Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.202 Capsicum annuum HOM05D004384 ORTHO05D005797 0.0e+00 2337.4 1198 100.0
Solyc01g098170.3 Solanum lycopersicum HOM05D004384 ORTHO05D005797 0.0e+00 2209.9 1200 94.2
Nitab4.5_0000245g0070 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 2138.6 1198 91.1
Peaxi162Scf00225g00421 Petunia axillaris HOM05D004384 ORTHO05D005797 0.0e+00 2022.3 1205 86.2
Nitab4.5_0010351g0010 Nicotiana tabacum HOM05D004384 ORTHO05D005797 0.0e+00 1991.5 1198 86.3
Dinv04274 Davidia involucrata HOM05D004384 ORTHO05D005797 0.0e+00 1807.3 1206 76.5
GSVIVG01021908001 Vitis vinifera HOM05D004384 ORTHO05D005797 0.0e+00 1748.4 1207 74.3
Nn3g21301 Nelumbo nucifera HOM05D004384 ORTHO05D005797 0.0e+00 1738.8 1208 73.4
Actinidia05750 Actinidia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1738.4 1207 73.6
Prupe.6G336100 Prunus persica HOM05D004384 ORTHO05D005797 0.0e+00 1736.1 1208 73.1
Cc02_g32190 Coffea canephora HOM05D004384 ORTHO05D005797 0.0e+00 1735.7 1201 72.9
Gohir.A13G171600 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1726.1 1203 73.3
Potri.013G032100 Populus trichocarpa HOM05D004384 ORTHO05D005797 0.0e+00 1721.8 1200 73.0
Thecc.05G292400 Theobroma cacao HOM05D004384 ORTHO05D005797 0.0e+00 1719.9 1201 73.2
Rhsim10G0110700 Rhododendron simsii HOM05D004384 ORTHO05D005797 0.0e+00 1718.7 1208 73.6
Duzib177G1205 Durio zibethinus HOM05D004384 ORTHO05D005797 0.0e+00 1718.0 1204 73.2
Manes.09G159100 Manihot esculenta HOM05D004384 ORTHO05D005797 0.0e+00 1718.0 1210 72.6
CiPaw.07G010400 Carya illinoinensis HOM05D004384 ORTHO05D005797 0.0e+00 1714.5 1202 73.0
CSS0010917 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 0.0e+00 1709.9 1182 74.7
QL03p001130 Quercus lobata HOM05D004384 ORTHO05D005797 0.0e+00 1708.7 1202 73.2
MD12G1232900 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1704.9 1207 72.2
RcHm_v2.0_Chr3g0452661 Rosa chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1703.7 1198 72.6
MD04G1216400 Malus domestica HOM05D004384 ORTHO05D005797 0.0e+00 1701.4 1203 72.3
Cfa006495 Carpinus fangiana HOM05D004384 ORTHO05D005797 0.0e+00 1696.4 1202 72.9
CANSAT54G2523 Cannabis sativa HOM05D004384 ORTHO05D005797 0.0e+00 1696.0 1196 72.7
Sc06g0003540 Simmondsia chinensis HOM05D004384 ORTHO05D005797 0.0e+00 1696.0 1204 71.1
TWI56G1253 Tripterygium wilfordii HOM05D004384 ORTHO05D005797 0.0e+00 1690.2 1202 71.6
TAR362G1140 Trochodendron aralioides HOM05D004384 ORTHO05D005797 0.0e+00 1685.6 1173 73.4
FvH4_6g04110 Fragaria vesca HOM05D004384 ORTHO05D005797 0.0e+00 1683.3 1197 71.9
FAN14G1587 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1682.2 1197 71.9
FAN05G3638 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1681.4 1197 71.5
Cpa.g.sc117.32 Carica papaya HOM05D004384 ORTHO05D005797 0.0e+00 1680.2 1196 71.2
FAN09G2428 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1676.8 1197 71.5
Gorai.013G122800 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1675.2 1202 70.9
FAN09G2922 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1674.1 1198 71.7
FAN02G3203 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1670.6 1197 71.4
Hund07007 Selenicereus undatus HOM05D004384 ORTHO05D005797 0.0e+00 1667.9 1203 70.2
FAN05G1088 Fragaria x ananassa HOM05D004384 ORTHO05D005797 0.0e+00 1666.0 1207 70.6
PGR004G0471 Punica granatum HOM05D004384 ORTHO05D005797 0.0e+00 1662.9 1206 70.2
Eucgr.H04418 Eucalyptus grandis HOM05D004384 ORTHO05D005797 0.0e+00 1649.4 1209 70.6
EL10Ac4g09231 Beta vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1649.0 1203 69.6
Gorai.013G202700 Gossypium raimondii HOM05D004384 ORTHO05D005797 0.0e+00 1645.9 1203 70.9
Gohir.D13G109200 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1644.0 1177 71.0
Ciclev10000072m.g Citrus clementina HOM05D004384 ORTHO05D005797 0.0e+00 1637.1 1199 70.9
Lalb_Chr04g0261021 Lupinus albus HOM05D004384 ORTHO05D005797 0.0e+00 1635.9 1209 69.7
Glyma.19G240700 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1632.5 1202 69.3
AUR62005028 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1630.9 1205 68.1
SalBow8G4829 Salvia bowleyana HOM05D004384 ORTHO05D005797 0.0e+00 1622.4 1202 68.2
MSTRG.20437 Avicennia marina HOM05D004384 ORTHO05D005797 0.0e+00 1620.1 1202 67.9
Glyma.03G243400 Glycine max HOM05D004384 ORTHO05D005797 0.0e+00 1619.4 1217 68.6
Lj1g0011638 Lotus japonicus HOM05D004384 ORTHO05D005797 0.0e+00 1617.4 1200 69.6
SGA_v2.0_scaffold36G14404 Striga asiatica HOM05D004384 ORTHO05D005797 0.0e+00 1614.4 1217 67.6
Sabra13G0030800 Salix brachista HOM05D004384 ORTHO05D005797 0.0e+00 1610.9 1159 70.1
DCAR_022275 Daucus carota HOM05D004384 ORTHO05D005797 0.0e+00 1599.3 1205 67.2
Migut.B01068 Erythranthe guttata HOM05D004384 ORTHO05D005797 0.0e+00 1598.6 1205 67.3
VMungo0540G2235 Vigna mungo HOM05D004384 ORTHO05D005797 0.0e+00 1596.3 1199 67.2
Ah.06g192860 Amaranthus hybridus HOM05D004384 ORTHO05D005797 0.0e+00 1595.1 1202 67.5
Aqoxy2G03095 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1591.2 1209 67.2
Gohir.D13G177400 Gossypium hirsutum HOM05D004384 ORTHO05D005797 0.0e+00 1590.5 1203 69.0
THA.LOC104821698 Tarenaya hassleriana HOM05D004384 ORTHO05D005797 0.0e+00 1587.4 1197 67.4
Lsat_1_v5_gn_2_64920 Lactuca sativa HOM05D004384 ORTHO05D005797 0.0e+00 1582.4 1200 67.0
Psat3g008440 Pisum sativum HOM05D004384 ORTHO05D005797 0.0e+00 1582.4 1200 67.7
Thhalv10003536m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1580.5 1204 66.9
Aa31LG11G8890 Aethionema arabicum HOM05D004384 ORTHO05D005797 0.0e+00 1578.5 1204 66.8
ECA238G0831 Erigeron canadensis HOM05D004384 ORTHO05D005797 0.0e+00 1577.4 1195 66.8
PSO170G1333 Papaver somniferum HOM05D004384 ORTHO05D005797 0.0e+00 1575.5 1199 66.3
TPR.G6955 Trifolium pratense HOM05D004384 ORTHO05D005797 0.0e+00 1566.6 1197 67.3
Ca_09392_v3 Cicer arietinum L. HOM05D004384 ORTHO05D005797 0.0e+00 1560.8 1165 68.7
Medtr7g114260 Medicago truncatula HOM05D004384 ORTHO05D005797 0.0e+00 1557.0 1205 66.6
HanXRQChr14g0446631 Helianthus annuus HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1196 66.0
Sp2g20420 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1552.7 1201 66.2
ClCG02G016280 Citrullus lanatus HOM05D004384 ORTHO05D005797 0.0e+00 1548.9 1208 65.8
A06p37710 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1548.1 1204 65.6
Oeu053262.1 Olea europaea HOM05D004384 ORTHO05D005797 0.0e+00 1548.1 1256 64.4
BolC7t44588H Brassica oleracea HOM05D004384 ORTHO05D005797 0.0e+00 1546.9 1200 66.0
CsaV3_2G004460 Cucumis sativus L. HOM05D004384 ORTHO05D005797 0.0e+00 1546.9 1205 65.7
BraA06t26690Z Brassica rapa HOM05D004384 ORTHO05D005797 0.0e+00 1545.8 1204 65.5
C07p40520 Brassica napus HOM05D004384 ORTHO05D005797 0.0e+00 1544.6 1200 66.0
CARHR185780 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1539.6 1199 65.7
Carub.0006s2534 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1525.8 1199 65.2
MELO3C004347.2 Cucumis melo HOM05D004384 ORTHO05D005797 0.0e+00 1516.9 1205 65.2
AL3G15430 Arabidopsis lyrata HOM05D004384 ORTHO05D005797 0.0e+00 1511.5 1183 65.3
Sed0012875 Sechium edule HOM05D004384 ORTHO05D005797 0.0e+00 1510.4 1181 65.2
arahy.Tifrunner.gnm1.ann1.KAQB8D Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1501.5 1114 68.5
Sopen01g041740 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1499.2 802 94.9
COL.COLO4_13624 Corchorus olitorius HOM05D004384 ORTHO05D005797 0.0e+00 1498.4 1204 66.1
Thhalv10022131m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 0.0e+00 1488.8 1180 65.0
AT3G05040 Arabidopsis thaliana HOM05D004384 ORTHO05D005797 0.0e+00 1487.6 1199 63.6
Carub.0003s0429 Capsella rubella HOM05D004384 ORTHO05D005797 0.0e+00 1476.1 1188 64.1
arahy.Tifrunner.gnm1.ann1.RD3H93 Arachis hypogaea HOM05D004384 ORTHO05D005797 0.0e+00 1474.5 1201 63.9
AUR62000939 Chenopodium quinoa HOM05D004384 ORTHO05D005797 0.0e+00 1463.4 1135 65.8
Lj7A481G46 Lonicera japonica HOM05D004384 ORTHO05D005797 0.0e+00 1453.3 981 75.9
vmacro05244 Vaccinium macrocarpon HOM05D004384 ORTHO05D005797 0.0e+00 1431.8 1293 61.3
CDE01G0361 Ceratophyllum demersum HOM05D004384 ORTHO05D005797 0.0e+00 1419.1 1211 60.8
unitig_0.g2222 Utricularia gibba HOM05D004384 ORTHO05D005797 0.0e+00 1378.6 1216 59.4
Phvul.006G097400 Phaseolus vulgaris HOM05D004384 ORTHO05D005797 0.0e+00 1370.5 1014 68.3
Zm00001eb341370 Zea mays HOM05D004384 ORTHO05D005797 0.0e+00 1366.7 1196 59.5
Os01g0363900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 0.0e+00 1347.4 1200 57.8
Sp3g03870 Schrenkiella parvula HOM05D004384 ORTHO05D005797 0.0e+00 1346.6 1137 61.4
ATR0618G249 Amborella trichopoda HOM05D004384 ORTHO05D005797 0.0e+00 1340.5 1181 59.9
BcaNung04267 Brassica carinata HOM05D004384 ORTHO05D005797 0.0e+00 1336.6 1203 59.9
Aqoxy179s001 Aquilegia oxysepala HOM05D004384 ORTHO05D005797 0.0e+00 1239.9 1052 62.9
Sopen00g006580 Solanum pennellii HOM05D004384 ORTHO05D005797 0.0e+00 1177.5 629 94.6
CARHR079360 Cardamine hirsuta HOM05D004384 ORTHO05D005797 0.0e+00 1128.6 887 64.0
Atru.chr2.639 Acer truncatum HOM05D004384 ORTHO05D005797 0.0e+00 1128.2 960 62.4
Haze_04294 Corylus avellana HOM05D004384 ORTHO05D005797 0.0e+00 1087.0 836 68.2
Medtr1g063040 Medicago truncatula HOM05D004384 ORTHO05D005797 6.9e-301 1037.7 1148 52.6
Pp3c7_3740 Physcomitrium patens HOM05D004384 ORTHO05D005797 6.1e-273 944.9 1247 43.0
Pp3c11_26800 Physcomitrium patens HOM05D004384 ORTHO05D005797 4.3e-271 938.7 1240 43.2
Mapoly0015s0189 Marchantia polymorpha HOM05D004384 ORTHO05D005797 2.2e-267 926.4 1254 44.0
BolC1t05723H Brassica oleracea HOM05D004384 ORTHO05D005797 9.7e-247 857.8 1183 43.4
SMO145G0253 Selaginella moellendorffii HOM05D004384 ORTHO05D005797 3.6e-241 839.3 1209 40.9
BNapus_Darmor_BZH_scaffold_78p01040 Brassica napus HOM05D004384 ORTHO05D005797 5.4e-237 825.5 1152 42.8
BcaB04g21343 Brassica carinata HOM05D004384 ORTHO05D005797 4.5e-236 822.4 1173 42.6
BraA01t04501Z Brassica rapa HOM05D004384 ORTHO05D005797 3.3e-234 816.2 1152 42.7
SEGI_22518 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.4e-222 775.4 802 52.0
BcaC05g29989 Brassica carinata HOM05D004384 ORTHO05D005797 2.7e-220 770.0 1073 44.5
AagrBONN_evm.TU.Sc2ySwM_340.422 Anthoceros agrestis HOM05D004384 ORTHO05D005797 1.2e-212 744.6 1218 37.0
Actinidia30910 Actinidia chinensis HOM05D004384 ORTHO05D005797 5.4e-205 719.2 600 65.2
HPP92_011287 Vanilla planifolia HOM05D004384 ORTHO05D005797 6.2e-193 679.1 629 57.1
HPP92_011308 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.0e-192 675.2 568 59.9
HPP92_011286 Vanilla planifolia HOM05D004384 ORTHO05D005797 1.8e-176 624.4 537 58.5
Gohir.A13G106433 Gossypium hirsutum HOM05D004384 ORTHO05D005797 1.3e-163 581.6 418 72.5
PGSC0003DMG400022491 Solanum tuberosum HOM05D004384 ORTHO05D005797 3.9e-163 580.1 321 93.8
Haze_04301 Corylus avellana HOM05D004384 ORTHO05D005797 5.1e-163 579.7 469 67.2
HPP92_011309 Vanilla planifolia HOM05D004384 ORTHO05D005797 7.7e-151 539.3 485 58.4
Sopen01g041750 Solanum pennellii HOM05D004384 ORTHO05D005797 1.9e-149 534.6 297 93.3
Sopen00g006590 Solanum pennellii HOM05D004384 ORTHO05D005797 1.4e-104 385.6 210 93.3
MCO07G327 Micromonas commoda HOM05D004384 ORTHO05D005797 9.6e-85 319.7 1387 24.2
Glyma.02G183700 Glycine max HOM05D004384 ORTHO05D005797 1.1e-77 296.2 210 70.0
SEGI_23591 Sequoiadendron giganteum HOM05D004384 ORTHO05D005797 6.4e-73 280.4 271 52.4
Lj7C481T10 Lonicera japonica HOM05D004384 ORTHO05D005797 8.1e-68 263.5 187 73.3
arahy.Tifrunner.gnm1.ann1.2MX35J Arachis hypogaea HOM05D000319 ORTHO05D002646 3.1e-59 235.0 213 58.7
Os11g0518900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 8.4e-57 226.9 469 32.6
Os11g0513900 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D005797 1.0e-49 203.4 508 30.1
CSS0044605 Camellia sinensis var. sinensis HOM05D004384 ORTHO05D005797 2.7e-39 168.7 109 78.0
Cre10.g420400 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 6.7e-30 137.5 854 19.9
Ciclev10003957m.g Citrus clementina HOM05D004384 ORTHO05D005797 3.6e-23 115.2 96 65.6
MBI18_g14725_MAGBIO Magnolia biondii HOM05D004384 ORTHO05D005797 7.7e-18 97.4 73 64.4
Lsat_1_v5_gn_5_147500 Lactuca sativa HOM05D001610 ORTHO05D005797 8.0e-15 87.4 73 61.6
CAN.G124.14 Capsicum annuum HOM05D004384 ORTHO05D022156 2.3e-14 85.9 50 90.0
CAN.G37.9 Capsicum annuum HOM05D001673 ORTHO05D013418 2.3e-14 85.9 50 90.0
Os11g0517800 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D299849 4.0e-14 85.1 349 26.1
BcaC03g17773 Brassica carinata HOM05D004384 ORTHO05D005797 6.8e-14 84.3 82 54.9
C02p57890 Brassica napus HOM05D004384 ORTHO05D005797 1.5e-13 83.2 63 66.7
BcaNung06429 Brassica carinata HOM05D004384 ORTHO05D005797 2.2e-12 79.3 80 50.0
Os11g0519500 Oryza sativa ssp. japonica HOM05D004384 ORTHO05D300109 1.1e-11 77.0 352 24.1
BolC2t11857H Brassica oleracea HOM05D004384 ORTHO05D005797 5.4e-11 74.7 63 63.5
Thhalv10011164m.g Eutrema salsugineum HOM05D004384 ORTHO05D005797 9.1e-11 73.9 77 45.5
CAN.G473.63 Capsicum annuum HOM05D004384 ORTHO05D115006 1.6e-10 73.2 36 97.2
FvH4_6g04501 Fragaria vesca HOM05D004384 ORTHO05D005797 2.7e-10 72.4 88 50.0
BraA01t04627Z Brassica rapa HOM05D004384 ORTHO05D005797 7.7e-10 70.9 69 50.7
BraA05t22999Z Brassica rapa HOM05D004384 ORTHO05D005797 2.2e-09 69.3 70 55.7
A05p42530 Brassica napus HOM05D004384 ORTHO05D005797 6.5e-09 67.8 70 54.3
Cre10.g420250 Chlamydomonas reinhardtii HOM05D004384 ORTHO05D005797 4.2e-08 65.1 182 25.8
Medtr7g062520 Medicago truncatula HOM05D004384 ORTHO05D005797 7.2e-08 64.3 59 59.3
HPP92_011310 Vanilla planifolia HOM05D004384 ORTHO05D005797 9.4e-08 63.9 63 52.4
CAN.G27.13 Capsicum annuum HOM05D001016 ORTHO05D016153 1.0e-06 60.5 75 45.3
CAN.G71.10 Capsicum annuum HOM05D001871 ORTHO05D002022 1.0e-06 60.5 35 85.7
Lsat_1_v5_gn_5_15721 Lactuca sativa HOM05D001610 ORTHO05D001585 1.8e-06 59.7 122 32.8
Sabra13G0031800 Salix brachista HOM05D004384 ORTHO05D037489 6.8e-06 57.8 108 36.1


User provided reference genes

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