Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 4.3e-167 591.3 301 100.0
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 4.9e-163 577.8 301 97.0
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 7.1e-162 573.9 301 96.0
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 6.6e-160 567.4 301 94.7
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 6.8e-157 557.4 301 94.0
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 9.9e-148 526.9 302 90.1
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 3.3e-143 511.9 300 83.7
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 2.8e-142 508.8 301 83.4
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 5.3e-141 504.6 301 83.4
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 82.0
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 9.0e-141 503.8 300 82.3
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.2e-140 503.4 300 82.3
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.2e-140 503.4 301 83.4
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 1.5e-140 503.1 301 82.1
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 3.4e-140 501.9 301 81.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 2.2e-139 499.2 300 81.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 2.9e-139 498.8 300 81.7
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 4.9e-139 498.0 300 80.0
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 6.4e-139 497.7 299 82.6
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 6.4e-139 497.7 301 81.4
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 6.4e-139 497.7 300 81.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 8.4e-139 497.3 301 81.4
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 1.4e-138 496.5 317 78.9
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.9e-138 496.1 301 81.1
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.9e-138 496.1 301 80.4
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 3.2e-138 495.4 300 82.7
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 4.2e-138 495.0 300 82.3
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 5.4e-138 494.6 300 79.7
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.1e-138 494.2 301 80.4
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.1e-138 494.2 301 80.1
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.2e-137 493.4 300 80.3
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.2e-137 493.4 261 95.4
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 2.1e-137 492.7 300 81.0
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 2.7e-137 492.3 300 80.3
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.7e-137 492.3 301 80.1
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 2.7e-137 492.3 300 81.3
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 6.0e-137 491.1 300 81.0
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 7.9e-137 490.7 301 79.7
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.0e-136 490.3 299 79.9
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 1.0e-136 490.3 300 80.0
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 1.3e-136 490.0 300 81.7
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 2.3e-136 489.2 300 79.7
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 2.3e-136 489.2 301 81.1
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 79.7
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 80.3
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.9e-136 488.4 300 80.0
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 5.1e-136 488.0 299 79.6
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 5.1e-136 488.0 301 79.4
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 5.1e-136 488.0 299 79.9
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.0
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.0
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.3
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 1.1e-135 486.9 300 79.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 1.5e-135 486.5 300 80.3
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.9e-135 486.1 300 79.7
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 4.3e-135 485.0 300 79.0
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 5.6e-135 484.6 300 78.7
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 79.0
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 7.4e-135 484.2 297 79.5
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 7.4e-135 484.2 300 78.7
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.3e-134 483.4 300 79.0
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 2.1e-134 482.6 300 78.7
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 4.8e-134 481.5 300 77.7
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 4.8e-134 481.5 300 78.0
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 4.8e-134 481.5 300 79.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 6.2e-134 481.1 300 78.3
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 1.4e-133 479.9 302 78.1
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 1.4e-133 479.9 300 79.0
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 2.4e-133 479.2 300 78.0
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 2.4e-133 479.2 300 78.7
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 2.4e-133 479.2 300 78.0
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 4.0e-133 478.4 299 78.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.3e-133 478.0 303 77.6
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 5.3e-133 478.0 302 77.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.3e-133 478.0 303 77.6
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 5.3e-133 478.0 302 77.5
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 9.0e-133 477.2 303 77.2
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 9.0e-133 477.2 302 76.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 1.2e-132 476.9 302 77.2
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 1.2e-132 476.9 300 77.3
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 1.5e-132 476.5 302 76.5
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 1.5e-132 476.5 300 77.7
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 2.0e-132 476.1 302 77.2
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 2.0e-132 476.1 303 76.9
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.6e-132 475.7 300 78.3
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 2.6e-132 475.7 302 77.2
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 3.4e-132 475.3 302 76.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 3.4e-132 475.3 303 77.2
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 3.4e-132 475.3 301 77.4
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 4.5e-132 474.9 300 77.3
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 7.6e-132 474.2 300 77.7
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 1.3e-131 473.4 300 77.7
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 2.2e-131 472.6 304 77.0
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 1.1e-130 470.3 302 76.2
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 2.4e-130 469.2 300 76.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.6e-129 466.5 299 76.6
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 2.1e-129 466.1 301 76.1
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.7e-129 465.7 299 76.6
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 6.0e-129 464.5 317 73.2
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 7.9e-129 464.2 301 75.7
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.8e-128 463.0 301 75.4
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 2.3e-128 462.6 320 73.4
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 6.7e-128 461.1 300 76.0
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 8.7e-128 460.7 335 70.7
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 3.3e-127 458.8 304 74.7
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 5.6e-127 458.0 304 74.0
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 1.6e-126 456.4 304 73.7
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 6.2e-126 454.5 302 73.8
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 8.2e-126 454.1 300 72.3
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 6.9e-125 451.1 340 67.9
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 2.0e-124 449.5 300 73.7
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.3e-123 446.8 306 72.2
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 2.2e-123 446.0 299 72.6
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 8.4e-123 444.1 298 73.5
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 3.1e-117 425.6 289 70.9
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-115 420.6 241 83.4
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 5.0e-115 418.3 309 71.5
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 8.5e-115 417.5 289 70.2
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 1.2e-113 413.7 300 71.0
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 2.1e-113 412.9 249 79.5
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 6.1e-113 411.4 340 62.6
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 6.1e-113 411.4 299 65.2
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 6.1e-113 411.4 287 69.7
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.2e-110 402.9 300 67.7
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.4e-104 383.6 300 65.7
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 3.1e-101 372.5 299 61.5
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.9e-98 363.2 508 43.9
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.8e-96 356.7 301 63.8
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.8e-96 356.7 209 80.4
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 1.3e-94 350.5 209 79.9
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 3.1e-93 345.9 297 58.6
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.5e-92 342.4 290 57.2
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.1e-89 333.2 219 74.4
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 1.2e-87 327.4 199 79.9
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.3e-83 313.9 243 68.7
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 8.6e-75 284.6 303 50.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.5e-74 283.1 242 63.2
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.0e-72 277.7 246 55.3
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 6.1e-65 251.9 154 79.9
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 6.6e-51 205.3 285 40.7
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.7e-49 199.1 298 38.6
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.3e-43 181.0 166 54.2
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 3.0e-43 179.9 202 49.0
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 6.6e-43 178.7 101 84.2
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 2.9e-38 163.3 196 49.0
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.1e-32 144.8 84 79.8
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 6.9e-32 142.1 84 79.8
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.8e-24 117.5 234 30.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 6.4e-22 109.0 147 40.1
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 5.4e-21 105.9 70 75.7
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 1.6e-20 104.4 82 63.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.6e-20 104.4 87 60.9
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 1.3e-19 101.3 63 76.2
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.1e-18 98.2 161 39.1
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 3.7e-17 93.2 86 55.8
RcHm_v2.0_Chr5g0051541 Rosa chinensis HOM05D004556 ORTHO05D005298 9.9e-15 85.1 121 43.0
BcaB04g19294 Brassica carinata HOM05D004556 ORTHO05D005298 1.8e-08 64.3 53 64.2
Lj9A668T37 Lonicera japonica HOM05D004556 ORTHO05D005298 3.4e-07 60.1 36 77.8
Sp1g08890 Schrenkiella parvula HOM05D000111 ORTHO05D013786 3.4e-07 60.1 63 57.1
RcHm_v2.0_Chr7g0229041 Rosa chinensis HOM05D004556 ORTHO05D005298 1.3e-06 58.2 69 46.4


User provided reference genes

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