Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.108 Capsicum annuum HOM05D005479 ORTHO05D007756 0.0e+00 1455.7 726 100.0
Sopen01g041110 Solanum pennellii HOM05D005479 ORTHO05D007756 0.0e+00 1312.7 726 90.2
Solyc01g097440.3 Solanum lycopersicum HOM05D005479 ORTHO05D007756 0.0e+00 1308.9 726 90.1
Peaxi162Scf00282g00225 Petunia axillaris HOM05D005479 ORTHO05D007756 0.0e+00 1150.2 722 81.4
Cc02_g31990 Coffea canephora HOM05D005479 ORTHO05D007756 0.0e+00 1078.5 725 73.5
CSS0032146 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.2e-308 1062.8 725 70.6
SalBow4G0205 Salvia bowleyana HOM05D005479 ORTHO05D007756 2.1e-308 1062.0 726 72.0
SalBow4G0458 Salvia bowleyana HOM05D005479 ORTHO05D007756 4.3e-306 1054.3 730 71.5
Migut.N01906 Erythranthe guttata HOM05D005479 ORTHO05D007756 5.3e-304 1047.3 722 71.2
Dinv20863 Davidia involucrata HOM05D005479 ORTHO05D007756 2.3e-299 1031.9 701 72.2
SGA_v2.0_scaffold81G26086 Striga asiatica HOM05D005479 ORTHO05D007756 8.7e-299 1030.0 790 65.7
Actinidia05775 Actinidia chinensis HOM05D005479 ORTHO05D007756 3.6e-297 1024.6 727 68.8
GSVIVG01021825001 Vitis vinifera HOM05D005479 ORTHO05D007756 2.1e-292 1008.8 728 69.0
Rhsim07G0075700 Rhododendron simsii HOM05D005479 ORTHO05D007756 6.0e-292 1007.3 726 68.3
Nitab4.5_0004469g0060 Nicotiana tabacum HOM05D005479 ORTHO05D007756 3.3e-290 1001.5 618 83.8
TAR624G0950 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.6e-284 982.6 729 66.7
COL.COLO4_15310 Corchorus olitorius HOM05D005479 ORTHO05D007756 9.6e-282 973.4 740 64.5
Gorai.007G283500 Gossypium raimondii HOM05D005479 ORTHO05D007756 6.2e-281 970.7 734 65.3
Gohir.D11G263500 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.1e-280 969.9 734 65.1
Manes.08G133100 Manihot esculenta HOM05D005479 ORTHO05D007756 1.1e-280 969.9 732 65.7
Thecc.05G286400 Theobroma cacao HOM05D005479 ORTHO05D007756 1.2e-279 966.5 739 64.7
TWI74G0680 Tripterygium wilfordii HOM05D005479 ORTHO05D007756 1.7e-278 962.6 730 65.3
Sabra13G0037000 Salix brachista HOM05D005479 ORTHO05D007756 1.1e-277 959.9 769 62.2
Atru.chr2.800 Acer truncatum HOM05D005479 ORTHO05D007756 1.4e-277 959.5 730 65.2
Gohir.A11G253600 Gossypium hirsutum HOM05D005479 ORTHO05D007756 1.9e-277 959.1 735 64.4
DCAR_029737 Daucus carota HOM05D005479 ORTHO05D007756 4.2e-277 958.0 723 64.2
MD12G1238800 Malus domestica HOM05D005479 ORTHO05D007756 4.6e-276 954.5 727 65.3
Ciclev10000348m.g Citrus clementina HOM05D005479 ORTHO05D007756 2.3e-275 952.2 722 64.8
HanXRQChr09g0254821 Helianthus annuus HOM05D005479 ORTHO05D007756 2.3e-275 952.2 727 65.3
FAN05G1441 Fragaria x ananassa HOM05D005479 ORTHO05D007756 6.7e-275 950.7 727 64.6
FvH4_6g03130 Fragaria vesca HOM05D005479 ORTHO05D007756 8.7e-275 950.3 727 64.5
FAN05G3323 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.5e-274 949.5 727 64.6
CiPaw.07G065500 Carya illinoinensis HOM05D005479 ORTHO05D007756 1.9e-274 949.1 731 64.7
RcHm_v2.0_Chr3g0451381 Rosa chinensis HOM05D005479 ORTHO05D007756 3.3e-274 948.3 727 65.5
FAN14G5841 Fragaria x ananassa HOM05D005479 ORTHO05D007756 1.6e-273 946.0 727 64.4
QL03p025023 Quercus lobata HOM05D005479 ORTHO05D007756 2.2e-273 945.7 731 64.2
Cpa.g.sc117.80 Carica papaya HOM05D005479 ORTHO05D007756 6.3e-273 944.1 730 63.4
Potri.013G039600 Populus trichocarpa HOM05D005479 ORTHO05D007756 2.4e-272 942.2 765 61.0
ECA232G3664 Erigeron canadensis HOM05D005479 ORTHO05D007756 3.4e-271 938.3 702 66.0
Sc09g0003880 Simmondsia chinensis HOM05D005479 ORTHO05D007756 7.4e-266 920.6 727 62.0
AL8G23370 Arabidopsis lyrata HOM05D005479 ORTHO05D007756 1.3e-265 919.8 725 62.6
Aqoxy1G01374 Aquilegia oxysepala HOM05D005479 ORTHO05D007756 2.8e-265 918.7 744 60.9
Glyma.19G243900 Glycine max HOM05D005479 ORTHO05D007756 4.8e-265 917.9 725 62.2
Lj1g0002084 Lotus japonicus HOM05D005479 ORTHO05D007756 8.2e-265 917.1 723 62.7
TPR.G7013 Trifolium pratense HOM05D005479 ORTHO05D007756 3.1e-264 915.2 727 61.9
EL10Ac4g09118 Beta vulgaris HOM05D005479 ORTHO05D007756 6.9e-264 914.1 729 62.0
Duzib177G1118 Durio zibethinus HOM05D005479 ORTHO05D007756 2.6e-263 912.1 740 61.4
Medtr7g114940 Medicago truncatula HOM05D005479 ORTHO05D007756 3.4e-263 911.8 725 61.8
VMungo0540G0884 Vigna mungo HOM05D005479 ORTHO05D007756 2.2e-262 909.1 727 62.3
Ca_09415_v3 Cicer arietinum L. HOM05D005479 ORTHO05D007756 6.5e-262 907.5 723 61.8
arahy.Tifrunner.gnm1.ann1.9C3ED3 Arachis hypogaea HOM05D005479 ORTHO05D007756 8.5e-262 907.1 725 61.4
Carub.0008s0944 Capsella rubella HOM05D005479 ORTHO05D007756 8.5e-262 907.1 727 61.5
Nn7g38390 Nelumbo nucifera HOM05D005479 ORTHO05D007756 8.5e-262 907.1 726 62.0
Psat3g007760 Pisum sativum HOM05D005479 ORTHO05D007756 8.5e-262 907.1 723 61.8
arahy.Tifrunner.gnm1.ann1.A0PUBP Arachis hypogaea HOM05D005479 ORTHO05D007756 2.5e-261 905.6 725 61.2
AT5G49570 Arabidopsis thaliana HOM05D005479 ORTHO05D007756 7.2e-261 904.0 723 61.4
Eucgr.H04378 Eucalyptus grandis HOM05D005479 ORTHO05D007756 2.1e-260 902.5 729 61.5
CANSAT54G0735 Cannabis sativa HOM05D005479 ORTHO05D007756 3.6e-260 901.7 725 61.7
C07p39970 Brassica napus HOM05D005479 ORTHO05D007756 4.7e-260 901.4 729 61.3
Phvul.006G100800 Phaseolus vulgaris HOM05D005479 ORTHO05D007756 6.1e-260 901.0 735 61.0
BolC7t44530H Brassica oleracea HOM05D005479 ORTHO05D007756 2.3e-259 899.0 730 61.2
CARHR287990 Cardamine hirsuta HOM05D005479 ORTHO05D007756 5.1e-259 897.9 723 61.4
Aa31LG11G8350 Aethionema arabicum HOM05D005479 ORTHO05D007756 3.3e-258 895.2 732 60.4
Thhalv10003714m.g Eutrema salsugineum HOM05D005479 ORTHO05D007756 3.3e-258 895.2 729 61.2
PSO541G1403 Papaver somniferum HOM05D005479 ORTHO05D007756 1.2e-255 886.7 726 60.3
THA.LOC104818635 Tarenaya hassleriana HOM05D005479 ORTHO05D007756 2.0e-255 885.9 729 59.8
Sp2g19870 Schrenkiella parvula HOM05D005479 ORTHO05D007756 2.6e-255 885.6 727 60.5
Lalb_Chr15g0076821 Lupinus albus HOM05D005479 ORTHO05D007756 6.5e-254 880.9 723 61.1
Eucgr.H04377 Eucalyptus grandis HOM05D005479 ORTHO05D007756 5.5e-253 877.9 731 59.8
Nitab4.5_0005582g0050 Nicotiana tabacum HOM05D005479 ORTHO05D007756 2.6e-247 859.0 528 83.5
PGR004G2522 Punica granatum HOM05D005479 ORTHO05D007756 6.1e-244 847.8 679 61.7
BraA06t26741Z Brassica rapa HOM05D005479 ORTHO05D007756 9.8e-242 840.5 708 58.8
Lsat_1_v5_gn_4_140660 Lactuca sativa HOM05D005479 ORTHO05D007756 9.8e-242 840.5 728 59.3
unitig_21.g20055 Utricularia gibba HOM05D005479 ORTHO05D007756 8.3e-241 837.4 722 58.2
A06p38260 Brassica napus HOM05D005479 ORTHO05D007756 1.2e-239 833.6 707 58.4
Glyma.03G246500 Glycine max HOM05D005479 ORTHO05D007756 1.9e-237 826.2 653 62.3
PSO675G4284 Papaver somniferum HOM05D005479 ORTHO05D007756 7.5e-234 814.3 726 56.6
Lj7A489G24 Lonicera japonica HOM05D005479 ORTHO05D007756 1.2e-231 807.0 637 63.4
AUR62004929 Chenopodium quinoa HOM05D005479 ORTHO05D007756 2.0e-226 789.6 752 54.5
vmacro13830 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 3.4e-226 788.9 820 53.5
ATR0763G186 Amborella trichopoda HOM05D005479 ORTHO05D007756 5.4e-224 781.6 703 55.9
MELO3C004372.2 Cucumis melo HOM05D005479 ORTHO05D007756 1.8e-219 766.5 609 60.8
Hund22122 Selenicereus undatus HOM05D005479 ORTHO05D007756 8.9e-219 764.2 731 54.9
SEGI_17604 Sequoiadendron giganteum HOM05D005479 ORTHO05D007756 2.2e-217 759.6 727 53.9
CsaV3_2G004220 Cucumis sativus L. HOM05D005479 ORTHO05D007756 1.9e-216 756.5 605 60.5
Haze_04347 Corylus avellana HOM05D005479 ORTHO05D007756 2.0e-215 753.1 673 57.9
Sed0025675 Sechium edule HOM05D005479 ORTHO05D007756 2.7e-215 752.7 607 60.3
Hma1.2p1_0083F.1_g042820 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 1.3e-209 733.8 495 70.1
Ah.06g192270 Amaranthus hybridus HOM05D005479 ORTHO05D007756 2.4e-208 729.6 764 52.0
Prupe.6G341700 Prunus persica HOM05D005479 ORTHO05D007756 1.7e-206 723.4 620 59.5
Hma1.2p1_0083F.1_g042810 Hydrangea macrophylla HOM05D005479 ORTHO05D007756 8.9e-195 684.5 456 70.6
PGSC0003DMG400019450 Solanum tuberosum HOM05D005479 ORTHO05D007756 4.9e-193 678.7 383 90.6
CDE11G1080 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 1.9e-192 676.8 619 54.0
Cfa006446 Carpinus fangiana HOM05D005479 ORTHO05D007756 7.8e-191 671.4 500 64.4
AUR62001022 Chenopodium quinoa HOM05D005479 ORTHO05D007756 7.8e-191 671.4 732 49.9
ClCG02G016550 Citrullus lanatus HOM05D005479 ORTHO05D007756 3.3e-189 666.0 637 53.8
SHI18393 Sapria himalayana HOM05D005479 ORTHO05D007756 1.3e-188 664.1 631 55.5
TAR624G1307 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.4e-179 634.0 454 65.9
Zm00001eb105420 Zea mays HOM05D005479 ORTHO05D007756 3.0e-166 589.7 736 45.4
Mapoly0021s0092 Marchantia polymorpha HOM05D005479 ORTHO05D007756 2.7e-151 540.0 602 47.5
Pp3c4_6120 Physcomitrium patens HOM05D005479 ORTHO05D007756 2.3e-150 537.0 742 41.1
Prupe.6G342000 Prunus persica HOM05D005479 ORTHO05D007756 2.2e-148 530.4 415 63.4
SMO367G0213 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 6.7e-134 482.3 590 43.6
Os07g0497400 Oryza sativa ssp. japonica HOM05D005479 ORTHO05D007756 9.7e-133 478.4 446 54.3
vmacro23344 Vaccinium macrocarpon HOM05D005479 ORTHO05D007756 1.2e-130 471.5 635 44.4
Oeu040763.1 Olea europaea HOM05D005479 ORTHO05D007756 1.7e-129 467.6 346 66.8
CBR_g7957 Chara braunii HOM05D005479 ORTHO05D007756 1.2e-127 461.5 836 35.8
SMO367G0055 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 8.0e-111 405.6 554 40.6
SMO367G1212 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.4e-107 394.8 483 43.1
Eucgr.H04379 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.4e-101 373.2 289 60.9
SMO367G0934 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 2.0e-98 364.4 473 42.7
TAR624G0794 Trochodendron aralioides HOM05D005479 ORTHO05D007756 8.1e-87 325.9 225 66.7
FAN02G1208 Fragaria x ananassa HOM05D000352 ORTHO05D000260 2.5e-72 277.7 229 64.2
CSS0033581 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.9e-59 235.0 185 62.2
FAN09G3553 Fragaria x ananassa HOM05D005479 ORTHO05D007756 5.1e-57 226.9 125 75.2
Cre01.g053900 Chlamydomonas reinhardtii HOM05D005479 ORTHO05D007756 7.4e-56 223.0 669 29.6
MCO12G063 Micromonas commoda HOM05D005479 ORTHO05D007756 1.6e-55 221.9 255 45.5
PRCOL_00003670 Prasinoderma coloniale HOM05D005479 ORTHO05D007756 1.2e-53 215.7 318 40.3
TAR624G0703 Trochodendron aralioides HOM05D005479 ORTHO05D007756 1.3e-49 202.2 144 68.8
TAR624G0835 Trochodendron aralioides HOM05D005479 ORTHO05D007756 3.7e-47 194.1 193 56.0
CSS0018477 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 4.1e-46 190.7 126 69.0
Cfa027061 Carpinus fangiana HOM05D005479 ORTHO05D007756 7.6e-45 186.4 261 36.8
CSS0047105 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.6e-42 178.7 126 66.7
SMO343G0028 Selaginella moellendorffii HOM05D005479 ORTHO05D007756 1.8e-33 148.7 114 55.3
CDE11G0281 Ceratophyllum demersum HOM05D005479 ORTHO05D007756 2.3e-33 148.3 104 68.3
Nitab4.5_0005582g0060 Nicotiana tabacum HOM05D005479 ORTHO05D019704 1.5e-32 145.6 83 88.0
Eucgr.L03382 Eucalyptus grandis HOM05D005479 ORTHO05D007756 4.4e-32 144.1 104 66.3
CSS0025893 Camellia sinensis var. sinensis HOM05D005479 ORTHO05D007756 1.9e-27 128.6 169 43.8
CSS0023004 Camellia sinensis var. sinensis HOM05D002732 ORTHO05D002955 9.4e-27 126.3 130 49.2
VMungo0464G1033 Vigna mungo HOM05D000010 ORTHO05D000063 1.0e-17 96.3 81 56.8
VMungo1383G0330 Vigna mungo HOM05D005479 ORTHO05D019704 9.7e-16 89.7 107 48.6
Cpa.g.sc117.79 Carica papaya HOM05D005479 ORTHO05D118266 1.8e-14 85.5 317 28.7
Cc02_g31940 Coffea canephora HOM05D005479 ORTHO05D007756 7.7e-13 80.1 59 61.0
BraA09t36127Z Brassica rapa HOM05D006288 ORTHO05D007416 2.9e-12 78.2 61 57.4
Glyma.16G136532 Glycine max HOM05D005479 ORTHO05D019704 1.5e-11 75.9 86 54.7
Gorai.007G282800 Gossypium raimondii HOM05D005479 ORTHO05D019704 4.7e-10 70.9 44 70.5
AL468U10010 Arabidopsis lyrata HOM05D005479 ORTHO05D019704 4.0e-09 67.8 44 65.9
arahy.Tifrunner.gnm1.ann1.1SX7LU Arachis hypogaea HOM05D005479 ORTHO05D019704 9.8e-08 63.2 72 47.2
VMungo1309G2527 Vigna mungo HOM05D002246 ORTHO05D002308 9.8e-08 63.2 88 45.5
BolC9t53455H Brassica oleracea HOM05D005479 ORTHO05D007416 3.1e-06 58.2 50 54.0
C09p05280 Brassica napus HOM05D006288 ORTHO05D007416 5.4e-06 57.4 46 58.7


User provided reference genes

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