Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.80 Capsicum annuum HOM05D003698 ORTHO05D004320 6.6e-45 183.7 96 100.0
Peaxi162Scf00397g00424 Petunia axillaris HOM05D003698 ORTHO05D004320 1.9e-23 112.5 63 92.1
Dinv32446 Davidia involucrata HOM05D003698 ORTHO05D004320 3.2e-23 111.7 61 93.4
Solyc05g048760.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 3.2e-23 111.7 63 90.5
arahy.Tifrunner.gnm1.ann1.51RIH8 Arachis hypogaea HOM05D003698 ORTHO05D004320 4.1e-23 111.3 62 91.9
arahy.Tifrunner.gnm1.ann1.L2MSK1 Arachis hypogaea HOM05D003698 ORTHO05D004320 4.1e-23 111.3 62 91.9
Glyma.09G262400 Glycine max HOM05D003698 ORTHO05D004320 4.1e-23 111.3 62 90.3
Glyma.18G229800 Glycine max HOM05D003698 ORTHO05D004320 4.1e-23 111.3 62 90.3
Nitab4.5_0001702g0210 Nicotiana tabacum HOM05D003698 ORTHO05D004320 5.4e-23 110.9 63 90.5
Nitab4.5_0010827g0020 Nicotiana tabacum HOM05D003698 ORTHO05D004320 5.4e-23 110.9 63 90.5
Phvul.008G068100 Phaseolus vulgaris HOM05D003698 ORTHO05D004320 9.2e-23 110.2 62 90.3
CSS0014093 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 1.2e-22 109.8 61 90.2
HanXRQChr06g0169891 Helianthus annuus HOM05D003698 ORTHO05D004320 1.2e-22 109.8 61 91.8
Nitab4.5_0010110g0030 Nicotiana tabacum HOM05D003698 ORTHO05D004320 1.2e-22 109.8 62 90.3
Solyc08g008670.3 Solanum lycopersicum HOM05D003698 ORTHO05D004320 1.2e-22 109.8 62 90.3
Sopen08g004500 Solanum pennellii HOM05D003698 ORTHO05D004320 1.2e-22 109.8 62 90.3
PGSC0003DMG400021636 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.6e-22 109.4 62 88.7
Gorai.008G117900 Gossypium raimondii HOM05D003698 ORTHO05D004320 2.1e-22 109.0 61 88.5
Gohir.A12G104900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 2.7e-22 108.6 61 86.9
Manes.05G037500 Manihot esculenta HOM05D003698 ORTHO05D004320 2.7e-22 108.6 63 85.7
Manes.01G259900 Manihot esculenta HOM05D003698 ORTHO05D004320 3.5e-22 108.2 63 85.7
Atru.chr5.444 Acer truncatum HOM05D003698 ORTHO05D004320 4.6e-22 107.8 61 85.2
Migut.N01427 Erythranthe guttata HOM05D003698 ORTHO05D004320 4.6e-22 107.8 62 83.9
CsaV3_5G014110 Cucumis sativus L. HOM05D003698 ORTHO05D004320 6.0e-22 107.5 61 86.9
Sopen05g028080 Solanum pennellii HOM05D003698 ORTHO05D004320 6.0e-22 107.5 62 88.7
MSTRG.4868 Avicennia marina HOM05D003698 ORTHO05D004320 7.8e-22 107.1 61 88.5
Lalb_Chr04g0256721 Lupinus albus HOM05D003698 ORTHO05D004320 7.8e-22 107.1 62 88.7
Psat3g111000 Pisum sativum HOM05D003698 ORTHO05D004320 7.8e-22 107.1 62 87.1
VMungo1383G3090 Vigna mungo HOM05D003698 ORTHO05D004320 7.8e-22 107.1 62 85.5
Haze_24893 Corylus avellana HOM05D003698 ORTHO05D004320 1.0e-21 106.7 61 85.2
MELO3C026482.2 Cucumis melo HOM05D003698 ORTHO05D004320 1.0e-21 106.7 61 86.9
Dinv43781 Davidia involucrata HOM05D003698 ORTHO05D004320 1.0e-21 106.7 62 85.5
ClCG11G000500 Citrullus lanatus HOM05D003698 ORTHO05D004320 1.3e-21 106.3 61 86.9
COL.COLO4_12672 Corchorus olitorius HOM05D003698 ORTHO05D004320 1.3e-21 106.3 61 86.9
Lj1g0021860 Lotus japonicus HOM05D003698 ORTHO05D004320 1.3e-21 106.3 62 87.1
Thecc.01G363600 Theobroma cacao HOM05D003698 ORTHO05D004320 1.3e-21 106.3 61 86.9
TPR.G40455 Trifolium pratense HOM05D003698 ORTHO05D004320 1.3e-21 106.3 62 85.5
CiPaw.01G057600 Carya illinoinensis HOM05D003698 ORTHO05D004320 1.7e-21 105.9 62 85.5
Ciclev10024269m.g Citrus clementina HOM05D003698 ORTHO05D004320 1.7e-21 105.9 64 81.2
ECA236G4925 Erigeron canadensis HOM05D003698 ORTHO05D004320 1.7e-21 105.9 61 88.5
Gohir.A08G129900 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.7e-21 105.9 61 85.2
Gohir.D08G151400 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.7e-21 105.9 61 85.2
Gohir.D12G108800 Gossypium hirsutum HOM05D003698 ORTHO05D004320 1.7e-21 105.9 61 86.9
Gorai.004G157100 Gossypium raimondii HOM05D003698 ORTHO05D004320 1.7e-21 105.9 61 85.2
Cfa003959 Carpinus fangiana HOM05D003698 ORTHO05D004320 2.3e-21 105.5 61 85.2
SGA_v2.0_scaffold43G16443 Striga asiatica HOM05D003698 ORTHO05D004320 2.3e-21 105.5 61 86.9
CiPaw.02G028200 Carya illinoinensis HOM05D003698 ORTHO05D004320 3.0e-21 105.1 61 88.5
PGR042G0708 Punica granatum HOM05D003698 ORTHO05D004320 3.0e-21 105.1 61 86.9
GSVIVG01026838001 Vitis vinifera HOM05D003698 ORTHO05D004320 3.0e-21 105.1 61 85.2
MSTRG.28213 Avicennia marina HOM05D003698 ORTHO05D004320 3.9e-21 104.8 62 85.5
QL08p049567 Quercus lobata HOM05D003698 ORTHO05D004320 3.9e-21 104.8 61 83.6
Rhsim07G0018200 Rhododendron simsii HOM05D003698 ORTHO05D004320 3.9e-21 104.8 61 85.2
MBI18_g09776_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 5.1e-21 104.4 61 88.5
MD01G1053400 Malus domestica HOM05D003698 ORTHO05D004320 5.1e-21 104.4 61 82.0
Solyc05g046340.2 Solanum lycopersicum HOM05D003698 ORTHO05D004320 5.1e-21 104.4 61 86.9
TWI14G1008 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.1e-21 104.4 61 83.6
Peaxi162Scf00246g01118 Petunia axillaris HOM05D003698 ORTHO05D004320 6.6e-21 104.0 60 90.0
Sed0025976 Sechium edule HOM05D003698 ORTHO05D004320 6.6e-21 104.0 61 86.9
TAR629G2702 Trochodendron aralioides HOM05D003698 ORTHO05D004320 6.6e-21 104.0 61 85.2
A03p25370 Brassica napus HOM05D003698 ORTHO05D004320 8.6e-21 103.6 62 82.3
Nn6g33536 Nelumbo nucifera HOM05D003698 ORTHO05D004320 8.6e-21 103.6 61 83.6
Potri.014G080500 Populus trichocarpa HOM05D003698 ORTHO05D004320 8.6e-21 103.6 61 83.6
SGA_v2.0_scaffold11G05655 Striga asiatica HOM05D003698 ORTHO05D004320 8.6e-21 103.6 62 83.9
vmacro20957 Vaccinium macrocarpon HOM05D003698 ORTHO05D004320 8.6e-21 103.6 61 86.9
Duzib133G0563 Durio zibethinus HOM05D003698 ORTHO05D004320 1.1e-20 103.2 61 83.6
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 1.1e-20 103.2 61 86.9
PGSC0003DMG400013702 Solanum tuberosum HOM05D003698 ORTHO05D004320 1.1e-20 103.2 61 85.2
Aqoxy7G00375 Aquilegia oxysepala HOM05D003698 ORTHO05D004320 1.5e-20 102.8 61 85.2
Ca_07888_v3 Cicer arietinum L. HOM05D003698 ORTHO05D004320 1.5e-20 102.8 62 80.6
Oeu014677.1 Olea europaea HOM05D003698 ORTHO05D004320 1.5e-20 102.8 60 81.7
CANSAT56G2897 Cannabis sativa HOM05D003698 ORTHO05D004320 1.9e-20 102.4 61 82.0
PGR044G0179 Punica granatum HOM05D003698 ORTHO05D004320 1.9e-20 102.4 62 83.9
Sabra14G0058400 Salix brachista HOM05D003698 ORTHO05D004320 1.9e-20 102.4 61 82.0
BcaC01g05105 Brassica carinata HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
A05p05780 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
C03p30280 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
C04p06720 Brassica napus HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
BolC3t15377H Brassica oleracea HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
BolC4t22293H Brassica oleracea HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
BraA03t11743Z Brassica rapa HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
BraA05t19544Z Brassica rapa HOM05D003698 ORTHO05D004320 2.5e-20 102.1 62 80.6
MBI17_g19515_MAGBIO Magnolia biondii HOM05D003698 ORTHO05D004320 2.5e-20 102.1 61 83.6
unitig_22.g6808 Utricularia gibba HOM05D003698 ORTHO05D004320 2.5e-20 102.1 61 83.6
Actinidia09997 Actinidia chinensis HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 80.3
Cc02_g37580 Coffea canephora HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 83.6
FvH4_7g13630 Fragaria vesca HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 83.6
FAN01G1997 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 83.6
FAN06G0259 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 83.6
FAN06G0644 Fragaria x ananassa HOM05D003698 ORTHO05D004320 3.3e-20 101.7 61 83.6
FAN10G2510 Fragaria x ananassa HOM05D004612 ORTHO05D004940 3.3e-20 101.7 61 83.6
BcaB01g03252 Brassica carinata HOM05D003698 ORTHO05D004320 4.3e-20 101.3 61 82.0
BcaB02g09006 Brassica carinata HOM05D003698 ORTHO05D004320 4.3e-20 101.3 62 80.6
Eucgr.E00182 Eucalyptus grandis HOM05D003698 ORTHO05D004320 5.6e-20 100.9 61 85.2
Hma1.2p1_0033F.1_g020410 Hydrangea macrophylla HOM05D003698 ORTHO05D004320 5.6e-20 100.9 61 83.6
Nn1g01429 Nelumbo nucifera HOM05D003698 ORTHO05D004320 5.6e-20 100.9 61 83.6
SalBow5G4069 Salvia bowleyana HOM05D003698 ORTHO05D004320 5.6e-20 100.9 62 77.4
SalBow5G5099 Salvia bowleyana HOM05D003698 ORTHO05D004320 5.6e-20 100.9 62 77.4
TWI59G0409 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.6e-20 100.9 61 82.0
TWI59G0950 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 5.6e-20 100.9 61 82.0
Medtr7g076670 Medicago truncatula HOM05D003698 ORTHO05D004320 7.3e-20 100.5 62 82.3
Prupe.2G162400 Prunus persica HOM05D003698 ORTHO05D004320 7.3e-20 100.5 61 82.0
Sopen05g027620 Solanum pennellii HOM05D003698 ORTHO05D004320 7.3e-20 100.5 61 83.6
Cpa.g.c40434 Carica papaya HOM05D003698 ORTHO05D004320 9.5e-20 100.1 63 81.0
CDE08G1212 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 9.5e-20 100.1 61 80.3
Dinv43783 Davidia involucrata HOM05D003698 ORTHO05D004320 9.5e-20 100.1 62 80.6
Thhalv10001604m.g Eutrema salsugineum HOM05D003698 ORTHO05D004320 9.5e-20 100.1 62 79.0
Potri.014G080300 Populus trichocarpa HOM05D003698 ORTHO05D004320 9.5e-20 100.1 61 80.3
THA.LOC104827595 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 1.2e-19 99.8 61 80.3
PSO478G0134 Papaver somniferum HOM05D003698 ORTHO05D004320 1.6e-19 99.4 61 80.3
PSO782G3808 Papaver somniferum HOM05D003698 ORTHO05D004320 1.6e-19 99.4 61 80.3
Aa31LG1G27240 Aethionema arabicum HOM05D003698 ORTHO05D004320 2.1e-19 99.0 61 78.7
AL4G44990 Arabidopsis lyrata HOM05D003698 ORTHO05D004320 2.1e-19 99.0 62 79.0
BcaC02g12181 Brassica carinata HOM05D003698 ORTHO05D004320 2.1e-19 99.0 62 79.0
MD07G1141700 Malus domestica HOM05D003698 ORTHO05D004320 2.8e-19 98.6 61 80.3
Hund16943 Selenicereus undatus HOM05D003698 ORTHO05D004320 2.8e-19 98.6 61 82.0
CDE05G2621 Ceratophyllum demersum HOM05D003698 ORTHO05D004320 3.6e-19 98.2 62 79.0
TWI59G0439 Tripterygium wilfordii HOM05D003698 ORTHO05D004320 3.6e-19 98.2 61 80.3
AT2G45790 Arabidopsis thaliana HOM05D003698 ORTHO05D004320 4.7e-19 97.8 62 77.4
Carub.0004s2849 Capsella rubella HOM05D003698 ORTHO05D004320 4.7e-19 97.8 62 77.4
CARHR141060 Cardamine hirsuta HOM05D003698 ORTHO05D004320 4.7e-19 97.8 62 77.4
Sp4g27860 Schrenkiella parvula HOM05D003698 ORTHO05D004320 4.7e-19 97.8 62 77.4
THA.LOC104817282 Tarenaya hassleriana HOM05D003698 ORTHO05D004320 4.7e-19 97.8 61 80.3
AagrBONN_evm.TU.Sc2ySwM_117.907 Anthoceros agrestis HOM05D003698 ORTHO05D004320 6.2e-19 97.4 63 76.2
RcHm_v2.0_Chr1g0353671 Rosa chinensis HOM05D003698 ORTHO05D004320 6.2e-19 97.4 61 80.3
EL10Ac1g02076 Beta vulgaris HOM05D003698 ORTHO05D004320 1.1e-18 96.7 57 82.5
AUR62036720 Chenopodium quinoa HOM05D003698 ORTHO05D004320 1.1e-18 96.7 57 84.2
Lj7A516T66 Lonicera japonica HOM05D003698 ORTHO05D004320 3.1e-18 95.1 62 80.6
Os04g0682300 Oryza sativa ssp. japonica HOM05D003698 ORTHO05D004320 6.8e-18 94.0 63 77.8
BcaC02g07054 Brassica carinata HOM05D003698 ORTHO05D004320 1.2e-17 93.2 61 75.4
C04p71840 Brassica napus HOM05D003698 ORTHO05D004320 1.2e-17 93.2 62 74.2
BolC4t28682H Brassica oleracea HOM05D003698 ORTHO05D004320 1.2e-17 93.2 62 74.2
Zm00001eb065790 Zea mays HOM05D003698 ORTHO05D004320 2.0e-17 92.4 60 78.3
Mapoly0004s0121 Marchantia polymorpha HOM05D003698 ORTHO05D004320 2.6e-17 92.0 56 82.1
ATR0680G146 Amborella trichopoda HOM05D003698 ORTHO05D004320 3.4e-17 91.7 61 75.4
A04p34040 Brassica napus HOM05D003698 ORTHO05D004320 3.4e-17 91.7 62 74.2
BraA04t18865Z Brassica rapa HOM05D003698 ORTHO05D004320 3.4e-17 91.7 62 74.2
Ah.13g077050 Amaranthus hybridus HOM05D003698 ORTHO05D004320 5.8e-17 90.9 57 78.9
SHI30460 Sapria himalayana HOM05D003698 ORTHO05D004320 1.3e-16 89.7 58 77.6
Pp3c23_11670 Physcomitrium patens HOM05D003698 ORTHO05D004320 3.7e-16 88.2 57 75.4
SMO367G1007 Selaginella moellendorffii HOM05D003698 ORTHO05D004320 1.1e-15 86.7 52 82.7
Cre14.g626900 Chlamydomonas reinhardtii HOM05D003698 ORTHO05D004320 7.1e-15 84.0 51 82.4
CBR_g41657 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-14 83.2 57 71.9
CBR_g44345 Chara braunii HOM05D003698 ORTHO05D004320 1.2e-14 83.2 57 71.9
PRCOL_00001907 Prasinoderma coloniale HOM05D003698 ORTHO05D004320 1.2e-14 83.2 54 75.9
CBR_g4022 Chara braunii HOM05D003698 ORTHO05D004320 1.7e-13 79.3 55 70.9
RhsimUnG0002300 Rhododendron simsii HOM05D003698 ORTHO05D004320 1.9e-12 75.9 77 59.7
CSS0039842 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 2.5e-12 75.5 61 70.5
PGSC0003DMG400005806 Solanum tuberosum HOM05D003698 ORTHO05D004320 7.3e-12 73.9 62 67.7
MCO01G022 Micromonas commoda HOM05D003698 ORTHO05D004320 1.2e-11 73.2 60 58.3
TPR.G18261 Trifolium pratense HOM05D003698 ORTHO05D004320 2.8e-11 72.0 62 64.5
arahy.Tifrunner.gnm1.ann1.0R79PA Arachis hypogaea HOM05D003698 ORTHO05D004320 1.1e-10 70.1 40 90.0
HanXRQChr04g0121661 Helianthus annuus HOM05D003698 ORTHO05D004320 1.2e-09 66.6 36 94.4
Lsat_1_v5_gn_7_5261 Lactuca sativa HOM05D003698 ORTHO05D004320 4.4e-09 64.7 39 79.5
Haze_02709 Corylus avellana HOM05D050389 ORTHO05D165297 1.7e-08 62.8 38 78.9
PGR044G1122 Punica granatum HOM05D003698 ORTHO05D004320 4.9e-08 61.2 38 76.3
Cfa027079 Carpinus fangiana HOM05D003698 ORTHO05D004320 1.4e-07 59.7 60 51.7
CSS0025539 Camellia sinensis var. sinensis HOM05D003698 ORTHO05D004320 9.3e-07 57.0 33 84.8
Oeu014681.1 Olea europaea HOM05D003698 ORTHO05D004320 1.6e-06 56.2 37 67.6
EL10Ac7g16340 Beta vulgaris HOM05D003698 ORTHO05D004320 2.1e-06 55.8 35 77.1
DCAR_008599 Daucus carota HOM05D003698 ORTHO05D004320 7.8e-06 53.9 33 81.8


User provided reference genes

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