Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 4.1e-66 254.6 130 100.0
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 1.5e-36 156.4 115 73.0
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 1.3e-35 153.3 120 65.8
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.9e-35 151.4 116 69.8
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 6.4e-35 151.0 115 69.6
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 4.1e-34 148.3 131 64.1
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 9.5e-31 137.1 124 58.9
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 2.3e-29 132.5 126 54.8
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 5.2e-29 131.3 115 56.5
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 6.8e-29 131.0 132 55.3
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.5e-28 129.8 127 53.5
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.5e-28 129.8 124 56.5
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 2.0e-28 129.4 126 55.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.6e-28 129.0 124 51.6
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.6e-28 129.0 125 54.4
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 2.6e-28 129.0 115 58.3
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 7.5e-28 127.5 125 54.4
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 7.5e-28 127.5 115 59.1
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 7.5e-28 127.5 115 58.3
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 7.5e-28 127.5 117 56.4
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 9.9e-28 127.1 115 58.3
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.9e-28 127.1 132 53.8
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-27 126.7 121 54.5
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.3e-27 126.7 121 54.5
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 1.3e-27 126.7 115 59.1
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.3e-27 126.7 115 59.1
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.3e-27 126.7 115 59.1
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 1.3e-27 126.7 115 59.1
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 1.3e-27 126.7 121 52.9
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.7e-27 126.3 121 57.9
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 1.7e-27 126.3 115 59.1
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 2.2e-27 125.9 121 57.0
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 2.2e-27 125.9 63 90.5
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 2.2e-27 125.9 121 55.4
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 3.7e-27 125.2 118 56.8
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 3.7e-27 125.2 115 56.5
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 4.9e-27 124.8 121 55.4
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 4.9e-27 124.8 121 56.2
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 8.3e-27 124.0 121 53.7
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.3e-27 124.0 115 59.1
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.3e-27 124.0 115 60.0
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.3e-27 124.0 115 60.0
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-26 123.6 121 53.7
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.1e-26 123.6 121 55.4
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.1e-26 123.6 115 54.8
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.1e-26 123.6 125 53.6
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.4e-26 123.2 121 56.2
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 1.4e-26 123.2 115 55.7
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 1.4e-26 123.2 121 53.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.4e-26 123.2 118 54.2
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.4e-26 123.2 125 52.8
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 1.4e-26 123.2 116 53.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 2.4e-26 122.5 115 54.8
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.2e-26 122.1 115 54.8
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 3.2e-26 122.1 115 54.8
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 4.1e-26 121.7 115 53.9
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 5.4e-26 121.3 121 52.9
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.4e-26 121.3 122 51.6
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 5.4e-26 121.3 115 54.8
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 7.1e-26 120.9 121 52.9
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 7.1e-26 120.9 119 52.1
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 9.2e-26 120.6 115 53.0
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 9.2e-26 120.6 137 52.6
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 9.2e-26 120.6 121 54.5
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 1.2e-25 120.2 121 55.4
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 1.2e-25 120.2 115 55.7
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.2e-25 120.2 131 51.9
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 1.6e-25 119.8 121 54.5
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 1.6e-25 119.8 121 52.9
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.1e-25 119.4 115 54.8
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 2.1e-25 119.4 122 53.3
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 2.1e-25 119.4 115 54.8
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 2.1e-25 119.4 115 54.8
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 2.7e-25 119.0 121 52.1
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 2.7e-25 119.0 115 55.7
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 2.7e-25 119.0 114 54.4
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 3.5e-25 118.6 118 52.5
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.5e-25 118.6 115 53.0
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 3.5e-25 118.6 115 54.8
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 4.6e-25 118.2 121 52.9
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 4.6e-25 118.2 121 52.9
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 4.6e-25 118.2 137 51.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 4.6e-25 118.2 118 55.1
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 4.6e-25 118.2 120 53.3
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 7.8e-25 117.5 117 53.8
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 1.0e-24 117.1 115 53.9
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.0e-24 117.1 117 53.0
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.0e-24 117.1 115 53.9
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 1.0e-24 117.1 131 51.9
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 1.0e-24 117.1 115 53.0
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 1.3e-24 116.7 121 52.9
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 2.3e-24 115.9 121 52.9
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 3.0e-24 115.5 121 52.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.9e-24 115.2 114 55.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 3.9e-24 115.2 117 57.3
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 5.1e-24 114.8 121 51.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 6.6e-24 114.4 121 49.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 6.6e-24 114.4 121 51.2
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 6.6e-24 114.4 121 51.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 8.6e-24 114.0 158 41.1
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 1.1e-23 113.6 115 53.0
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.9e-23 112.8 115 52.2
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.9e-23 112.8 122 49.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.6e-22 109.8 115 48.7
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 6.2e-22 107.8 65 72.3
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.2e-22 107.8 117 45.3
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 8.1e-22 107.5 117 45.3
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 8.1e-22 107.5 113 50.4
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 1.1e-21 107.1 61 77.0
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 5.2e-21 104.8 64 71.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 3.4e-20 102.1 69 60.9
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.4e-20 102.1 114 49.1
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.2e-19 99.4 114 47.4
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 2.9e-19 99.0 118 39.8
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.9e-19 98.2 124 41.9
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 8.4e-19 97.4 123 44.7
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 2.4e-18 95.9 61 67.2
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 7.1e-18 94.4 60 63.3
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.2e-17 93.6 99 47.5
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 4.6e-17 91.7 143 37.1
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 6.0e-17 91.3 60 65.0
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 6.6e-16 87.8 127 36.2
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 2.5e-15 85.9 92 51.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.1e-14 82.8 48 72.9
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 4.8e-14 81.6 61 57.4
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 4.8e-14 81.6 113 35.4
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 8.1e-14 80.9 60 58.3
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 8.1e-14 80.9 116 37.1
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 1.4e-13 80.1 51 64.7
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-12 77.0 72 50.0
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 3.4e-12 75.5 64 53.1
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-11 72.8 67 50.7
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 4.6e-09 65.1 50 52.0
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 1.9e-07 59.7 85 44.7
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 2.5e-07 59.3 51 52.9


User provided reference genes

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