Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G135.37 Capsicum annuum HOM05D002460 ORTHO05D021098 2.1e-95 352.4 185 100.0
CAN.G1231.3 Capsicum annuum HOM05D002460 ORTHO05D021098 5.0e-25 118.6 117 60.7
CAN.G497.28 Capsicum annuum HOM05D002460 ORTHO05D002716 2.0e-21 106.7 116 52.6
CAN.G520.31 Capsicum annuum HOM05D002460 ORTHO05D021098 3.7e-20 102.4 72 73.6
CAN.G93.36 Capsicum annuum HOM05D002460 ORTHO05D021098 3.7e-20 102.4 84 73.8
Nitab4.5_0009717g0030 Nicotiana tabacum HOM05D002460 ORTHO05D002716 1.2e-18 97.4 93 57.0
Sopen02g034290 Solanum pennellii HOM05D002460 ORTHO05D002716 4.5e-18 95.5 67 71.6
PGSC0003DMG400010054 Solanum tuberosum HOM05D002460 ORTHO05D002716 5.9e-18 95.1 67 70.1
Nitab4.5_0001982g0040 Nicotiana tabacum HOM05D002460 ORTHO05D002716 7.7e-18 94.7 79 63.3
CAN.G936.4 Capsicum annuum HOM05D008518 ORTHO05D010253 1.3e-17 94.0 50 92.0
CAN.G108.51 Capsicum annuum HOM05D000045 ORTHO05D011407 8.8e-14 81.3 60 66.7
Lju237C0G7 Lonicera japonica HOM05D002460 ORTHO05D002716 8.8e-14 81.3 113 41.6
Dinv34880 Davidia involucrata HOM05D002460 ORTHO05D002716 2.0e-13 80.1 85 50.6
CAN.G268.14 Capsicum annuum HOM05D002460 ORTHO05D021098 2.6e-13 79.7 56 78.6
Cc07_g04780 Coffea canephora HOM05D002460 ORTHO05D002716 3.4e-13 79.3 85 48.2
CSS0007406 Camellia sinensis var. sinensis HOM05D002460 ORTHO05D002716 4.4e-13 79.0 83 51.8
CSS0020831 Camellia sinensis var. sinensis HOM05D002460 ORTHO05D002716 4.4e-13 79.0 83 51.8
QL11p017890 Quercus lobata HOM05D002460 ORTHO05D002716 7.5e-13 78.2 85 45.9
Actinidia36290 Actinidia chinensis HOM05D002460 ORTHO05D002716 1.3e-12 77.4 85 47.1
Cfa007997 Carpinus fangiana HOM05D002460 ORTHO05D002716 3.7e-12 75.9 85 47.1
Haze_14074 Corylus avellana HOM05D002460 ORTHO05D002716 1.8e-11 73.6 64 56.2
CiPaw.03G007600 Carya illinoinensis HOM05D002460 ORTHO05D002716 4.1e-11 72.4 113 35.4
CiPaw.04G005600 Carya illinoinensis HOM05D002460 ORTHO05D002716 7.0e-11 71.6 64 50.0
Hma1.2p1_1364F.1_g278370 Hydrangea macrophylla HOM05D002460 ORTHO05D002716 1.2e-10 70.9 64 54.7
Peaxi162Scf00020g00192 Petunia axillaris HOM05D002460 ORTHO05D002716 1.6e-10 70.5 80 51.2
Glyma.18G278400 Glycine max HOM05D002460 ORTHO05D002716 3.5e-10 69.3 82 46.3
TAR629G3196 Trochodendron aralioides HOM05D002460 ORTHO05D002716 3.5e-10 69.3 114 36.8
CANSAT64G2241 Cannabis sativa HOM05D002460 ORTHO05D002716 4.5e-10 68.9 114 35.1
Thecc.01G111400 Theobroma cacao HOM05D002460 ORTHO05D002716 7.7e-10 68.2 114 36.0
Rhsim10G0062400 Rhododendron simsii HOM05D002460 ORTHO05D002716 1.0e-09 67.8 76 46.1
MD09G1079500 Malus domestica HOM05D002460 ORTHO05D002716 1.3e-09 67.4 114 33.3
ClCG11G005110 Citrullus lanatus HOM05D002460 ORTHO05D002716 2.3e-09 66.6 115 33.9
arahy.Tifrunner.gnm1.ann1.N66XHA Arachis hypogaea HOM05D002460 ORTHO05D002716 2.9e-09 66.2 115 34.8
Prupe.3G244800 Prunus persica HOM05D002460 ORTHO05D002716 2.9e-09 66.2 114 34.2
MSTRG.2956 Avicennia marina HOM05D002460 ORTHO05D002716 3.8e-09 65.9 102 38.2
CAN.G823.11 Capsicum annuum HOM05D000045 ORTHO05D011407 3.8e-09 65.9 58 53.4
Ciclev10011236m.g Citrus clementina HOM05D002460 ORTHO05D002716 3.8e-09 65.9 64 45.3
arahy.Tifrunner.gnm1.ann1.QRUK19 Arachis hypogaea HOM05D002460 ORTHO05D002716 5.0e-09 65.5 112 36.6
MD17G1069900 Malus domestica HOM05D002460 ORTHO05D002716 5.0e-09 65.5 114 33.3
DCAR_007533 Daucus carota HOM05D002460 ORTHO05D002716 8.6e-09 64.7 67 49.3
Duzib264G0777 Durio zibethinus HOM05D002460 ORTHO05D002716 1.1e-08 64.3 64 43.8
Solyc02g089560.4 Solanum lycopersicum HOM05D002460 ORTHO05D002716 1.1e-08 64.3 47 70.2
GSVIVG01036493001 Vitis vinifera HOM05D002460 ORTHO05D002716 1.1e-08 64.3 114 32.5
AL2G24810 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.5e-08 63.9 151 27.8
Gohir.A11G321400 Gossypium hirsutum HOM05D002460 ORTHO05D002716 1.5e-08 63.9 64 48.4
CAN.G517.13 Capsicum annuum HOM05D000045 ORTHO05D011407 1.9e-08 63.5 46 69.6
ECA232G4177 Erigeron canadensis HOM05D002460 ORTHO05D002716 1.9e-08 63.5 64 51.6
Peaxi162Scf00276g00001 Petunia axillaris HOM05D008518 ORTHO05D010253 1.9e-08 63.5 54 61.1
Sc10g0000410 Simmondsia chinensis HOM05D002460 ORTHO05D002716 1.9e-08 63.5 64 50.0
COL.COLO4_11027 Corchorus olitorius HOM05D002460 ORTHO05D002716 3.2e-08 62.8 85 36.5
Manes.01G106400 Manihot esculenta HOM05D002460 ORTHO05D002716 3.2e-08 62.8 114 32.5
Manes.02G063016 Manihot esculenta HOM05D002460 ORTHO05D002716 3.2e-08 62.8 114 33.3
CsaV3_5G038850 Cucumis sativus L. HOM05D002460 ORTHO05D002716 5.5e-08 62.0 115 31.3
FvH4_6g45820 Fragaria vesca HOM05D002460 ORTHO05D002716 5.5e-08 62.0 114 30.7
FAN14G1596 Fragaria x ananassa HOM05D002460 ORTHO05D002716 5.5e-08 62.0 114 30.7
MBI07_g28242_MAGBIO Magnolia biondii HOM05D002460 ORTHO05D002716 5.5e-08 62.0 106 36.8
Sed0014518 Sechium edule HOM05D002460 ORTHO05D002716 5.5e-08 62.0 115 32.2
Carub.0006s1417 Capsella rubella HOM05D002460 ORTHO05D002716 7.2e-08 61.6 113 31.0
Lsat_1_v5_gn_4_175101 Lactuca sativa HOM05D002460 ORTHO05D002716 7.2e-08 61.6 65 49.2
Nn1g07568 Nelumbo nucifera HOM05D002460 ORTHO05D002716 7.2e-08 61.6 86 39.5
Duzib187G0387 Durio zibethinus HOM05D002460 ORTHO05D002716 9.5e-08 61.2 85 37.6
Gohir.D11G340500 Gossypium hirsutum HOM05D002460 ORTHO05D002716 9.5e-08 61.2 115 33.9
Gorai.007G370400 Gossypium raimondii HOM05D002460 ORTHO05D002716 9.5e-08 61.2 115 33.9
Lj1g0004961 Lotus japonicus HOM05D002460 ORTHO05D002716 9.5e-08 61.2 76 42.1
MELO3C022082.2 Cucumis melo HOM05D002460 ORTHO05D002716 1.2e-07 60.8 113 31.0
SalBow1G4744 Salvia bowleyana HOM05D002460 ORTHO05D002716 1.2e-07 60.8 76 44.7
SalBow1G8292 Salvia bowleyana HOM05D002460 ORTHO05D002716 1.2e-07 60.8 76 44.7
Sed0024220 Sechium edule HOM05D002460 ORTHO05D002716 2.1e-07 60.1 61 45.9
TWI60G1031 Tripterygium wilfordii HOM05D002460 ORTHO05D002716 2.8e-07 59.7 93 32.3
AT3G02490 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 3.6e-07 59.3 113 31.9
CARHR076470 Cardamine hirsuta HOM05D002460 ORTHO05D002716 3.6e-07 59.3 113 32.7
Nitab4.5_0007303g0080 Nicotiana tabacum HOM05D008518 ORTHO05D010253 3.6e-07 59.3 51 56.9
PGR042G1318 Punica granatum HOM05D002460 ORTHO05D002716 3.6e-07 59.3 85 31.8
Ca_06715_v3 Cicer arietinum L. HOM05D002460 ORTHO05D002716 4.7e-07 58.9 114 34.2
VMungo1383G0633 Vigna mungo HOM05D002460 ORTHO05D002716 4.7e-07 58.9 115 37.4
Carub.0003s0159 Capsella rubella HOM05D002460 ORTHO05D002716 6.1e-07 58.5 112 33.0
Migut.H00563 Erythranthe guttata HOM05D002460 ORTHO05D002716 6.1e-07 58.5 68 42.6
RcHm_v2.0_Chr2g0164021 Rosa chinensis HOM05D002460 ORTHO05D002716 6.1e-07 58.5 114 30.7
SGA_v2.0_scaffold52G19036 Striga asiatica HOM05D002460 ORTHO05D002716 6.1e-07 58.5 93 38.7
AT5G15980 Arabidopsis thaliana HOM05D002460 ORTHO05D002716 8.0e-07 58.2 113 28.3
Phvul.008G022600 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 8.0e-07 58.2 64 48.4
AUR62009436 Chenopodium quinoa HOM05D002460 ORTHO05D002716 1.0e-06 57.8 119 31.9
AL6G26850 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 1.4e-06 57.4 76 36.8
AUR62023116 Chenopodium quinoa HOM05D002460 ORTHO05D002716 1.4e-06 57.4 118 30.5
HanXRQChr09g0263281 Helianthus annuus HOM05D002460 ORTHO05D002716 1.4e-06 57.4 113 31.9
Glyma.08G255500 Glycine max HOM05D002460 ORTHO05D002716 1.8e-06 57.0 64 50.0
Phvul.007G278400 Phaseolus vulgaris HOM05D002460 ORTHO05D002716 2.3e-06 56.6 64 48.4
TPR.G3245 Trifolium pratense HOM05D002460 ORTHO05D002716 2.3e-06 56.6 86 36.0
CARHR197330 Cardamine hirsuta HOM05D002460 ORTHO05D002716 3.0e-06 56.2 113 28.3
Psat3g192880 Pisum sativum HOM05D002460 ORTHO05D002716 3.0e-06 56.2 76 39.5
Psat4g181360 Pisum sativum HOM05D002460 ORTHO05D002716 3.0e-06 56.2 76 39.5
Potri.004G108000 Populus trichocarpa HOM05D002460 ORTHO05D002716 3.0e-06 56.2 114 33.3
Sabra17G0090700 Salix brachista HOM05D002460 ORTHO05D002716 3.0e-06 56.2 60 45.0
unitig_578.g16178 Utricularia gibba HOM05D002460 ORTHO05D002716 3.0e-06 56.2 73 37.0
AL3G11810 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 4.0e-06 55.8 113 29.2
Cpa.g.sc70.3 Carica papaya HOM05D002460 ORTHO05D002716 4.0e-06 55.8 113 29.2
Thhalv10012887m.g Eutrema salsugineum HOM05D002460 ORTHO05D002716 4.0e-06 55.8 76 35.5
FAN02G4324 Fragaria x ananassa HOM05D002460 ORTHO05D002716 4.0e-06 55.8 114 28.9
Aa31LG5G12980 Aethionema arabicum HOM05D002460 ORTHO05D002716 5.2e-06 55.5 117 29.1
FAN05G1792 Fragaria x ananassa HOM05D002460 ORTHO05D002716 5.2e-06 55.5 114 28.9
Nitab4.5_0000759g0030 Nicotiana tabacum HOM05D008518 ORTHO05D010253 5.2e-06 55.5 34 79.4
Nitab4.5_0005347g0050 Nicotiana tabacum HOM05D008518 ORTHO05D010253 5.2e-06 55.5 48 58.3
Peaxi162Scf00057g00055 Petunia axillaris HOM05D008518 ORTHO05D010253 6.8e-06 55.1 46 58.7
Sp3g01530 Schrenkiella parvula HOM05D002460 ORTHO05D002716 6.8e-06 55.1 90 34.4
AL7G45630 Arabidopsis lyrata HOM05D002460 ORTHO05D002716 8.8e-06 54.7 113 29.2
Peaxi162Scf00044g00179 Petunia axillaris HOM05D008518 ORTHO05D010253 8.8e-06 54.7 50 60.0


User provided reference genes

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