Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.178 Capsicum annuum HOM05D004245 ORTHO05D004783 9.3e-78 293.5 152 100.0
Sopen01g041550 Solanum pennellii HOM05D004245 ORTHO05D004783 2.4e-73 278.9 152 95.4
PGSC0003DMG400022502 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.4e-73 278.9 152 95.4
AUR62027309 Chenopodium quinoa HOM05D004245 ORTHO05D004783 3.1e-65 251.9 149 87.9
Cc10_g03000 Coffea canephora HOM05D004245 ORTHO05D004783 9.0e-65 250.4 147 86.4
RcHm_v2.0_Chr6g0300871 Rosa chinensis HOM05D004245 ORTHO05D004783 2.0e-64 249.2 145 86.9
Medtr3g063110 Medicago truncatula HOM05D004245 ORTHO05D004783 2.6e-64 248.8 149 84.6
Psat5g146640 Pisum sativum HOM05D004245 ORTHO05D004783 2.6e-64 248.8 149 83.9
Oeu049959.1 Olea europaea HOM05D004245 ORTHO05D004783 7.6e-64 247.3 141 87.9
Oeu049960.1 Olea europaea HOM05D004245 ORTHO05D004783 7.6e-64 247.3 141 87.9
Solyc01g097970.4 Solanum lycopersicum HOM05D004245 ORTHO05D004783 1.3e-63 246.5 137 93.4
Thhalv10011147m.g Eutrema salsugineum HOM05D004245 ORTHO05D004783 2.2e-63 245.7 151 82.8
FvH4_2g39911 Fragaria vesca HOM05D004245 ORTHO05D004783 2.2e-63 245.7 149 83.9
PSO832G4589 Papaver somniferum HOM05D004245 ORTHO05D004783 2.2e-63 245.7 149 83.2
Oeu029863.1 Olea europaea HOM05D004245 ORTHO05D004783 2.9e-63 245.4 141 87.2
Ca_15096_v3 Cicer arietinum L. HOM05D004245 ORTHO05D004783 3.8e-63 245.0 150 85.3
MD15G1031300 Malus domestica HOM05D004245 ORTHO05D004783 3.8e-63 245.0 151 84.1
Cc00_g32610 Coffea canephora HOM05D004245 ORTHO05D004783 5.0e-63 244.6 151 84.1
Lj4A41T61 Lonicera japonica HOM05D004245 ORTHO05D004783 6.5e-63 244.2 141 88.7
EL10Ac5g11904 Beta vulgaris HOM05D004245 ORTHO05D004783 8.5e-63 243.8 149 83.2
THA.LOC104813208 Tarenaya hassleriana HOM05D004245 ORTHO05D004783 8.5e-63 243.8 150 84.0
TPR.G19056 Trifolium pratense HOM05D004245 ORTHO05D004783 8.5e-63 243.8 149 83.9
TPR.G37404 Trifolium pratense HOM05D004245 ORTHO05D004783 8.5e-63 243.8 149 82.6
Lalb_Chr10g0103901 Lupinus albus HOM05D004245 ORTHO05D004783 1.1e-62 243.4 139 87.1
CAN.G1273.28 Capsicum annuum HOM05D004245 ORTHO05D004783 1.4e-62 243.0 149 82.6
Oeu056187.1 Olea europaea HOM05D004245 ORTHO05D004783 1.4e-62 243.0 150 84.0
AUR62007424 Chenopodium quinoa HOM05D004245 ORTHO05D004783 1.9e-62 242.7 149 85.9
Prupe.1G380600 Prunus persica HOM05D004245 ORTHO05D004783 1.9e-62 242.7 142 87.3
PGSC0003DMG400024725 Solanum tuberosum HOM05D004245 ORTHO05D004783 1.9e-62 242.7 149 83.2
TWI56G0048 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.9e-62 242.7 140 87.1
AT3G46940 Arabidopsis thaliana HOM05D004245 ORTHO05D004783 2.5e-62 242.3 149 81.2
QL02p008410 Quercus lobata HOM05D004245 ORTHO05D004783 2.5e-62 242.3 156 78.8
MSTRG.1283 Avicennia marina HOM05D004245 ORTHO05D004783 3.2e-62 241.9 141 82.3
CiPaw.15G077400 Carya illinoinensis HOM05D004245 ORTHO05D004783 3.2e-62 241.9 141 85.1
CANSAT11G0204 Cannabis sativa HOM05D004245 ORTHO05D004783 4.2e-62 241.5 153 82.4
CARHR155580 Cardamine hirsuta HOM05D004245 ORTHO05D004783 4.2e-62 241.5 150 82.0
Solyc01g100030.5.1 Solanum lycopersicum HOM05D004245 ORTHO05D004783 4.2e-62 241.5 141 86.5
HanXRQChr05g0151891 Helianthus annuus HOM05D004245 ORTHO05D004783 7.2e-62 240.7 140 87.1
HanXRQChr08g0223611 Helianthus annuus HOM05D004245 ORTHO05D004783 7.2e-62 240.7 140 86.4
Potri.002G261900 Populus trichocarpa HOM05D004245 ORTHO05D004783 7.2e-62 240.7 143 83.2
Aqoxy2G01756 Aquilegia oxysepala HOM05D004245 ORTHO05D004783 9.3e-62 240.4 139 86.3
AL5G26160 Arabidopsis lyrata HOM05D004245 ORTHO05D004783 9.3e-62 240.4 149 81.9
C03p71110 Brassica napus HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 83.0
BolC3t19396H Brassica oleracea HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 83.0
BraA06t25141Z Brassica rapa HOM05D004245 ORTHO05D004783 1.2e-61 240.0 141 83.0
Dinv36073 Davidia involucrata HOM05D004245 ORTHO05D004783 1.2e-61 240.0 139 87.1
Glyma.18G048400 Glycine max HOM05D004245 ORTHO05D004783 1.2e-61 240.0 149 81.2
Sp5g14800 Schrenkiella parvula HOM05D004245 ORTHO05D004783 1.2e-61 240.0 150 81.3
TAR381G1372 Trochodendron aralioides HOM05D004245 ORTHO05D004783 1.2e-61 240.0 139 88.5
A06p20620 Brassica napus HOM05D004245 ORTHO05D004783 1.6e-61 239.6 141 83.0
Thecc.08G025300 Theobroma cacao HOM05D004245 ORTHO05D004783 1.6e-61 239.6 139 84.9
Gohir.D05G198000 Gossypium hirsutum HOM05D004245 ORTHO05D004783 2.1e-61 239.2 143 82.5
Phvul.008G243100 Phaseolus vulgaris HOM05D004245 ORTHO05D004783 2.1e-61 239.2 147 81.0
QL02p008145 Quercus lobata HOM05D004245 ORTHO05D004783 2.1e-61 239.2 156 78.2
Atru.chr13.494 Acer truncatum HOM05D004245 ORTHO05D004783 2.7e-61 238.8 139 84.9
Eucgr.F01560 Eucalyptus grandis HOM05D004245 ORTHO05D004783 2.7e-61 238.8 140 85.7
Actinidia29827 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.6e-61 238.4 145 81.4
MSTRG.22299 Avicennia marina HOM05D004245 ORTHO05D004783 3.6e-61 238.4 152 80.3
Gohir.A05G194800 Gossypium hirsutum HOM05D004245 ORTHO05D004783 3.6e-61 238.4 143 82.5
Ciclev10002428m.g Citrus clementina HOM05D004245 ORTHO05D004783 4.6e-61 238.0 139 85.6
Gorai.009G203100 Gossypium raimondii HOM05D004245 ORTHO05D004783 4.6e-61 238.0 143 81.8
Sopen01g043550 Solanum pennellii HOM05D004245 ORTHO05D004783 4.6e-61 238.0 141 85.8
GSVIVG01009696001 Vitis vinifera HOM05D004245 ORTHO05D004783 6.1e-61 237.7 139 87.1
DCAR_020361 Daucus carota HOM05D004245 ORTHO05D004783 1.0e-60 236.9 139 84.9
Carub.0005s1316 Capsella rubella HOM05D004245 ORTHO05D004783 1.8e-60 236.1 151 79.5
COL.COLO4_26330 Corchorus olitorius HOM05D004245 ORTHO05D004783 1.8e-60 236.1 139 84.2
ECA246G2445 Erigeron canadensis HOM05D004245 ORTHO05D004783 2.3e-60 235.7 145 83.4
MD08G1034400 Malus domestica HOM05D004245 ORTHO05D004783 2.3e-60 235.7 145 83.4
Manes.18G027901 Manihot esculenta HOM05D004245 ORTHO05D004783 2.3e-60 235.7 140 81.4
Cpa.g.sc36.67 Carica papaya HOM05D004245 ORTHO05D004783 3.0e-60 235.3 139 87.1
Glyma.14G207800 Glycine max HOM05D004245 ORTHO05D004783 3.0e-60 235.3 148 80.4
Sc02g0006240 Simmondsia chinensis HOM05D004245 ORTHO05D004783 3.0e-60 235.3 152 79.6
TWI12G0235 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 3.9e-60 235.0 140 84.3
TAR365G0431 Trochodendron aralioides HOM05D004245 ORTHO05D004783 3.9e-60 235.0 139 86.3
Ah.12g056070 Amaranthus hybridus HOM05D004245 ORTHO05D004783 6.7e-60 234.2 141 85.1
Duzib116G0455 Durio zibethinus HOM05D004245 ORTHO05D004783 8.7e-60 233.8 139 83.5
Actinidia22552 Actinidia chinensis HOM05D004245 ORTHO05D004783 1.1e-59 233.4 139 84.2
Lalb_Chr17g0345751 Lupinus albus HOM05D004245 ORTHO05D004783 1.5e-59 233.0 138 84.8
Atru.chr13.1763 Acer truncatum HOM05D004245 ORTHO05D004783 2.5e-59 232.3 139 84.9
Nn1g05030 Nelumbo nucifera HOM05D004245 ORTHO05D004783 2.5e-59 232.3 139 84.2
GSVIVG01037336001 Vitis vinifera HOM05D004245 ORTHO05D004783 2.5e-59 232.3 139 85.6
PGR031G3519 Punica granatum HOM05D004245 ORTHO05D004783 3.3e-59 231.9 141 83.7
Actinidia38010 Actinidia chinensis HOM05D004245 ORTHO05D004783 4.3e-59 231.5 145 79.3
Aa31LG4G15890 Aethionema arabicum HOM05D004245 ORTHO05D004783 4.3e-59 231.5 141 83.0
MELO3C010935.2 Cucumis melo HOM05D004245 ORTHO05D004783 4.3e-59 231.5 150 78.0
Manes.05G161000 Manihot esculenta HOM05D004245 ORTHO05D004783 4.3e-59 231.5 140 82.1
Nn5g29570 Nelumbo nucifera HOM05D004245 ORTHO05D004783 7.4e-59 230.7 139 83.5
Ciclev10009684m.g Citrus clementina HOM05D004245 ORTHO05D004783 9.7e-59 230.3 151 78.8
CsaV3_2G028630 Cucumis sativus L. HOM05D004245 ORTHO05D004783 3.7e-58 228.4 147 79.6
VMungo0647G1970 Vigna mungo HOM05D004245 ORTHO05D004783 3.7e-58 228.4 145 79.3
MBI16_g37752_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 6.3e-58 227.6 137 83.9
PSO591G0217 Papaver somniferum HOM05D004245 ORTHO05D004783 6.3e-58 227.6 149 79.2
Migut.N00497 Erythranthe guttata HOM05D004245 ORTHO05D004783 3.1e-57 225.3 142 83.1
CDE12G0639 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 4.1e-57 224.9 139 82.0
ClCG08G015180 Citrullus lanatus HOM05D004245 ORTHO05D004783 4.1e-57 224.9 150 76.0
Duzib093G0228 Durio zibethinus HOM05D004245 ORTHO05D004783 4.1e-57 224.9 139 80.6
Rhsim06G0034500 Rhododendron simsii HOM05D004245 ORTHO05D004783 4.1e-57 224.9 139 80.6
MBI16_g37698_MAGBIO Magnolia biondii HOM05D004245 ORTHO05D004783 6.9e-57 224.2 152 77.0
CDE04G3793 Ceratophyllum demersum HOM05D004245 ORTHO05D004783 1.2e-56 223.4 139 82.0
TWI36G0248 Tripterygium wilfordii HOM05D004245 ORTHO05D004783 1.5e-56 223.0 139 81.3
PSO764G0231 Papaver somniferum HOM05D004245 ORTHO05D004783 2.2e-55 219.2 146 75.3
SEGI_17618 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 2.9e-55 218.8 142 76.8
Rhsim07G0237700 Rhododendron simsii HOM05D004245 ORTHO05D004783 6.5e-55 217.6 175 66.9
HPP92_000905 Vanilla planifolia HOM05D004245 ORTHO05D004783 6.5e-55 217.6 148 75.7
Zm00001eb052270 Zea mays HOM05D004245 ORTHO05D004783 1.1e-54 216.9 139 80.6
Sabra04G0142000 Salix brachista HOM05D004298 ORTHO05D006236 1.9e-54 216.1 168 67.9
ATR0124G052 Amborella trichopoda HOM05D004245 ORTHO05D004783 5.5e-54 214.5 139 79.1
Pp3c16_25660 Physcomitrium patens HOM05D004245 ORTHO05D004783 1.2e-53 213.4 138 79.7
Sabra02G0198600 Salix brachista HOM05D004245 ORTHO05D004783 1.6e-53 213.0 169 66.3
MD08G1034500 Malus domestica HOM05D004245 ORTHO05D004783 3.6e-53 211.8 145 77.2
Mapoly0133s0010 Marchantia polymorpha HOM05D004245 ORTHO05D004783 1.8e-52 209.5 138 73.2
SMO146G0275 Selaginella moellendorffii HOM05D004245 ORTHO05D004783 2.3e-52 209.1 137 75.2
SEGI_12681 Sequoiadendron giganteum HOM05D004245 ORTHO05D004783 3.0e-52 208.8 145 73.8
AagrBONN_evm.TU.Sc2ySwM_117.1092 Anthoceros agrestis HOM05D004245 ORTHO05D004783 2.6e-51 205.7 138 74.6
HPP92_000939 Vanilla planifolia HOM05D004245 ORTHO05D004783 7.4e-51 204.1 156 70.5
Os03g0669100 Oryza sativa ssp. japonica HOM05D004245 ORTHO05D004783 3.1e-49 198.7 142 73.2
CBR_g37457 Chara braunii HOM05D004245 ORTHO05D004783 3.8e-47 191.8 144 68.8
MCO05G374 Micromonas commoda HOM05D004245 ORTHO05D004783 1.1e-46 190.3 141 70.2
Cre16.g667850 Chlamydomonas reinhardtii HOM05D004245 ORTHO05D004783 7.9e-45 184.1 137 65.7
Cfa018144 Carpinus fangiana HOM05D004245 ORTHO05D004783 2.7e-37 159.1 158 58.9
PRCOL_00002276 Prasinoderma coloniale HOM05D004245 ORTHO05D004783 8.0e-37 157.5 140 60.0
Peaxi162Scf00690g00216 Petunia axillaris HOM05D004245 ORTHO05D004783 2.0e-35 152.9 128 64.8
Cc10_g02990 Coffea canephora HOM05D004245 ORTHO05D004783 7.5e-35 151.0 119 67.2
Nitab4.5_0004954g0010 Nicotiana tabacum HOM05D004245 ORTHO05D004783 7.5e-35 151.0 119 67.2
PGSC0003DMG400005159 Solanum tuberosum HOM05D004245 ORTHO05D004783 2.4e-33 146.0 119 63.9
unitig_85.g27241 Utricularia gibba HOM05D004245 ORTHO05D004783 4.1e-33 145.2 82 82.9
CAN.G1226.1 Capsicum annuum HOM05D004245 ORTHO05D004783 5.3e-33 144.8 116 65.5
Solyc04g080250.3 Solanum lycopersicum HOM05D004245 ORTHO05D004783 5.9e-32 141.4 119 63.0
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 3.2e-30 135.6 112 62.5
Oeu029862.1 Olea europaea HOM05D004245 ORTHO05D004783 9.4e-30 134.0 97 69.1
CBR_g21266 Chara braunii HOM05D004245 ORTHO05D004783 1.2e-29 133.7 137 51.1
unitig_578.g16734 Utricularia gibba HOM05D004245 ORTHO05D004783 1.2e-29 133.7 129 58.9
CBR_g21272 Chara braunii HOM05D004245 ORTHO05D004783 5.2e-28 128.3 137 47.4
Atru.chr6.1642 Acer truncatum HOM05D004245 ORTHO05D004783 1.1e-25 120.6 82 69.5
SHI03308 Sapria himalayana HOM05D004245 ORTHO05D004783 4.1e-25 118.6 114 56.1
Sopen04g033830 Solanum pennellii HOM05D004245 ORTHO05D004783 1.2e-24 117.1 85 69.4
Peaxi162Scf00225g00127 Petunia axillaris HOM05D004245 ORTHO05D004783 8.5e-23 110.9 82 76.8
Nitab4.5_0002361g0180 Nicotiana tabacum HOM05D004245 ORTHO05D004783 3.2e-22 109.0 70 87.1
Nitab4.5_0002840g0080 Nicotiana tabacum HOM05D004245 ORTHO05D004783 4.7e-21 105.1 80 76.2
SHI09478 Sapria himalayana HOM05D004245 ORTHO05D004783 1.0e-20 104.0 70 71.4
Atru.chr6.1643 Acer truncatum HOM05D004245 ORTHO05D004783 1.8e-20 103.2 69 71.0
Peaxi162Scf00037g01715 Petunia axillaris HOM05D004245 ORTHO05D004783 3.0e-20 102.4 59 91.5
DCAR_020970 Daucus carota HOM05D004245 ORTHO05D004783 4.0e-20 102.1 62 83.9
Nitab4.5_0006179g0050 Nicotiana tabacum HOM05D004245 ORTHO05D004783 6.8e-20 101.3 86 64.0
SGA_v2.0_scaffold326G48710 Striga asiatica HOM05D004245 ORTHO05D004783 1.2e-19 100.5 67 79.1
vmacro04520 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 2.6e-19 99.4 64 81.2
Cfa018886 Carpinus fangiana HOM05D004245 ORTHO05D004783 4.4e-19 98.6 79 68.4
Nitab4.5_0002612g0110 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.7e-19 98.2 67 77.6
Hund11091 Selenicereus undatus HOM05D004245 ORTHO05D004783 5.7e-19 98.2 69 76.8
Lsat_1_v5_gn_5_29181 Lactuca sativa HOM05D004245 ORTHO05D004783 3.7e-18 95.5 59 81.4
Lsat_1_v5_gn_8_78860 Lactuca sativa HOM05D004245 ORTHO05D004783 1.1e-17 94.0 58 82.8
Atru.chr2.1957 Acer truncatum HOM05D004245 ORTHO05D004783 1.8e-17 93.2 56 73.2
Sed0016726 Sechium edule HOM05D004245 ORTHO05D004783 1.8e-17 93.2 61 80.3
Atru.chr13.1771 Acer truncatum HOM05D004245 ORTHO05D004783 1.4e-12 77.0 85 50.6
SHI20747 Sapria himalayana HOM05D003927 ORTHO05D004905 4.0e-12 75.5 56 67.9
COL.COLO4_04917 Corchorus olitorius HOM05D004245 ORTHO05D004783 2.0e-11 73.2 45 77.8
Lsat_1_v5_gn_0_32861 Lactuca sativa HOM05D031264 ORTHO05D004783 4.4e-11 72.0 124 40.3
vmacro21634 Vaccinium macrocarpon HOM05D004245 ORTHO05D004783 9.8e-11 70.9 88 51.1
Actinidia15321 Actinidia chinensis HOM05D004245 ORTHO05D004783 3.2e-09 65.9 58 60.3
Dinv03456 Davidia involucrata HOM05D004245 ORTHO05D004783 2.7e-08 62.8 87 44.8
Eucgr.C01497 Eucalyptus grandis HOM05D004245 ORTHO05D004783 1.0e-07 60.8 44 68.2
SGA_v2.0_scaffold54G19528 Striga asiatica HOM05D016034 ORTHO05D000013 5.0e-07 58.5 40 67.5
arahy.Tifrunner.gnm1.ann1.8Q4PR4 Arachis hypogaea HOM05D004245 ORTHO05D004783 2.5e-06 56.2 37 73.0
Nitab4.5_0000110g0590 Nicotiana tabacum HOM05D004245 ORTHO05D004783 5.6e-06 55.1 44 63.6


User provided reference genes

Program Settings