Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.227 Capsicum annuum HOM05D004037 ORTHO05D004744 7.5e-189 663.7 333 100.0
PGSC0003DMG400028592 Solanum tuberosum HOM05D004037 ORTHO05D004744 6.2e-167 590.9 334 89.8
Solyc01g098380.4 Solanum lycopersicum HOM05D004037 ORTHO05D004744 1.1e-163 580.1 334 87.4
Nitab4.5_0000245g0260 Nicotiana tabacum HOM05D004037 ORTHO05D004744 4.3e-160 568.2 335 87.2
Peaxi162Scf00071g00719 Petunia axillaris HOM05D004037 ORTHO05D004744 4.3e-136 488.4 265 92.8
Cc03_g11000 Coffea canephora HOM05D004037 ORTHO05D004744 6.2e-135 484.6 324 75.6
Sopen01g041950 Solanum pennellii HOM05D004037 ORTHO05D004744 5.3e-134 481.5 282 85.5
Migut.M01184 Erythranthe guttata HOM05D004037 ORTHO05D004744 1.6e-130 469.9 300 78.3
Hma1.2p1_0150F.1_g066850 Hydrangea macrophylla HOM05D004037 ORTHO05D004744 4.6e-130 468.4 309 76.1
Migut.M00539 Erythranthe guttata HOM05D004037 ORTHO05D004744 3.9e-129 465.3 300 77.7
Gorai.001G202100 Gossypium raimondii HOM05D004037 ORTHO05D004744 8.7e-129 464.2 295 78.6
Gohir.A07G173900 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.1e-128 463.8 295 78.3
Gohir.D07G181200 Gossypium hirsutum HOM05D004037 ORTHO05D004744 2.5e-128 462.6 295 78.3
Sed0007542 Sechium edule HOM05D004037 ORTHO05D004744 3.3e-128 462.2 327 70.6
Nn3g17600 Nelumbo nucifera HOM05D004037 ORTHO05D004744 4.3e-128 461.8 318 72.0
ClCG09G010780 Citrullus lanatus HOM05D004037 ORTHO05D004744 5.6e-128 461.5 306 75.2
CsaV3_7G021780 Cucumis sativus L. HOM05D004037 ORTHO05D004744 1.3e-127 460.3 306 75.2
Oeu016121.2 Olea europaea HOM05D004037 ORTHO05D004744 1.6e-127 459.9 274 83.9
Atru.chr12.1746 Acer truncatum HOM05D004037 ORTHO05D004744 2.1e-127 459.5 296 78.0
MELO3C013171.2 Cucumis melo HOM05D004037 ORTHO05D004744 2.1e-127 459.5 306 74.8
GSVIVG01038260001 Vitis vinifera HOM05D004037 ORTHO05D004744 3.7e-127 458.8 299 77.6
Manes.05G207900 Manihot esculenta HOM05D004037 ORTHO05D004744 4.8e-127 458.4 291 76.3
CiPaw.01G202600 Carya illinoinensis HOM05D004037 ORTHO05D004744 6.2e-127 458.0 303 74.9
Sed0020358 Sechium edule HOM05D004037 ORTHO05D004744 6.2e-127 458.0 305 75.4
Actinidia39245 Actinidia chinensis HOM05D004037 ORTHO05D004744 8.2e-127 457.6 340 68.5
Lju470A2T32 Lonicera japonica HOM05D004037 ORTHO05D004744 1.8e-126 456.4 283 80.2
MBI18_g24142_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 1.8e-126 456.4 313 72.5
TAR636G3090 Trochodendron aralioides HOM05D004037 ORTHO05D004744 3.1e-126 455.7 296 76.7
Aqoxy2G03110 Aquilegia oxysepala HOM05D004037 ORTHO05D004744 4.0e-126 455.3 289 77.5
COL.COLO4_19183 Corchorus olitorius HOM05D004037 ORTHO05D004744 4.0e-126 455.3 276 80.8
CDE02G2837 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 5.3e-126 454.9 298 74.8
Gorai.007G347100 Gossypium raimondii HOM05D004037 ORTHO05D004744 5.3e-126 454.9 276 80.4
Hund02101 Selenicereus undatus HOM05D004037 ORTHO05D004744 6.9e-126 454.5 338 69.5
Duzib093G0613 Durio zibethinus HOM05D004037 ORTHO05D004744 9.0e-126 454.1 276 80.4
Sc06g0007930 Simmondsia chinensis HOM05D004037 ORTHO05D004744 9.0e-126 454.1 302 74.5
TWI63G1426 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 9.0e-126 454.1 276 81.2
Ah.06g182910 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.5e-125 453.4 340 69.1
Gohir.A11G301700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.5e-125 453.4 276 80.4
PGR042G3458 Punica granatum HOM05D004037 ORTHO05D004744 2.0e-125 453.0 302 76.5
QL10p064641 Quercus lobata HOM05D004037 ORTHO05D004744 2.0e-125 453.0 275 80.0
Actinidia14627 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.4e-125 452.2 339 69.0
QL10p065764 Quercus lobata HOM05D004037 ORTHO05D004744 4.5e-125 451.8 275 79.6
Thecc.05G172500 Theobroma cacao HOM05D004037 ORTHO05D004744 4.5e-125 451.8 276 80.4
C03p29380 Brassica napus HOM05D004037 ORTHO05D004744 7.6e-125 451.1 276 79.3
BolC3t15285H Brassica oleracea HOM05D004037 ORTHO05D004744 7.6e-125 451.1 276 79.3
Hund23277 Selenicereus undatus HOM05D004037 ORTHO05D004744 7.6e-125 451.1 328 70.4
TWI34G0723 Tripterygium wilfordii HOM05D004037 ORTHO05D004744 1.3e-124 450.3 291 77.0
Ah.04g165670 Amaranthus hybridus HOM05D004037 ORTHO05D004744 1.7e-124 449.9 340 67.4
MSTRG.7308 Avicennia marina HOM05D004037 ORTHO05D004744 1.7e-124 449.9 304 76.6
A03p24640 Brassica napus HOM05D004037 ORTHO05D004744 1.7e-124 449.9 276 79.3
BraA03t11670Z Brassica rapa HOM05D004037 ORTHO05D004744 1.7e-124 449.9 276 79.3
EL10Ac2g02395 Beta vulgaris HOM05D004037 ORTHO05D004744 2.2e-124 449.5 338 69.8
FvH4_2g00280 Fragaria vesca HOM05D004037 ORTHO05D004744 2.2e-124 449.5 329 69.9
CANSAT01G0494 Cannabis sativa HOM05D004037 ORTHO05D004744 2.9e-124 449.1 287 77.7
BcaC01g05190 Brassica carinata HOM05D004037 ORTHO05D004744 4.9e-124 448.4 276 78.6
Thecc.01G117800 Theobroma cacao HOM05D004037 ORTHO05D004744 4.9e-124 448.4 276 79.7
Gohir.D11G316700 Gossypium hirsutum HOM05D004037 ORTHO05D004744 6.5e-124 448.0 271 80.8
THA.LOC104804380 Tarenaya hassleriana HOM05D004037 ORTHO05D004744 6.5e-124 448.0 276 79.0
RcHm_v2.0_Chr2g0084421 Rosa chinensis HOM05D004037 ORTHO05D004744 8.4e-124 447.6 302 74.2
PSO541G3258 Papaver somniferum HOM05D004037 ORTHO05D004744 1.1e-123 447.2 289 76.1
Sp4g26120 Schrenkiella parvula HOM05D004037 ORTHO05D004744 1.1e-123 447.2 276 78.6
AUR62016240 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.4e-123 446.8 340 68.5
Glyma.16G028900 Glycine max HOM05D004037 ORTHO05D004744 1.4e-123 446.8 300 74.0
Carub.0004s2659 Capsella rubella HOM05D004037 ORTHO05D004744 1.9e-123 446.4 276 78.6
CARHR139200 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.9e-123 446.4 276 79.0
FAN19G0379 Fragaria x ananassa HOM05D004037 ORTHO05D004744 1.9e-123 446.4 302 73.8
AT2G44040 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 2.5e-123 446.0 276 78.6
Aa31LG1G25710 Aethionema arabicum HOM05D004037 ORTHO05D004744 3.2e-123 445.7 316 70.6
AL5G42050 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 3.2e-123 445.7 305 73.1
BraA04t18775Z Brassica rapa HOM05D004037 ORTHO05D004744 4.2e-123 445.3 274 78.8
Thhalv10001534m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 4.2e-123 445.3 276 78.3
AT3G59890 Arabidopsis thaliana HOM05D004037 ORTHO05D004744 5.5e-123 444.9 276 78.3
Ciclev10020914m.g Citrus clementina HOM05D004037 ORTHO05D004744 5.5e-123 444.9 322 71.7
PSO675G6334 Papaver somniferum HOM05D004037 ORTHO05D004744 5.5e-123 444.9 297 73.7
Aa31LG10G14130 Aethionema arabicum HOM05D004037 ORTHO05D004744 7.1e-123 444.5 276 78.3
AL4G42910 Arabidopsis lyrata HOM05D004037 ORTHO05D004744 7.1e-123 444.5 276 78.3
BolC4t28586H Brassica oleracea HOM05D004037 ORTHO05D004744 7.1e-123 444.5 274 78.5
Carub.0005s2663 Capsella rubella HOM05D004037 ORTHO05D004744 7.1e-123 444.5 274 78.8
MD15G1142500 Malus domestica HOM05D004037 ORTHO05D004744 7.1e-123 444.5 292 74.3
A04p33160 Brassica napus HOM05D004037 ORTHO05D004744 1.2e-122 443.7 276 78.3
CDE05G0441 Ceratophyllum demersum HOM05D004037 ORTHO05D004744 1.2e-122 443.7 272 80.1
AUR62032781 Chenopodium quinoa HOM05D004037 ORTHO05D004744 1.2e-122 443.7 338 68.6
C04p70860 Brassica napus HOM05D004037 ORTHO05D004744 3.5e-122 442.2 274 78.1
Medtr8g028145 Medicago truncatula HOM05D004037 ORTHO05D004744 3.5e-122 442.2 341 67.2
Prupe.6G152500 Prunus persica HOM05D004037 ORTHO05D004744 3.5e-122 442.2 290 74.8
FAN24G1991 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.6e-122 441.8 272 80.5
HanXRQChr02g0032821 Helianthus annuus HOM05D004037 ORTHO05D004744 4.6e-122 441.8 276 78.3
Prupe.7G270700 Prunus persica HOM05D004037 ORTHO05D004744 6.0e-122 441.4 282 77.0
Duzib128G0968 Durio zibethinus HOM05D004037 ORTHO05D004744 7.9e-122 441.0 295 74.9
Lalb_Chr10g0100171 Lupinus albus HOM05D004037 ORTHO05D004744 7.9e-122 441.0 300 74.3
Ca_23565_v3 Cicer arietinum L. HOM05D004037 ORTHO05D004744 1.0e-121 440.7 299 73.9
ECA246G0926 Erigeron canadensis HOM05D004037 ORTHO05D004744 1.0e-121 440.7 339 66.7
Gohir.D11G317300 Gossypium hirsutum HOM05D004037 ORTHO05D004744 1.0e-121 440.7 315 70.5
CARHR170220 Cardamine hirsuta HOM05D004037 ORTHO05D004744 1.3e-121 440.3 276 77.2
DCAR_002599 Daucus carota HOM05D004037 ORTHO05D004744 1.3e-121 440.3 340 66.8
Thhalv10006083m.g Eutrema salsugineum HOM05D004037 ORTHO05D004744 1.3e-121 440.3 276 77.2
VMungo1383G1316 Vigna mungo HOM05D004037 ORTHO05D004744 1.3e-121 440.3 281 78.3
Glyma.07G060300 Glycine max HOM05D004037 ORTHO05D004744 1.8e-121 439.9 300 73.0
Psat4g089800 Pisum sativum HOM05D004037 ORTHO05D004744 2.3e-121 439.5 299 74.2
TPR.G5068 Trifolium pratense HOM05D004037 ORTHO05D004744 2.3e-121 439.5 276 78.3
vmacro05805 Vaccinium macrocarpon HOM05D004037 ORTHO05D004744 2.3e-121 439.5 272 79.8
BcaB01g03335 Brassica carinata HOM05D004037 ORTHO05D004744 3.0e-121 439.1 276 77.2
Lsat_1_v5_gn_3_17660 Lactuca sativa HOM05D004037 ORTHO05D004744 3.9e-121 438.7 276 76.8
BcaB06g29352 Brassica carinata HOM05D004037 ORTHO05D004744 1.9e-120 436.4 271 78.6
Phvul.001G003100 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 1.9e-120 436.4 276 77.5
Lj3g0014190 Lotus japonicus HOM05D004037 ORTHO05D004744 2.5e-120 436.0 301 72.4
Phvul.010G108900 Phaseolus vulgaris HOM05D004037 ORTHO05D004744 3.3e-120 435.6 300 74.0
arahy.Tifrunner.gnm1.ann1.X3ZCQR Arachis hypogaea HOM05D004037 ORTHO05D004744 9.7e-120 434.1 322 69.3
SalBow8G4021 Salvia bowleyana HOM05D004037 ORTHO05D004744 1.6e-119 433.3 283 77.7
EL10Ac6g13735 Beta vulgaris HOM05D004037 ORTHO05D004744 2.2e-119 433.0 274 77.4
RcHm_v2.0_Chr2g0126841 Rosa chinensis HOM05D004037 ORTHO05D004744 2.8e-119 432.6 276 76.4
arahy.Tifrunner.gnm1.ann1.FPGW6Q Arachis hypogaea HOM05D004037 ORTHO05D004744 3.7e-119 432.2 322 68.9
HPP92_022643 Vanilla planifolia HOM05D004037 ORTHO05D004744 3.7e-119 432.2 323 66.9
CSS0028639 Camellia sinensis var. sinensis HOM05D004037 ORTHO05D004744 1.1e-118 430.6 292 72.9
ATR0743G110 Amborella trichopoda HOM05D004037 ORTHO05D004744 1.2e-117 427.2 275 75.3
PSO339G4618 Papaver somniferum HOM05D004037 ORTHO05D004744 8.5e-116 421.0 316 67.1
Potri.017G001900 Populus trichocarpa HOM05D004037 ORTHO05D004744 1.9e-115 419.9 276 75.4
Haze_11114 Corylus avellana HOM05D004037 ORTHO05D004744 2.5e-115 419.5 317 67.8
Lj6C283G4 Lonicera japonica HOM05D004037 ORTHO05D004744 2.7e-114 416.0 295 71.9
AUR62032340 Chenopodium quinoa HOM05D004037 ORTHO05D004744 3.0e-113 412.5 317 67.8
Cpa.g.sc182.24 Carica papaya HOM05D004037 ORTHO05D004744 3.9e-113 412.1 284 74.6
BcaC02g07140 Brassica carinata HOM05D004037 ORTHO05D004744 6.7e-113 411.4 276 74.6
PSO384G4791 Papaver somniferum HOM05D004037 ORTHO05D004744 8.8e-113 411.0 297 69.0
AUR62028616 Chenopodium quinoa HOM05D004037 ORTHO05D004744 5.7e-112 408.3 329 65.3
Oeu050828.1 Olea europaea HOM05D004037 ORTHO05D004744 1.3e-111 407.1 306 70.3
SGA_v2.0_scaffold22G09788 Striga asiatica HOM05D004037 ORTHO05D004744 2.8e-111 406.0 303 71.3
unitig_37.g12156 Utricularia gibba HOM05D004037 ORTHO05D004744 1.1e-110 404.1 283 70.7
Potri.007G145900 Populus trichocarpa HOM05D004037 ORTHO05D004744 3.1e-110 402.5 290 67.9
Nitab4.5_0001165g0010 Nicotiana tabacum HOM05D004037 ORTHO05D004744 5.3e-110 401.7 246 84.1
Os02g0436400 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 5.3e-110 401.7 290 69.7
Zm00001eb176170 Zea mays HOM05D004037 ORTHO05D004744 5.3e-110 401.7 275 72.0
HanXRQChr05g0133541 Helianthus annuus HOM05D004037 ORTHO05D004744 2.0e-109 399.8 263 74.5
Os03g0245100 Oryza sativa ssp. japonica HOM05D004037 ORTHO05D004744 3.2e-107 392.5 275 69.8
BcaB06g29511 Brassica carinata HOM05D004037 ORTHO05D004744 8.8e-105 384.4 270 71.5
Sabra17G0005900 Salix brachista HOM05D004037 ORTHO05D004744 1.1e-104 384.0 328 61.3
Cfa008527 Carpinus fangiana HOM05D004037 ORTHO05D004744 3.3e-104 382.5 317 62.5
Nn048s41912 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.4e-104 381.3 282 68.1
SEGI_29918 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 1.7e-103 380.2 275 65.5
SMO347G0499 Selaginella moellendorffii HOM05D004037 ORTHO05D004744 3.0e-97 359.4 275 63.6
Pp3c15_7380 Physcomitrium patens HOM05D004037 ORTHO05D004744 1.7e-95 353.6 276 61.6
Peaxi162Scf00434g00730 Petunia axillaris HOM05D004037 ORTHO05D004744 6.3e-95 351.7 186 94.6
CBR_g41668 Chara braunii HOM05D004037 ORTHO05D004744 4.5e-93 345.5 276 60.1
Dinv24475 Davidia involucrata HOM05D004037 ORTHO05D004744 1.6e-85 320.5 210 77.6
Mapoly0033s0134 Marchantia polymorpha HOM05D004037 ORTHO05D004744 1.8e-81 307.0 286 57.0
Cre14.g627850 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 7.5e-80 301.6 295 51.5
MCO16G413 Micromonas commoda HOM05D004037 ORTHO05D004744 1.8e-78 297.0 288 56.2
PRCOL_00006631 Prasinoderma coloniale HOM05D004037 ORTHO05D004744 3.8e-76 289.3 274 50.4
FAN20G0369 Fragaria x ananassa HOM05D004037 ORTHO05D004744 4.2e-75 285.8 230 63.9
Peaxi162Scf00434g00733 Petunia axillaris HOM05D004037 ORTHO05D004744 6.8e-73 278.5 218 70.6
Peaxi162Scf00434g00740 Petunia axillaris HOM05D004037 ORTHO05D004744 6.3e-71 271.9 174 83.9
Gohir.D09G124433 Gossypium hirsutum HOM05D004037 ORTHO05D004744 4.0e-65 252.7 239 59.8
Gorai.006G143300 Gossypium raimondii HOM05D004037 ORTHO05D004744 1.8e-57 227.3 224 58.0
Actinidia11426 Actinidia chinensis HOM05D004037 ORTHO05D004744 3.7e-55 219.5 159 69.8
Nn048s41913 Nelumbo nucifera HOM05D004037 ORTHO05D004744 2.4e-54 216.9 175 64.6
BcaB01g03344 Brassica carinata HOM05D004037 ORTHO05D004744 6.2e-50 202.2 257 48.2
Zm00001eb398800 Zea mays HOM05D004037 ORTHO05D004744 6.8e-49 198.7 156 62.2
Lsat_1_v5_gn_9_123180 Lactuca sativa HOM05D002510 ORTHO05D007210 2.9e-47 193.4 175 58.9
AagrBONN_evm.TU.Sc2ySwM_368.1842 Anthoceros agrestis HOM05D004037 ORTHO05D004744 1.8e-41 174.1 189 51.9
AagrBONN_evm.TU.Sc2ySwM_368.1728 Anthoceros agrestis HOM05D004037 ORTHO05D004744 7.8e-37 158.7 138 59.4
FvH4_2g00640 Fragaria vesca HOM05D004037 ORTHO05D004744 3.0e-36 156.8 90 84.4
PSO451G0001 Papaver somniferum HOM05D004037 ORTHO05D004744 3.8e-31 139.8 77 87.0
Cre16.g656300 Chlamydomonas reinhardtii HOM05D004037 ORTHO05D004744 1.2e-29 134.8 280 31.4
Peaxi162Scf00609g00310 Petunia axillaris HOM05D004037 ORTHO05D019316 3.3e-27 126.7 68 92.6
MBI01_g38182_MAGBIO Magnolia biondii HOM05D004037 ORTHO05D004744 9.6e-27 125.2 75 84.0
RhsimUnG0159300 Rhododendron simsii HOM05D004037 ORTHO05D004744 9.6e-27 125.2 185 43.2
AagrBONN_evm.TU.Sc2ySwM_152.2 Anthoceros agrestis HOM05D004037 ORTHO05D004744 4.9e-23 112.8 164 43.3
MD02G1000400 Malus domestica HOM05D004037 ORTHO05D004744 3.5e-21 106.7 89 58.4
ATR0716G071 Amborella trichopoda HOM05D004037 ORTHO05D004744 2.3e-20 104.0 66 83.3
CAN.G1019.1 Capsicum annuum HOM05D004037 ORTHO05D004744 8.1e-18 95.5 59 81.4
AagrBONN_evm.TU.Sc2ySwM_344.5552 Anthoceros agrestis HOM05D004037 ORTHO05D004744 6.9e-17 92.4 84 54.8
SEGI_36179 Sequoiadendron giganteum HOM05D004037 ORTHO05D004744 2.3e-12 77.4 179 30.7
AUR62041665 Chenopodium quinoa HOM05D006904 ORTHO05D008439 5.3e-09 66.2 81 45.7
Nn1g07592 Nelumbo nucifera HOM05D004037 ORTHO05D004744 7.2e-06 55.8 39 79.5


User provided reference genes

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