Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.137 Capsicum annuum HOM05D004997 ORTHO05D005921 5.4e-60 234.2 123 100.0
CAN.G3523.1 Capsicum annuum HOM05D004997 ORTHO05D005921 3.4e-54 214.9 123 91.9
CAN.G134.135 Capsicum annuum HOM05D004997 ORTHO05D000105 9.0e-39 163.7 95 90.5
CAN.G134.136 Capsicum annuum HOM05D004997 ORTHO05D005921 2.9e-37 158.7 95 88.4
Solyc08g016420.3 Solanum lycopersicum HOM05D004997 ORTHO05D005921 6.4e-37 157.5 95 88.4
Sopen08g006800 Solanum pennellii HOM05D004997 ORTHO05D005921 2.4e-36 155.6 95 87.4
PGSC0003DMG400009647 Solanum tuberosum HOM05D004997 ORTHO05D005921 2.4e-36 155.6 94 87.2
Dinv32261 Davidia involucrata HOM05D004997 ORTHO05D005921 1.6e-35 152.9 95 83.2
Manes.11G058500 Manihot esculenta HOM05D004997 ORTHO05D005921 2.7e-35 152.1 95 81.1
Cfa000953 Carpinus fangiana HOM05D004997 ORTHO05D005921 3.5e-35 151.8 95 82.1
PSO339G4484 Papaver somniferum HOM05D004997 ORTHO05D005921 3.5e-35 151.8 95 82.1
PSO384G3576 Papaver somniferum HOM05D004997 ORTHO05D005921 3.5e-35 151.8 95 82.1
CANSAT35G1260 Cannabis sativa HOM05D004997 ORTHO05D005921 6.0e-35 151.0 94 83.0
CiPaw.10G092400 Carya illinoinensis HOM05D004997 ORTHO05D005921 7.9e-35 150.6 95 80.0
Thecc.06G151500 Theobroma cacao HOM05D004997 ORTHO05D005921 7.9e-35 150.6 94 81.9
Duzib192G0549 Durio zibethinus HOM05D004997 ORTHO05D005921 1.0e-34 150.2 96 80.2
Duzib235G0692 Durio zibethinus HOM05D004997 ORTHO05D005921 1.0e-34 150.2 90 84.4
Gohir.D05G151300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.0e-34 150.2 94 81.9
Gorai.009G155300 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.0e-34 150.2 94 81.9
Actinidia07691 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.8e-34 149.4 95 81.1
Carub.0001s2824 Capsella rubella HOM05D004997 ORTHO05D005921 3.0e-34 148.7 95 80.0
Eucgr.E02397 Eucalyptus grandis HOM05D004997 ORTHO05D005921 3.0e-34 148.7 95 78.9
Gohir.A10G040300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 3.0e-34 148.7 94 80.9
Oeu034156.1 Olea europaea HOM05D004997 ORTHO05D005921 3.0e-34 148.7 92 81.5
Potri.004G131900 Populus trichocarpa HOM05D004997 ORTHO05D005921 3.0e-34 148.7 95 81.1
MSTRG.7483 Avicennia marina HOM05D004997 ORTHO05D005921 5.1e-34 147.9 89 84.3
Gohir.A05G148700 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.1e-34 147.9 94 81.9
CARHR029400 Cardamine hirsuta HOM05D004997 ORTHO05D005921 6.7e-34 147.5 95 78.9
TWI38G0351 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 6.7e-34 147.5 92 81.5
AL1G43880 Arabidopsis lyrata HOM05D004997 ORTHO05D005921 8.7e-34 147.1 95 78.9
MD10G1262900 Malus domestica HOM05D004997 ORTHO05D005921 8.7e-34 147.1 95 78.9
Oeu052376.1 Olea europaea HOM05D004997 ORTHO05D005921 8.7e-34 147.1 95 77.9
SGA_v2.0_scaffold1G00167 Striga asiatica HOM05D004997 ORTHO05D005921 8.7e-34 147.1 89 84.3
TPR.G13287 Trifolium pratense HOM05D004997 ORTHO05D005921 8.7e-34 147.1 95 78.9
Atru.chr10.1243 Acer truncatum HOM05D004997 ORTHO05D005921 1.5e-33 146.4 95 80.0
CiPaw.09G124400 Carya illinoinensis HOM05D004997 ORTHO05D005921 1.5e-33 146.4 95 77.9
CsaV3_1G032650 Cucumis sativus L. HOM05D004997 ORTHO05D005921 1.5e-33 146.4 95 78.9
MD05G1284500 Malus domestica HOM05D004997 ORTHO05D005921 1.5e-33 146.4 95 78.9
Prupe.4G079900 Prunus persica HOM05D004997 ORTHO05D005921 1.5e-33 146.4 95 78.9
Gohir.D10G041200 Gossypium hirsutum HOM05D004997 ORTHO05D005921 1.9e-33 146.0 94 79.8
Gorai.011G043400 Gossypium raimondii HOM05D004997 ORTHO05D005921 1.9e-33 146.0 94 79.8
Medtr5g055650 Medicago truncatula HOM05D004997 ORTHO05D005921 1.9e-33 146.0 93 79.6
CSS0020008 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.5e-33 145.6 95 77.9
MELO3C002717.2 Cucumis melo HOM05D004997 ORTHO05D005921 2.5e-33 145.6 95 77.9
Psat2g084800 Pisum sativum HOM05D004997 ORTHO05D005921 4.3e-33 144.8 93 79.6
SGA_v2.0_scaffold333G48998 Striga asiatica HOM05D004997 ORTHO05D005921 4.3e-33 144.8 94 78.7
AT1G29990 Arabidopsis thaliana HOM05D004997 ORTHO05D005921 5.6e-33 144.4 93 79.6
Dinv30737 Davidia involucrata HOM05D004997 ORTHO05D005921 5.6e-33 144.4 92 80.4
FAN21G2809 Fragaria x ananassa HOM05D004997 ORTHO05D005921 5.6e-33 144.4 95 78.9
HanXRQChr01g0020611 Helianthus annuus HOM05D004997 ORTHO05D005921 5.6e-33 144.4 94 79.8
HanXRQChr11g0340951 Helianthus annuus HOM05D004997 ORTHO05D005921 5.6e-33 144.4 89 83.1
Lj5g0010316 Lotus japonicus HOM05D004997 ORTHO05D005921 5.6e-33 144.4 93 78.5
Aqoxy3G00593 Aquilegia oxysepala HOM05D004997 ORTHO05D005921 7.4e-33 144.1 94 78.7
Gorai.002G185400 Gossypium raimondii HOM05D004997 ORTHO05D005921 7.4e-33 144.1 94 79.8
Phvul.002G321900 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 7.4e-33 144.1 93 79.6
TAR626G0896 Trochodendron aralioides HOM05D004997 ORTHO05D005921 7.4e-33 144.1 95 76.8
Nn4g24866 Nelumbo nucifera HOM05D004997 ORTHO05D005921 9.6e-33 143.7 95 75.8
RcHm_v2.0_Chr5g0013981 Rosa chinensis HOM05D004997 ORTHO05D005921 9.6e-33 143.7 95 77.9
THA.LOC104814295 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 9.6e-33 143.7 95 76.8
Ah.09g232610 Amaranthus hybridus HOM05D000413 ORTHO05D000292 1.3e-32 143.3 95 76.8
ECA233G0220 Erigeron canadensis HOM05D004997 ORTHO05D005921 1.3e-32 143.3 88 83.0
Migut.M00914 Erythranthe guttata HOM05D004997 ORTHO05D005921 1.3e-32 143.3 88 81.8
Lj4g0009583 Lotus japonicus HOM05D004997 ORTHO05D005921 1.3e-32 143.3 93 77.4
unitig_32.g11442 Utricularia gibba HOM05D004997 ORTHO05D005921 1.3e-32 143.3 86 82.6
MSTRG.16239 Avicennia marina HOM05D004997 ORTHO05D005921 1.6e-32 142.9 89 80.9
EL10Ac8g19712 Beta vulgaris HOM05D004997 ORTHO05D005921 1.6e-32 142.9 99 73.7
FvH4_3g05660 Fragaria vesca HOM05D004997 ORTHO05D005921 1.6e-32 142.9 94 77.7
FAN11G3072 Fragaria x ananassa HOM05D004997 ORTHO05D005921 1.6e-32 142.9 94 77.7
THA.LOC104812669 Tarenaya hassleriana HOM05D004997 ORTHO05D005921 1.6e-32 142.9 95 76.8
Sed0005528 Sechium edule HOM05D004997 ORTHO05D005921 2.1e-32 142.5 95 76.8
TWI38G1166 Tripterygium wilfordii HOM05D004997 ORTHO05D005921 2.1e-32 142.5 86 83.7
arahy.Tifrunner.gnm1.ann1.7IX92P Arachis hypogaea HOM05D004997 ORTHO05D005921 2.8e-32 142.1 86 81.4
Ciclev10017164m.g Citrus clementina HOM05D004997 ORTHO05D005921 3.7e-32 141.7 95 77.9
Glyma.12G006600 Glycine max HOM05D004997 ORTHO05D005921 3.7e-32 141.7 93 77.4
Lalb_Chr05g0222161 Lupinus albus HOM05D004997 ORTHO05D005921 3.7e-32 141.7 89 79.8
Sc17g0004940 Simmondsia chinensis HOM05D004997 ORTHO05D005921 3.7e-32 141.7 92 77.2
VMungo0251G3606 Vigna mungo HOM05D004997 ORTHO05D005921 3.7e-32 141.7 93 78.5
Thhalv10009093m.g Eutrema salsugineum HOM05D004997 ORTHO05D005921 4.8e-32 141.4 95 76.8
arahy.Tifrunner.gnm1.ann1.06CE9J Arachis hypogaea HOM05D004997 ORTHO05D005921 6.2e-32 141.0 85 81.2
QL06p022817 Quercus lobata HOM05D004997 ORTHO05D005921 6.2e-32 141.0 100 74.0
HPP92_006252 Vanilla planifolia HOM05D004997 ORTHO05D005921 6.2e-32 141.0 95 74.7
Os02g0246300 Oryza sativa ssp. japonica HOM05D004997 ORTHO05D005921 8.2e-32 140.6 91 75.8
GSVIVG01021444001 Vitis vinifera HOM05D004997 ORTHO05D005921 8.2e-32 140.6 89 80.9
Glyma.08G046600 Glycine max HOM05D004997 ORTHO05D005921 1.1e-31 140.2 93 76.3
Sp1g25870 Schrenkiella parvula HOM05D004997 ORTHO05D005921 1.1e-31 140.2 95 75.8
BcaB07g32600 Brassica carinata HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
BcaC05g27010 Brassica carinata HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
A09p36530 Brassica napus HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
C05p28750 Brassica napus HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
BolC5t31593H Brassica oleracea HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
BraA09t39174Z Brassica rapa HOM05D004997 ORTHO05D005921 1.4e-31 139.8 92 76.1
Sed0006544 Sechium edule HOM05D004997 ORTHO05D005921 1.8e-31 139.4 95 74.7
arahy.Tifrunner.gnm1.ann1.FF119L Arachis hypogaea HOM05D004997 ORTHO05D005921 2.4e-31 139.0 85 80.0
CDE02G0055 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.4e-31 139.0 95 73.7
BcaB03g13847 Brassica carinata HOM05D004997 ORTHO05D005921 6.9e-31 137.5 91 74.7
BcaC06g35482 Brassica carinata HOM05D004997 ORTHO05D005921 1.2e-30 136.7 91 74.7
BolC7t42045H Brassica oleracea HOM05D004997 ORTHO05D005921 1.2e-30 136.7 91 74.7
CDE09G0791 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 2.0e-30 136.0 95 71.6
QL05p058391 Quercus lobata HOM05D004997 ORTHO05D005921 2.6e-30 135.6 112 66.1
Gohir.D01G100600 Gossypium hirsutum HOM05D004997 ORTHO05D005921 7.6e-30 134.0 94 76.6
ATR0743G157 Amborella trichopoda HOM05D004997 ORTHO05D005921 1.7e-29 132.9 93 71.0
DCAR_027919 Daucus carota HOM05D000413 ORTHO05D000292 1.7e-29 132.9 106 70.8
Gorai.002G125400 Gossypium raimondii HOM05D004997 ORTHO05D005921 2.9e-29 132.1 94 75.5
PGR042G1500 Punica granatum HOM05D004997 ORTHO05D005921 8.4e-29 130.6 95 72.6
SalBow8G3614 Salvia bowleyana HOM05D004997 ORTHO05D005921 8.4e-29 130.6 102 68.6
A07p10100 Brassica napus HOM05D004997 ORTHO05D005921 1.4e-28 129.8 95 70.5
SEGI_33388 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.4e-28 129.8 95 70.5
SEGI_19850 Sequoiadendron giganteum HOM05D004997 ORTHO05D005921 1.9e-28 129.4 92 71.7
BraA07t28803Z Brassica rapa HOM05D004997 ORTHO05D005921 2.5e-28 129.0 91 72.5
FAN25G0101 Fragaria x ananassa HOM05D004997 ORTHO05D005921 7.1e-28 127.5 106 66.0
SMO367G0874 Selaginella moellendorffii HOM05D004997 ORTHO05D005921 1.8e-26 122.9 89 68.5
C07p15580 Brassica napus HOM05D004997 ORTHO05D005921 6.7e-26 120.9 91 69.2
ClCG03G007080 Citrullus lanatus HOM05D004997 ORTHO05D005921 8.7e-26 120.6 150 49.3
Lsat_1_v5_gn_5_30841 Lactuca sativa HOM05D004997 ORTHO05D005921 2.5e-25 119.0 71 83.1
Pp3c22_1770 Physcomitrium patens HOM05D004997 ORTHO05D005921 9.7e-25 117.1 86 65.1
Zm00001eb238610 Zea mays HOM05D004997 ORTHO05D005921 1.6e-24 116.3 91 67.0
Lsat_1_v5_gn_1_91801 Lactuca sativa HOM05D004997 ORTHO05D005921 2.2e-24 115.9 70 82.9
Nitab4.5_0000348g0240 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.2e-24 115.9 92 69.6
Nitab4.5_0010327g0020 Nicotiana tabacum HOM05D004997 ORTHO05D005921 2.2e-24 115.9 92 69.6
MBI07_g26358_MAGBIO Magnolia biondii HOM05D004997 ORTHO05D005921 4.8e-24 114.8 72 79.2
COL.COLO4_31081 Corchorus olitorius HOM05D004997 ORTHO05D005921 8.2e-24 114.0 69 82.6
Mapoly0006s0079 Marchantia polymorpha HOM05D004997 ORTHO05D005921 8.2e-24 114.0 88 63.6
Hund21531 Selenicereus undatus HOM05D004997 ORTHO05D005921 2.4e-23 112.5 90 66.7
CDE02G2003 Ceratophyllum demersum HOM05D004997 ORTHO05D005921 4.1e-23 111.7 70 80.0
vmacro04021 Vaccinium macrocarpon HOM05D004997 ORTHO05D005921 4.1e-23 111.7 69 79.7
Prupe.3G104900 Prunus persica HOM05D004997 ORTHO05D005921 9.0e-23 110.5 69 79.7
Rhsim13G0211800 Rhododendron simsii HOM05D004997 ORTHO05D005921 1.5e-22 109.8 68 79.4
AagrBONN_evm.TU.Sc2ySwM_344.2433 Anthoceros agrestis HOM05D004997 ORTHO05D005921 2.6e-22 109.0 95 55.8
CSS0046404 Camellia sinensis var. sinensis HOM05D004997 ORTHO05D005921 2.6e-22 109.0 69 78.3
AUR62039776 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.6e-22 109.0 68 79.4
FAN16G0953 Fragaria x ananassa HOM05D004997 ORTHO05D005921 2.6e-22 109.0 69 79.7
Cc02_g37190 Coffea canephora HOM05D004997 ORTHO05D005921 7.6e-22 107.5 95 63.2
Aa31LG6G5670 Aethionema arabicum HOM05D004997 ORTHO05D005921 9.3e-20 100.5 97 58.8
Actinidia39569 Actinidia chinensis HOM05D004997 ORTHO05D005921 1.8e-15 86.3 95 55.8
Gohir.D01G149300 Gossypium hirsutum HOM05D004997 ORTHO05D005921 5.3e-15 84.7 50 84.0
Peaxi162Scf01211g00142 Petunia axillaris HOM05D004997 ORTHO05D005921 2.6e-14 82.4 52 80.8
Manes.09G021201 Manihot esculenta HOM05D004997 ORTHO05D005921 1.0e-13 80.5 95 53.7
PRCOL_00000028 Prasinoderma coloniale HOM05D004997 ORTHO05D005921 1.7e-13 79.7 83 50.6
Haze_05586 Corylus avellana HOM05D004997 ORTHO05D005921 2.9e-13 79.0 168 38.1
Phvul.009G128800 Phaseolus vulgaris HOM05D004997 ORTHO05D005921 3.8e-13 78.6 49 81.6
Haze_05599 Corylus avellana HOM05D004997 ORTHO05D005921 5.0e-13 78.2 165 37.0
MCO01G210 Micromonas commoda HOM05D004997 ORTHO05D005921 2.1e-11 72.8 86 44.2
AUR62030207 Chenopodium quinoa HOM05D004997 ORTHO05D005921 2.7e-11 72.4 45 80.0
Sabra04G0085700 Salix brachista HOM05D004997 ORTHO05D005921 3.6e-11 72.0 45 77.8
Zm00001eb151600 Zea mays HOM05D000394 ORTHO05D016690 3.9e-10 68.6 43 76.7
Zm00001eb258640 Zea mays HOM05D004997 ORTHO05D005921 3.9e-10 68.6 43 76.7
Zm00001eb310800 Zea mays HOM05D000394 ORTHO05D016690 1.1e-09 67.0 43 74.4
Zm00001eb139040 Zea mays HOM05D000901 ORTHO05D005921 2.0e-09 66.2 42 76.2
Zm00001eb269380 Zea mays HOM05D000901 ORTHO05D005921 2.6e-09 65.9 48 68.8
Zm00001eb225310 Zea mays HOM05D000901 ORTHO05D005921 7.4e-09 64.3 42 73.8
Zm00001eb344510 Zea mays HOM05D000901 ORTHO05D000768 1.7e-08 63.2 45 68.9
Cre12.g502750 Chlamydomonas reinhardtii HOM05D004997 ORTHO05D005921 2.8e-08 62.4 88 36.4
Cfa022129 Carpinus fangiana HOM05D004997 ORTHO05D005921 4.5e-06 55.1 95 34.7


User provided reference genes

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