Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G134.10 Capsicum annuum HOM05D002974 ORTHO05D002992 5.8e-81 304.3 168 100.0
Sopen01g040240 Solanum pennellii HOM05D002974 ORTHO05D002992 1.2e-46 190.3 163 70.6
Solyc01g096510.2 Solanum lycopersicum HOM05D002974 ORTHO05D002992 1.0e-45 187.2 163 69.3
PGSC0003DMG400005401 Solanum tuberosum HOM05D002974 ORTHO05D002992 9.1e-42 174.1 162 66.0
Nitab4.5_0003481g0110 Nicotiana tabacum HOM05D002974 ORTHO05D002992 4.4e-36 155.2 163 67.5
Nitab4.5_0005808g0010 Nicotiana tabacum HOM05D002974 ORTHO05D002992 5.0e-32 141.7 174 56.3
Oeu053079.1 Olea europaea HOM05D002974 ORTHO05D002992 7.7e-17 91.3 161 40.4
Oeu006786.1 Olea europaea HOM05D002974 ORTHO05D002992 1.3e-16 90.5 151 41.1
Peaxi162Scf00082g00006 Petunia axillaris HOM05D002974 ORTHO05D002992 2.3e-16 89.7 90 62.2
Dinv32015 Davidia involucrata HOM05D002974 ORTHO05D002992 5.0e-16 88.6 166 41.0
Oeu064130.1 Olea europaea HOM05D002974 ORTHO05D002992 1.1e-15 87.4 153 41.2
MSTRG.28034 Avicennia marina HOM05D002974 ORTHO05D002992 1.9e-15 86.7 155 41.3
Rhsim07G0068200 Rhododendron simsii HOM05D002974 ORTHO05D002992 2.1e-14 83.2 137 43.1
Dinv44699 Davidia involucrata HOM05D002974 ORTHO05D002992 1.4e-13 80.5 179 38.0
Oeu011571.1 Olea europaea HOM05D002974 ORTHO05D002992 1.4e-13 80.5 154 36.4
SGA_v2.0_scaffold232G43495 Striga asiatica HOM05D002974 ORTHO05D002992 3.0e-13 79.3 169 36.7
Sc11g0006360 Simmondsia chinensis HOM05D002974 ORTHO05D002992 4.0e-13 79.0 90 52.2
Potri.001G029700 Populus trichocarpa HOM05D002974 ORTHO05D002992 5.2e-13 78.6 152 41.4
MSTRG.5073 Avicennia marina HOM05D002974 ORTHO05D002992 1.2e-12 77.4 157 38.2
Migut.N01854 Erythranthe guttata HOM05D002974 ORTHO05D002992 2.0e-12 76.6 158 37.3
Migut.B01240 Erythranthe guttata HOM05D002974 ORTHO05D002992 3.4e-12 75.9 152 42.1
PGR031G0048 Punica granatum HOM05D002974 ORTHO05D002992 2.2e-11 73.2 69 55.1
EL10Ac2g02772 Beta vulgaris HOM05D012416 ORTHO05D002992 2.9e-11 72.8 160 35.0
QL04p017813 Quercus lobata HOM05D002974 ORTHO05D002992 3.7e-11 72.4 70 60.0
QL04p018674 Quercus lobata HOM05D002974 ORTHO05D002992 3.7e-11 72.4 70 60.0
Potri.003G194700 Populus trichocarpa HOM05D002974 ORTHO05D002992 8.3e-11 71.2 139 38.1
FvH4_7g03520 Fragaria vesca HOM05D002974 ORTHO05D002992 1.4e-10 70.5 131 39.7
FAN06G3677 Fragaria x ananassa HOM05D002974 ORTHO05D002992 1.4e-10 70.5 131 39.7
THA.LOC109116532 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 1.4e-10 70.5 145 39.3
MELO3C012484.2 Cucumis melo HOM05D002974 ORTHO05D002992 1.8e-10 70.1 57 70.2
FAN01G3097 Fragaria x ananassa HOM05D002974 ORTHO05D002992 2.4e-10 69.7 70 60.0
FAN03G0828 Fragaria x ananassa HOM05D002974 ORTHO05D002992 3.2e-10 69.3 70 60.0
Manes.04G157400 Manihot esculenta HOM05D002974 ORTHO05D002992 3.2e-10 69.3 65 55.4
Sabra03G0145400 Salix brachista HOM05D002974 ORTHO05D002992 3.2e-10 69.3 151 38.4
SGA_v2.0_scaffold43G16289 Striga asiatica HOM05D002974 ORTHO05D002992 3.2e-10 69.3 146 34.9
Nn2g14777 Nelumbo nucifera HOM05D002974 ORTHO05D002992 4.1e-10 68.9 139 38.8
SalBow5G5227 Salvia bowleyana HOM05D002974 ORTHO05D002992 4.1e-10 68.9 49 67.3
CiPaw.13G015100 Carya illinoinensis HOM05D002974 ORTHO05D002992 5.4e-10 68.6 123 43.9
Manes.11G007000 Manihot esculenta HOM05D002974 ORTHO05D002992 5.4e-10 68.6 68 61.8
Sc10g0004500 Simmondsia chinensis HOM05D002974 ORTHO05D002992 5.4e-10 68.6 75 54.7
ClCG05G026910 Citrullus lanatus HOM05D002974 ORTHO05D002992 7.0e-10 68.2 60 65.0
FAN10G2850 Fragaria x ananassa HOM05D002974 ORTHO05D002992 7.0e-10 68.2 70 58.6
THA.LOC104820144 Tarenaya hassleriana HOM05D002974 ORTHO05D002992 7.0e-10 68.2 55 65.5
QL04p017793 Quercus lobata HOM05D002974 ORTHO05D002992 9.2e-10 67.8 86 47.7
COL.COLO4_20695 Corchorus olitorius HOM05D003550 ORTHO05D004336 1.6e-09 67.0 74 51.4
RcHm_v2.0_Chr1g0325821 Rosa chinensis HOM05D002974 ORTHO05D002992 1.6e-09 67.0 70 61.4
Ca_12961_v3 Cicer arietinum L. HOM05D002974 ORTHO05D002992 2.0e-09 66.6 63 58.7
TWI15G0153 Tripterygium wilfordii HOM05D002974 ORTHO05D002992 2.0e-09 66.6 65 58.5
Cfa010941 Carpinus fangiana HOM05D002974 ORTHO05D002992 2.7e-09 66.2 74 51.4
CiPaw.14G008700 Carya illinoinensis HOM05D002974 ORTHO05D002992 2.7e-09 66.2 93 49.5
Nn7g36749 Nelumbo nucifera HOM05D002974 ORTHO05D002992 2.7e-09 66.2 138 37.7
Sed0006618 Sechium edule HOM05D002974 ORTHO05D002992 2.7e-09 66.2 55 67.3
TAR623G1017 Trochodendron aralioides HOM05D002974 ORTHO05D002992 2.7e-09 66.2 148 39.2
unitig_26.g9507 Utricularia gibba HOM05D002974 ORTHO05D002992 2.7e-09 66.2 160 35.6
Aqoxy2G00396 Aquilegia oxysepala HOM05D002974 ORTHO05D002992 3.5e-09 65.9 40 87.5
Duzib114G0524 Durio zibethinus HOM05D002974 ORTHO05D002992 4.6e-09 65.5 68 55.9
CsaV3_5G036860 Cucumis sativus L. HOM05D002974 ORTHO05D002992 5.9e-09 65.1 56 67.9
Glyma.15G232200 Glycine max HOM05D002974 ORTHO05D002992 7.8e-09 64.7 73 49.3
Glyma.19G130400 Glycine max HOM05D002974 ORTHO05D002992 7.8e-09 64.7 160 36.9
Psat5g220360 Pisum sativum HOM05D002974 ORTHO05D002992 7.8e-09 64.7 79 53.2
Prupe.2G041200 Prunus persica HOM05D002974 ORTHO05D002992 7.8e-09 64.7 71 50.7
CANSAT56G2792 Cannabis sativa HOM05D002974 ORTHO05D002992 1.0e-08 64.3 55 65.5
Gohir.D04G016200 Gossypium hirsutum HOM05D002974 ORTHO05D002992 1.0e-08 64.3 70 55.7
Gorai.012G018900 Gossypium raimondii HOM05D002974 ORTHO05D002992 1.0e-08 64.3 70 55.7
Thecc.10G149600 Theobroma cacao HOM05D002974 ORTHO05D002992 1.0e-08 64.3 71 50.7
Duzib106G1811 Durio zibethinus HOM05D002974 ORTHO05D002992 1.3e-08 63.9 68 57.4
Lj3g0008937 Lotus japonicus HOM05D002974 ORTHO05D002992 3.0e-08 62.8 79 45.6
Lalb_Chr19g0133001 Lupinus albus HOM05D002974 ORTHO05D002992 3.0e-08 62.8 51 64.7
AUR62032633 Chenopodium quinoa HOM05D012416 ORTHO05D002992 3.9e-08 62.4 163 30.7
Ciclev10002803m.g Citrus clementina HOM05D002974 ORTHO05D002992 3.9e-08 62.4 159 35.8
Medtr3g013980 Medicago truncatula HOM05D002974 ORTHO05D002992 3.9e-08 62.4 84 45.2
Atru.chr12.1277 Acer truncatum HOM05D002974 ORTHO05D002992 5.0e-08 62.0 158 34.8
Gohir.D10G194600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 5.0e-08 62.0 48 64.6
Gorai.011G217100 Gossypium raimondii HOM05D002974 ORTHO05D002992 5.0e-08 62.0 48 64.6
Ah.10g030130 Amaranthus hybridus HOM05D002974 ORTHO05D002992 6.6e-08 61.6 56 60.7
Cc06_g19310 Coffea canephora HOM05D002974 ORTHO05D002992 6.6e-08 61.6 55 63.6
Sed0000723 Sechium edule HOM05D002974 ORTHO05D002992 6.6e-08 61.6 51 66.7
VMungo1080G0254 Vigna mungo HOM05D002974 ORTHO05D002992 6.6e-08 61.6 60 58.3
AUR62031748 Chenopodium quinoa HOM05D012416 ORTHO05D006373 8.6e-08 61.2 61 55.7
Phvul.005G024800 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 8.6e-08 61.2 60 61.7
Prupe.7G038200 Prunus persica HOM05D002974 ORTHO05D002992 8.6e-08 61.2 50 64.0
TPR.G22516 Trifolium pratense HOM05D002974 ORTHO05D002992 8.6e-08 61.2 53 62.3
ECA234G2872 Erigeron canadensis HOM05D002974 ORTHO05D002992 1.1e-07 60.8 58 58.6
DCAR_013643 Daucus carota HOM05D002974 ORTHO05D002992 1.5e-07 60.5 39 76.9
Glyma.03G127800 Glycine max HOM05D002974 ORTHO05D002992 1.5e-07 60.5 157 36.3
DCAR_025326 Daucus carota HOM05D002974 ORTHO05D002992 1.9e-07 60.1 60 55.0
Eucgr.G03218 Eucalyptus grandis HOM05D002974 ORTHO05D002992 1.9e-07 60.1 72 48.6
SalBow6G5116 Salvia bowleyana HOM05D002974 ORTHO05D002992 1.9e-07 60.1 132 35.6
TPR.G31150 Trifolium pratense HOM05D002974 ORTHO05D002992 1.9e-07 60.1 142 36.6
Duzib106G0159 Durio zibethinus HOM05D002974 ORTHO05D002992 2.5e-07 59.7 62 54.8
Gohir.A05G399600 Gossypium hirsutum HOM05D002974 ORTHO05D002992 2.5e-07 59.7 70 52.9
Medtr8g040080 Medicago truncatula HOM05D002974 ORTHO05D002992 2.5e-07 59.7 51 60.8
Psat4g145360 Pisum sativum HOM05D002974 ORTHO05D002992 2.5e-07 59.7 53 60.4
Gohir.A10G187100 Gossypium hirsutum HOM05D002974 ORTHO05D002992 3.3e-07 59.3 48 60.4
Glyma.13G193800 Glycine max HOM05D002974 ORTHO05D002992 4.3e-07 58.9 74 47.3
RcHm_v2.0_Chr2g0125651 Rosa chinensis HOM05D002974 ORTHO05D002992 4.3e-07 58.9 71 49.3
AUR62026884 Chenopodium quinoa HOM05D012416 ORTHO05D002992 5.6e-07 58.5 169 38.5
AUR62044059 Chenopodium quinoa HOM05D012416 ORTHO05D006373 5.6e-07 58.5 169 38.5
Glyma.04G134200 Glycine max HOM05D002974 ORTHO05D002992 5.6e-07 58.5 71 50.7
Oeu059346.1 Olea europaea HOM05D002974 ORTHO05D002992 5.6e-07 58.5 86 48.8
Cfa020005 Carpinus fangiana HOM05D002974 ORTHO05D002992 7.3e-07 58.2 40 75.0
Haze_20227 Corylus avellana HOM05D002974 ORTHO05D002992 7.3e-07 58.2 40 75.0
Lalb_Chr06g0173671 Lupinus albus HOM05D002974 ORTHO05D002992 7.3e-07 58.2 74 47.3
Lj3g0024515 Lotus japonicus HOM05D002974 ORTHO05D002992 9.5e-07 57.8 48 58.3
Phvul.001G123400 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 1.2e-06 57.4 142 34.5
Actinidia01827 Actinidia chinensis HOM05D002974 ORTHO05D002992 1.6e-06 57.0 130 33.8
Thecc.05G134100 Theobroma cacao HOM05D002974 ORTHO05D002992 1.6e-06 57.0 146 32.9
Atru.chr1.1439 Acer truncatum HOM05D002974 ORTHO05D002992 2.1e-06 56.6 153 32.7
MD14G1088500 Malus domestica HOM05D002974 ORTHO05D002992 2.1e-06 56.6 51 64.7
VMungo1383G0235 Vigna mungo HOM05D002974 ORTHO05D002992 2.1e-06 56.6 143 37.1
Phvul.011G203450 Phaseolus vulgaris HOM05D002974 ORTHO05D002992 2.8e-06 56.2 77 45.5
Potri.016G036600 Populus trichocarpa HOM05D002974 ORTHO05D002992 2.8e-06 56.2 129 34.1
Sed0014788 Sechium edule HOM05D002974 ORTHO05D002992 2.8e-06 56.2 49 63.3
arahy.Tifrunner.gnm1.ann1.C03B5F Arachis hypogaea HOM05D002974 ORTHO05D002992 3.6e-06 55.8 33 78.8
Nitab4.5_0000812g0090 Nicotiana tabacum HOM05D015198 ORTHO05D002992 3.6e-06 55.8 55 56.4
QL07p010402 Quercus lobata HOM05D002974 ORTHO05D002992 3.6e-06 55.8 167 39.5
TAR633G1036 Trochodendron aralioides HOM05D002974 ORTHO05D002992 3.6e-06 55.8 82 46.3
PSO384G2085 Papaver somniferum HOM05D002974 ORTHO05D002992 4.7e-06 55.5 141 31.9
Sabra16G0038800 Salix brachista HOM05D002974 ORTHO05D002992 4.7e-06 55.5 124 33.9
CANSAT64G2862 Cannabis sativa HOM05D002974 ORTHO05D002992 6.2e-06 55.1 58 55.2
CiPaw.09G047800 Carya illinoinensis HOM05D002974 ORTHO05D002992 6.2e-06 55.1 39 74.4
PSO339G5722 Papaver somniferum HOM05D002974 ORTHO05D002992 6.2e-06 55.1 51 62.7
CSS0033077 Camellia sinensis var. sinensis HOM05D002974 ORTHO05D002992 8.0e-06 54.7 137 38.0
MELO3C019076.2 Cucumis melo HOM05D002974 ORTHO05D002992 8.0e-06 54.7 49 63.3
Eucgr.A02242 Eucalyptus grandis HOM05D002974 ORTHO05D002992 8.0e-06 54.7 50 54.0


User provided reference genes

Program Settings