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.2e-263 912.9 573 75.6
Thecc.02G311500 Theobroma cacao HOM05D003778 ORTHO05D004418 1.6e-263 912.5 568 76.1
TWI74G0502 Tripterygium wilfordii HOM05D003778 ORTHO05D004418 1.6e-263 912.5 568 75.9
Hund24279 Selenicereus undatus HOM05D003778 ORTHO05D004418 2.1e-263 912.1 569 74.9
Solyc02g030170.4 Solanum lycopersicum HOM05D003778 ORTHO05D004418 2.1e-263 912.1 534 79.6
TAR035G0003 Trochodendron aralioides HOM05D003778 ORTHO05D004418 2.7e-263 911.8 568 75.7
VMungo1127G1615 Vigna mungo HOM05D003778 ORTHO05D004418 2.7e-263 911.8 565 75.8
Eucgr.J00851 Eucalyptus grandis HOM05D003778 ORTHO05D004418 3.5e-263 911.4 568 75.7
arahy.Tifrunner.gnm1.ann1.J2YHHP Arachis hypogaea HOM05D003778 ORTHO05D004418 6.0e-263 910.6 568 76.1
Actinidia04080 Actinidia chinensis HOM05D003778 ORTHO05D004418 1.3e-262 909.4 568 75.2
Rhsim09G0073400 Rhododendron simsii HOM05D003778 ORTHO05D004418 1.3e-262 909.4 573 75.4
Duzib248G0532 Durio zibethinus HOM05D003778 ORTHO05D004418 3.9e-262 907.9 563 76.4
SEGI_38803 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 6.6e-262 907.1 560 75.4
SalBow8G3862 Salvia bowleyana HOM05D003778 ORTHO05D004418 1.1e-261 906.4 563 75.7
Lj3g0022719 Lotus japonicus HOM05D003778 ORTHO05D004418 1.5e-261 906.0 568 75.2
CDE05G2073 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.5e-261 905.2 564 75.9
DCAR_002565 Daucus carota HOM05D003778 ORTHO05D004418 3.3e-261 904.8 568 75.7
Cc09_g06490 Coffea canephora HOM05D003778 ORTHO05D004418 4.3e-261 904.4 560 75.7
SalBow2G0375 Salvia bowleyana HOM05D003778 ORTHO05D004418 5.6e-261 904.0 563 75.5
DCAR_030405 Daucus carota HOM05D003778 ORTHO05D004418 7.3e-261 903.7 568 75.4
Sabra10G0129800 Salix brachista HOM05D003778 ORTHO05D004418 7.3e-261 903.7 556 76.4
Phvul.011G031700 Phaseolus vulgaris HOM05D003778 ORTHO05D004418 9.6e-261 903.3 568 74.8
CSS0038233 Camellia sinensis var. sinensis HOM05D003778 ORTHO05D004418 1.6e-260 902.5 568 75.5
ClCG09G004610 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.6e-260 902.5 565 74.9
MELO3C023603.2 Cucumis melo HOM05D003778 ORTHO05D004418 2.1e-260 902.1 565 74.3
Migut.M01947 Erythranthe guttata HOM05D003778 ORTHO05D004418 2.1e-260 902.1 564 75.7
MBI03_g24012_MAGBIO Magnolia biondii HOM05D003778 ORTHO05D004418 2.1e-260 902.1 568 74.8
PSO017G4886 Papaver somniferum HOM05D003778 ORTHO05D004418 2.8e-260 901.7 564 74.8
PSO478G4461 Papaver somniferum HOM05D003778 ORTHO05D004418 2.8e-260 901.7 564 74.8
TPR.G21559 Trifolium pratense HOM05D003778 ORTHO05D004418 3.6e-260 901.4 568 74.6
ECA233G5967 Erigeron canadensis HOM05D003778 ORTHO05D004418 4.8e-260 901.0 559 76.2
Lj6A722T93 Lonicera japonica HOM05D003778 ORTHO05D004418 6.2e-260 900.6 571 75.0
Lalb_Chr01g0001531 Lupinus albus HOM05D003778 ORTHO05D004418 8.1e-260 900.2 568 74.6
AUR62017664 Chenopodium quinoa HOM05D003778 ORTHO05D004418 1.1e-259 899.8 549 76.1
MSTRG.16322 Avicennia marina HOM05D003778 ORTHO05D004418 2.4e-259 898.7 563 75.1
HanXRQChr13g0388101 Helianthus annuus HOM05D003778 ORTHO05D004418 3.1e-259 898.3 562 76.0
Psat7g174000 Pisum sativum HOM05D003778 ORTHO05D004418 4.0e-259 897.9 568 74.1
AUR62015201 Chenopodium quinoa HOM05D003778 ORTHO05D004418 6.9e-259 897.1 549 76.0
Aqoxy3G04278 Aquilegia oxysepala HOM05D003778 ORTHO05D004418 1.2e-258 896.3 568 73.9
CsaV3_7G030530 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.2e-258 896.3 565 74.2
Ah.01g001630 Amaranthus hybridus HOM05D003778 ORTHO05D004418 2.0e-258 895.6 563 74.1
THA.LOC104804923 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.5e-258 894.4 561 74.9
Ca_03035_v3 Cicer arietinum L. HOM05D003778 ORTHO05D004418 5.8e-258 894.0 568 74.3
ATR0618G344 Amborella trichopoda HOM05D003778 ORTHO05D004418 1.7e-257 892.5 568 73.6
HanXRQChr01g0028571 Helianthus annuus HOM05D003778 ORTHO05D004418 2.9e-257 891.7 558 74.9
Os10g0397400 Oryza sativa ssp. japonica HOM05D003778 ORTHO05D004418 2.9e-257 891.7 547 76.2
Lalb_Chr03g0024881 Lupinus albus HOM05D003778 ORTHO05D004418 3.8e-257 891.3 568 74.5
Medtr4g074350 Medicago truncatula HOM05D003778 ORTHO05D004418 3.8e-257 891.3 568 74.5
THA.LOC104815230 Tarenaya hassleriana HOM05D003778 ORTHO05D004418 4.9e-257 891.0 564 73.4
ECA234G2331 Erigeron canadensis HOM05D003778 ORTHO05D004418 6.4e-257 890.6 558 75.1
Zm00001eb228910 Zea mays HOM05D003778 ORTHO05D004418 8.4e-257 890.2 562 75.3
ClCG07G016390 Citrullus lanatus HOM05D003778 ORTHO05D004418 1.1e-256 889.8 568 73.9
CsaV3_4G009240 Cucumis sativus L. HOM05D003778 ORTHO05D004418 1.4e-256 889.4 568 73.6
AL3G33330 Arabidopsis lyrata HOM05D003778 ORTHO05D004418 1.2e-255 886.3 564 73.2
AT3G19820 Arabidopsis thaliana HOM05D003778 ORTHO05D004418 2.7e-255 885.2 564 73.4
Lsat_1_v5_gn_8_32421 Lactuca sativa HOM05D003778 ORTHO05D004418 3.5e-255 884.8 555 75.3
Sed0007506 Sechium edule HOM05D003778 ORTHO05D004418 3.5e-255 884.8 568 72.4
CARHR095330 Cardamine hirsuta HOM05D003778 ORTHO05D004418 6.0e-255 884.0 564 72.9
BcaB06g26051 Brassica carinata HOM05D003778 ORTHO05D004418 7.9e-255 883.6 564 73.2
BolC5t33208H Brassica oleracea HOM05D003778 ORTHO05D004418 7.9e-255 883.6 564 73.4
A01p34930 Brassica napus HOM05D003778 ORTHO05D004418 1.0e-254 883.2 564 73.4
Sp3g17830 Schrenkiella parvula HOM05D003778 ORTHO05D004418 1.0e-254 883.2 564 73.0
BcaC05g28402 Brassica carinata HOM05D003778 ORTHO05D004418 1.3e-254 882.9 564 73.4
A05p29300 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-254 882.9 564 73.4
C05p44820 Brassica napus HOM05D003778 ORTHO05D004418 1.3e-254 882.9 564 73.4
Aa31LG8G6590 Aethionema arabicum HOM05D003778 ORTHO05D004418 3.0e-254 881.7 564 72.9
BraA05t21813Z Brassica rapa HOM05D003778 ORTHO05D004418 3.0e-254 881.7 564 73.2
Thhalv10020412m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 5.1e-254 880.9 564 72.7
BraA01t03576Z Brassica rapa HOM05D003778 ORTHO05D004418 6.7e-254 880.6 564 73.0
Sed0012416 Sechium edule HOM05D003778 ORTHO05D004418 1.1e-253 879.8 565 73.1
Carub.0003s1970 Capsella rubella HOM05D003778 ORTHO05D004418 1.5e-253 879.4 564 72.3
C01p44340 Brassica napus HOM05D003778 ORTHO05D004418 2.5e-253 878.6 564 72.9
BolC1t04399H Brassica oleracea HOM05D003778 ORTHO05D004418 2.5e-253 878.6 564 72.9
FAN07G1289 Fragaria x ananassa HOM05D003778 ORTHO05D004418 5.6e-253 877.5 570 73.5
Sp1g37100 Schrenkiella parvula HOM05D003778 ORTHO05D004418 5.6e-253 877.5 564 72.3
EL10Ac9g22920 Beta vulgaris HOM05D003778 ORTHO05D004418 1.3e-252 876.3 562 72.2
Lsat_1_v5_gn_4_26521 Lactuca sativa HOM05D003778 ORTHO05D004418 2.1e-252 875.5 558 73.8
RcHm_v2.0_Chr4g0446441 Rosa chinensis HOM05D003778 ORTHO05D004418 4.8e-252 874.4 571 72.9
FvH4_4g36730 Fragaria vesca HOM05D003778 ORTHO05D004418 2.4e-251 872.1 573 72.9
FAN12G0530 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.2e-250 869.8 570 73.0
A06p03260 Brassica napus HOM05D003778 ORTHO05D004418 2.0e-250 869.0 564 71.8
BraA06t23537Z Brassica rapa HOM05D003778 ORTHO05D004418 4.5e-250 867.8 564 71.6
Lj6g0014800 Lotus japonicus HOM05D003778 ORTHO05D004418 5.8e-250 867.5 568 72.4
BolC6t35641H Brassica oleracea HOM05D003778 ORTHO05D004418 9.9e-250 866.7 564 72.0
Lj6g0026630 Lotus japonicus HOM05D003778 ORTHO05D004418 1.3e-244 849.7 560 72.0
SMO367G0245 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.5e-242 841.3 567 69.3
FAN17G2175 Fragaria x ananassa HOM05D003778 ORTHO05D004418 1.8e-238 829.3 565 71.7
Pp3c7_650 Physcomitrium patens HOM05D003778 ORTHO05D004418 1.5e-237 826.2 565 68.7
C06p05320 Brassica napus HOM05D003778 ORTHO05D004418 7.4e-237 823.9 524 72.7
AagrBONN_evm.TU.Sc2ySwM_117.797 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.6e-236 822.8 564 67.9
Mapoly0190s0010 Marchantia polymorpha HOM05D003778 ORTHO05D004418 2.7e-231 805.4 565 66.5
BcaC08g43211 Brassica carinata HOM05D003778 ORTHO05D004418 3.6e-231 805.1 565 67.6
HanXRQChr15g0483641 Helianthus annuus HOM05D003778 ORTHO05D004418 1.0e-230 803.5 570 66.3
Lsat_1_v5_gn_3_32901 Lactuca sativa HOM05D003778 ORTHO05D004418 1.1e-227 793.5 558 67.0
Pp3c11_26120 Physcomitrium patens HOM05D003778 ORTHO05D004418 9.1e-227 790.4 564 66.5
MELO3C022613.2 Cucumis melo HOM05D003778 ORTHO05D004418 3.9e-222 775.0 469 76.5
unitig_748.g7356 Utricularia gibba HOM05D003778 ORTHO05D004418 1.0e-217 760.4 560 67.0
AUR62018172 Chenopodium quinoa HOM05D003778 ORTHO05D004418 3.4e-197 692.2 425 75.8
Glyma.12G028300 Glycine max HOM05D003778 ORTHO05D004418 4.4e-197 691.8 418 77.8
AUR62014967 Chenopodium quinoa HOM05D003778 ORTHO05D004418 4.7e-175 618.6 373 75.6
Mapoly0153s0024 Marchantia polymorpha HOM05D003778 ORTHO05D004418 6.2e-175 618.2 545 54.9
GSVIVG01010184001 Vitis vinifera HOM05D003778 ORTHO05D004418 4.0e-174 615.5 560 55.7
Oeu008711.1 Olea europaea HOM05D003778 ORTHO05D004418 1.5e-173 613.6 567 54.7
AagrBONN_evm.TU.Sc2ySwM_344.4140 Anthoceros agrestis HOM05D003778 ORTHO05D004418 1.5e-157 560.5 488 53.5
SEGI_20352 Sequoiadendron giganteum HOM05D003778 ORTHO05D004418 6.6e-153 545.0 522 49.4
CDE05G2099 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 3.3e-152 542.7 329 74.8
vmacro10903 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 7.6e-149 531.6 417 63.5
SMO347G0448 Selaginella moellendorffii HOM05D003778 ORTHO05D004418 4.0e-142 509.2 414 57.0
Nn4g24924 Nelumbo nucifera HOM05D003778 ORTHO05D004418 8.1e-135 485.0 292 74.3
Zm00001eb190720 Zea mays HOM05D003778 ORTHO05D004418 4.5e-133 479.2 304 75.0
Nitab4.5_0000876g0110 Nicotiana tabacum HOM05D003778 ORTHO05D004418 1.6e-127 460.7 568 46.8
Nitab4.5_0012697g0010 Nicotiana tabacum HOM05D003778 ORTHO05D004418 2.4e-126 456.8 567 46.4
CDE05G1908 Ceratophyllum demersum HOM05D003778 ORTHO05D004418 2.6e-109 400.2 468 48.3
CBR_g45591 Chara braunii HOM05D003778 ORTHO05D004418 1.2e-82 311.6 492 36.2
Thhalv10012112m.g Eutrema salsugineum HOM05D003778 ORTHO05D004418 1.7e-71 274.6 213 62.0
C06p05360 Brassica napus HOM05D003778 ORTHO05D004418 2.3e-65 254.2 549 33.0
BcaB04g19062 Brassica carinata HOM05D003778 ORTHO05D004418 7.1e-54 216.1 166 60.8
BcaC08g43207 Brassica carinata HOM05D003778 ORTHO05D004418 7.1e-54 216.1 153 65.4
BolC6t35639H Brassica oleracea HOM05D003778 ORTHO05D004418 2.7e-53 214.2 153 65.4
C03p50680 Brassica napus HOM05D003778 ORTHO05D004418 1.2e-42 178.7 166 57.8
vmacro10902 Vaccinium macrocarpon HOM05D003778 ORTHO05D004418 2.8e-42 177.6 130 68.5
C03p50700 Brassica napus HOM05D003778 ORTHO05D004418 3.6e-42 177.2 166 57.8
BolC3t17355H Brassica oleracea HOM05D003778 ORTHO05D004418 1.4e-41 175.3 166 57.2
BolC3t17357H Brassica oleracea HOM05D003778 ORTHO05D004418 2.4e-41 174.5 166 57.8
GSVIVG01028580001 Vitis vinifera HOM05D003778 ORTHO05D004418 8.9e-41 172.6 133 62.4
GSVIVG01002973001 Vitis vinifera HOM05D003778 ORTHO05D004418 3.4e-40 170.6 128 65.6
Cfa024211 Carpinus fangiana HOM05D003778 ORTHO05D004418 9.9e-40 169.1 319 32.3
Zm00001eb190730 Zea mays HOM05D003778 ORTHO05D004418 1.9e-38 164.9 124 60.5
Cfa023151 Carpinus fangiana HOM05D003778 ORTHO05D004418 1.4e-33 148.7 483 27.1
PGSC0003DMG400004305 Solanum tuberosum HOM05D003778 ORTHO05D004418 2.7e-29 134.4 92 70.7
A03p41410 Brassica napus HOM05D003778 ORTHO05D004418 1.1e-27 129.0 213 37.6
Gorai.005G150900 Gossypium raimondii HOM05D003778 ORTHO05D004418 3.1e-25 120.9 87 60.9
HanXRQChr08g0230901 Helianthus annuus HOM05D003778 ORTHO05D004418 3.1e-25 120.9 75 69.3
GSVIVG01033182001 Vitis vinifera HOM05D003778 ORTHO05D008307 3.8e-23 114.0 67 74.6
BcaC01g03602 Brassica carinata HOM05D003778 ORTHO05D004418 1.8e-20 105.1 184 37.0
A03p41420 Brassica napus HOM05D003778 ORTHO05D004418 1.4e-17 95.5 166 38.6
C06p05290 Brassica napus HOM05D003778 ORTHO05D033430 2.0e-16 91.7 59 67.8
BraA03t13295Z Brassica rapa HOM05D003778 ORTHO05D004418 3.3e-11 74.3 46 63.0
Lj1A1123T22 Lonicera japonica HOM05D000597 ORTHO05D000603 1.9e-06 58.5 154 29.2
THA.LOC104819113 Tarenaya hassleriana HOM05D000597 ORTHO05D000603 4.2e-06 57.4 152 27.6


User provided reference genes

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