Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 2.7e-45 184.9 87 100.0
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.0e-32 142.1 87 79.3
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 1.7e-28 129.0 117 59.8
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 1.7e-28 129.0 137 53.3
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 1.9e-22 109.0 82 69.5
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 9.2e-22 106.7 58 86.2
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 1.3e-20 102.8 53 94.3
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 1.3e-20 102.8 53 94.3
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.2e-18 96.3 53 84.9
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 1.2e-18 96.3 49 93.9
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 1.6e-18 95.9 46 95.7
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 4.7e-18 94.4 48 93.8
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.4e-17 92.8 48 89.6
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 3.1e-17 91.7 52 86.5
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.0e-17 91.3 45 91.1
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 3.4e-16 88.2 44 93.2
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 2.2e-15 85.5 48 85.4
Nitab4.5_0003101g0110 Nicotiana tabacum HOM05D008354 ORTHO05D010055 4.9e-15 84.3 44 86.4
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 1.1e-14 83.2 46 89.1
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.7e-12 75.9 41 85.4
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 1.7e-12 75.9 172 36.6
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 1.1e-11 73.2 83 51.8
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 1.9e-11 72.4 47 72.3
CAN.G82.6 Capsicum annuum HOM05D000011 ORTHO05D000018 2.5e-11 72.0 37 91.9
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 9.6e-11 70.1 37 89.2
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 1.3e-10 69.7 38 86.8
Peaxi162Scf00080g00519 Petunia axillaris HOM05D001966 ORTHO05D010055 1.6e-10 69.3 42 76.2
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 2.1e-10 68.9 34 88.2
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 2.8e-10 68.6 40 80.0
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 4.8e-10 67.8 53 66.0
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 6.2e-10 67.4 38 84.2
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 6.2e-10 67.4 38 84.2
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 6.2e-10 67.4 84 50.0
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 1.4e-09 66.2 33 87.9
Nitab4.5_0000066g0170 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.4e-09 66.2 40 72.5
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 2.4e-09 65.5 36 83.3
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 3.1e-09 65.1 30 93.3
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.1e-09 65.1 60 56.7
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 3.1e-09 65.1 60 56.7
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 3.1e-09 65.1 30 93.3
CDE02G0533 Ceratophyllum demersum HOM05D008037 ORTHO05D004271 3.1e-09 65.1 30 93.3
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 3.1e-09 65.1 40 80.0
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 3.1e-09 65.1 30 93.3
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 3.1e-09 65.1 30 93.3
Solyc00g500344.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 3.1e-09 65.1 30 93.3
arahy.Tifrunner.gnm1.ann1.R58SNE Arachis hypogaea HOM05D008016 ORTHO05D010055 4.0e-09 64.7 53 67.9
Nitab4.5_0012234g0010 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.0e-09 64.7 30 90.0
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 6.9e-09 63.9 51 64.7
Nitab4.5_0001727g0130 Nicotiana tabacum HOM05D008037 ORTHO05D004271 9.0e-09 63.5 30 90.0
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 9.0e-09 63.5 33 84.8
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.2e-08 63.2 33 84.8
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 1.2e-08 63.2 33 84.8
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.5e-08 62.8 31 87.1
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 1.5e-08 62.8 65 52.3
CAN.G386.21 Capsicum annuum HOM05D001966 ORTHO05D010055 2.0e-08 62.4 48 64.6
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 2.6e-08 62.0 30 90.0
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 2.6e-08 62.0 30 90.0
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 2.6e-08 62.0 30 90.0
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 2.6e-08 62.0 30 90.0
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 2.6e-08 62.0 30 90.0
Potri.008G221801 Populus trichocarpa HOM05D008037 ORTHO05D004271 3.4e-08 61.6 30 86.7
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 3.4e-08 61.6 33 84.8
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 3.4e-08 61.6 34 79.4
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 4.4e-08 61.2 34 79.4
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 4.4e-08 61.2 31 87.1
arahy.Tifrunner.gnm1.ann1.PRQI1Y Arachis hypogaea HOM05D008016 ORTHO05D010588 7.6e-08 60.5 38 73.7
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 7.6e-08 60.5 29 93.1
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.6e-08 60.5 30 86.7
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 9.9e-08 60.1 33 78.8
Nitab4.5_0005831g0030 Nicotiana tabacum HOM05D001090 ORTHO05D006167 1.3e-07 59.7 44 65.9
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 1.7e-07 59.3 41 65.9
arahy.Tifrunner.gnm1.ann1.V4KXIX Arachis hypogaea HOM05D009726 ORTHO05D010588 2.2e-07 58.9 38 73.7
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 2.9e-07 58.5 30 83.3
EL10Ac5g11360 Beta vulgaris HOM05D008037 ORTHO05D004271 2.9e-07 58.5 31 80.6
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 3.8e-07 58.2 30 86.7
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 3.8e-07 58.2 30 83.3
Peaxi162Scf00210g00153 Petunia axillaris HOM05D008037 ORTHO05D004271 3.8e-07 58.2 30 83.3
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 3.8e-07 58.2 30 83.3
arahy.Tifrunner.gnm1.ann1.61DFKT Arachis hypogaea HOM05D008037 ORTHO05D004271 4.9e-07 57.8 34 73.5
Hund25912 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund27633 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund27757 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund27833 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28332 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28440 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28538 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28614 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28956 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund28981 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29028 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29091 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29181 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29249 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29256 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29263 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29290 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29318 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29436 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29853 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30002 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30263 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30448 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30632 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
Hund30993 Selenicereus undatus HOM05D008037 ORTHO05D004271 4.9e-07 57.8 30 83.3
arahy.Tifrunner.gnm1.ann1.27WM5S Arachis hypogaea HOM05D009726 ORTHO05D010588 8.4e-07 57.0 38 68.4
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 8.4e-07 57.0 29 86.2
arahy.Tifrunner.gnm1.ann1.M1FG7L Arachis hypogaea HOM05D008354 ORTHO05D010055 1.1e-06 56.6 25 96.0
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 1.4e-06 56.2 46 60.9
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.4e-06 56.2 30 83.3
arahy.Tifrunner.gnm1.ann1.WK7HZX Arachis hypogaea HOM05D009726 ORTHO05D010588 3.2e-06 55.1 36 69.4
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 3.2e-06 55.1 33 78.8
Nitab4.5_0001727g0120 Nicotiana tabacum HOM05D008016 ORTHO05D010055 4.2e-06 54.7 43 62.8
COL.COLO4_03213 Corchorus olitorius HOM05D001966 ORTHO05D010986 7.1e-06 53.9 49 55.1
Nitab4.5_0004841g0090 Nicotiana tabacum HOM05D008354 ORTHO05D010055 9.3e-06 53.5 26 92.3


User provided reference genes

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