Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 7.0e-110 400.6 197 100.0
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 6.4e-55 218.0 154 72.1
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 4.8e-50 201.8 139 74.8
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.2e-46 189.1 133 72.2
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 1.3e-44 183.7 137 69.3
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 5.3e-41 171.8 118 73.7
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 2.5e-38 162.9 118 71.2
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.2e-37 160.6 103 74.8
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.6e-37 160.2 162 57.4
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.7e-35 151.8 119 65.5
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 3.7e-34 149.1 117 67.5
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 6.3e-34 148.3 118 66.9
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 1.4e-33 147.1 106 72.6
Nitab4.5_0017902g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.3e-33 145.2 112 68.8
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.9e-31 139.4 110 68.2
Peaxi162Scf00651g00640 Petunia axillaris HOM05D002660 ORTHO05D003902 1.4e-28 130.6 126 59.5
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.8e-23 112.5 85 67.1
Solyc07g008830.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.8e-23 112.5 75 76.0
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.1e-19 100.9 104 45.2
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.6e-19 99.8 122 44.3
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 5.7e-19 98.6 100 42.0
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 9.7e-19 97.8 160 38.1
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 2.8e-18 96.3 104 41.3
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 2.8e-18 96.3 105 45.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-18 95.9 100 43.0
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-18 95.9 100 43.0
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-18 95.9 100 43.0
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.7e-18 95.9 100 43.0
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 4.8e-18 95.5 100 43.0
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.8e-17 93.6 68 63.2
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 194 30.9
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 194 30.9
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 194 30.9
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.4e-17 93.2 108 41.7
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 3.1e-17 92.8 100 42.0
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 3.1e-17 92.8 104 41.3
Nitab4.5_0000592g0160 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.0e-17 91.7 81 59.3
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.2e-16 90.9 98 42.9
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.5e-16 90.5 153 37.3
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.5e-16 90.5 153 37.3
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-16 90.5 108 38.9
CAN.G505.2 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-16 89.7 59 74.6
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.5e-16 89.4 100 40.0
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.5e-16 89.4 151 37.7
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.5e-16 89.4 151 37.7
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 3.5e-16 89.4 151 37.7
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 4.5e-16 89.0 151 37.1
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 4.5e-16 89.0 151 37.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.5e-16 89.0 113 38.1
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 5.9e-16 88.6 107 41.1
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 7.7e-16 88.2 90 43.3
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.0e-15 87.8 102 39.2
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.7e-15 87.0 146 36.3
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.7e-15 87.0 108 38.9
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 2.2e-15 86.7 83 42.2
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 3.8e-15 85.9 104 40.4
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 5.0e-15 85.5 70 51.4
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-14 84.3 106 37.7
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.5e-14 84.0 143 35.7
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-14 83.6 112 35.7
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-14 83.2 140 34.3
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 7.2e-14 81.6 176 26.7
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 7.2e-14 81.6 94 41.5
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.2e-13 80.9 88 43.2
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.1e-13 80.1 75 40.0
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 2.1e-13 80.1 104 38.5
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.1e-13 80.1 107 37.4
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 6.1e-13 78.6 94 36.2
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 6.1e-13 78.6 146 34.2
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 6.1e-13 78.6 146 34.2
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 8.0e-13 78.2 95 40.0
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 1.4e-12 77.4 75 42.7
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 1.8e-12 77.0 90 38.9
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 3.0e-12 76.3 116 31.0
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.8e-12 74.7 135 36.3
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 8.8e-12 74.7 142 36.6
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.1e-11 74.3 61 52.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-11 73.9 158 31.0
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 5.7e-11 72.0 107 34.6
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 5.7e-11 72.0 141 32.6
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 9.7e-11 71.2 157 29.3
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.3e-10 70.9 57 45.6
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 2.2e-10 70.1 86 41.9
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 4.8e-10 68.9 150 31.3
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.8e-10 68.9 73 41.1
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 4.8e-10 68.9 73 41.1
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 6.3e-10 68.6 81 38.3
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.4e-09 66.6 144 31.9
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.4e-09 66.6 48 56.2
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 3.1e-09 66.2 82 40.2
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 4.1e-09 65.9 63 44.4
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 4.1e-09 65.9 89 38.2
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 5.3e-09 65.5 91 37.4
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 7.0e-09 65.1 67 41.8
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.2e-08 64.3 73 42.5
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.6e-08 63.9 85 32.9
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 2.0e-08 63.5 73 42.5
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.5e-08 62.8 66 42.4
Nitab4.5_0000172g1850 Nicotiana tabacum HOM05D041395 ORTHO05D033997 4.5e-08 62.4 47 59.6
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.9e-08 62.0 73 41.1
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.9e-08 62.0 73 41.1
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 5.9e-08 62.0 73 41.1
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-07 60.8 68 39.7
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.3e-07 60.8 68 39.7
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.3e-07 60.8 68 39.7
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.3e-07 60.8 66 40.9
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.7e-07 60.5 70 41.4
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 2.9e-07 59.7 84 36.9
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 2.9e-07 59.7 84 36.9
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 3.8e-07 59.3 89 37.1
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 3.8e-07 59.3 121 33.9
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 5.0e-07 58.9 89 36.0
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 5.0e-07 58.9 89 36.0
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 5.0e-07 58.9 47 48.9
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 6.5e-07 58.5 71 38.0
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.1e-06 57.8 68 45.6
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-06 57.0 70 42.9
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-06 57.0 55 45.5
Hma1.2p1_1430F.1_g282940 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.9e-06 57.0 131 34.4
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 4.2e-06 55.8 53 41.5
Sc08g0004590 Simmondsia chinensis HOM05D017289 ORTHO05D003902 4.2e-06 55.8 49 55.1
arahy.Tifrunner.gnm1.ann1.PK4DTL Arachis hypogaea HOM05D012916 ORTHO05D014365 5.5e-06 55.5 41 56.1
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 5.5e-06 55.5 89 33.7
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 7.2e-06 55.1 91 35.2
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 9.4e-06 54.7 70 38.6
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 9.4e-06 54.7 131 33.6


User provided reference genes

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