Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1334.2 Capsicum annuum HOM05D005313 ORTHO05D006317 1.7e-157 559.3 291 100.0
Solyc05g008180.3 Solanum lycopersicum HOM05D005313 ORTHO05D006317 3.5e-150 535.0 287 95.8
Sopen05g004020 Solanum pennellii HOM05D005313 ORTHO05D006317 4.6e-150 534.6 287 95.8
PGSC0003DMG400030501 Solanum tuberosum HOM05D005313 ORTHO05D006317 2.3e-149 532.3 287 95.5
Nitab4.5_0000742g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 1.5e-145 519.6 289 91.0
Peaxi162Scf00450g00614 Petunia axillaris HOM05D005313 ORTHO05D006317 5.8e-145 517.7 287 93.0
Peaxi162Scf00159g00112 Petunia axillaris HOM05D005313 ORTHO05D006317 9.9e-145 516.9 287 93.0
PSO384G2037 Papaver somniferum HOM05D005313 ORTHO05D006317 1.9e-135 486.1 287 86.1
SalBow4G0219 Salvia bowleyana HOM05D005313 ORTHO05D006317 2.4e-135 485.7 287 86.8
Cc11_g08770 Coffea canephora HOM05D005313 ORTHO05D006317 5.4e-135 484.6 287 85.0
vmacro10642 Vaccinium macrocarpon HOM05D005313 ORTHO05D006317 1.0e-133 480.3 287 86.1
Lj6A747T68 Lonicera japonica HOM05D005313 ORTHO05D006317 1.3e-133 479.9 287 85.4
GSVIVG01011763001 Vitis vinifera HOM05D005313 ORTHO05D006317 3.0e-133 478.8 287 85.7
CSS0048776 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 5.1e-133 478.0 287 85.0
MSTRG.895 Avicennia marina HOM05D005313 ORTHO05D006317 6.7e-133 477.6 287 84.3
TAR623G0220 Trochodendron aralioides HOM05D005313 ORTHO05D006317 6.7e-133 477.6 287 84.0
Oeu024584.1 Olea europaea HOM05D005313 ORTHO05D006317 8.7e-133 477.2 305 80.7
PSO339G3364 Papaver somniferum HOM05D005313 ORTHO05D006317 1.1e-132 476.9 287 85.0
COL.COLO4_20475 Corchorus olitorius HOM05D005313 ORTHO05D006317 5.6e-132 474.6 287 84.0
Rhsim02G0199800 Rhododendron simsii HOM05D005313 ORTHO05D006317 5.6e-132 474.6 287 84.3
Gorai.002G179900 Gossypium raimondii HOM05D005313 ORTHO05D006317 1.6e-131 473.0 289 83.7
Phvul.003G023500 Phaseolus vulgaris HOM05D005313 ORTHO05D006317 1.6e-131 473.0 287 84.3
Cfa008602 Carpinus fangiana HOM05D005313 ORTHO05D006317 2.8e-131 472.2 287 84.7
Gohir.A01G152800 Gossypium hirsutum HOM05D005313 ORTHO05D006317 3.7e-131 471.9 289 83.4
HanXRQChr15g0488661 Helianthus annuus HOM05D005313 ORTHO05D006317 3.7e-131 471.9 287 83.6
Glyma.09G118600 Glycine max HOM05D005313 ORTHO05D006317 6.2e-131 471.1 287 83.6
Medtr1g030750 Medicago truncatula HOM05D005313 ORTHO05D006317 1.4e-130 469.9 287 83.6
Thecc.02G280500 Theobroma cacao HOM05D005313 ORTHO05D006317 1.4e-130 469.9 287 83.3
Glyma.02G238100 Glycine max HOM05D005313 ORTHO05D006317 1.8e-130 469.5 287 83.6
Thhalv10000908m.g Eutrema salsugineum HOM05D005313 ORTHO05D006317 2.4e-130 469.2 289 83.0
Potri.008G128900 Populus trichocarpa HOM05D005313 ORTHO05D006317 2.4e-130 469.2 287 84.3
AL5G10310 Arabidopsis lyrata HOM05D005313 ORTHO05D006317 4.0e-130 468.4 289 82.7
BcaB07g30404 Brassica carinata HOM05D005313 ORTHO05D006317 5.3e-130 468.0 289 82.7
TWI31G1405 Tripterygium wilfordii HOM05D005313 ORTHO05D006317 5.3e-130 468.0 287 82.6
AT2G01350 Arabidopsis thaliana HOM05D005313 ORTHO05D006317 6.9e-130 467.6 289 82.7
ECA246G2448 Erigeron canadensis HOM05D005313 ORTHO05D006317 6.9e-130 467.6 287 82.2
Psat6g042560 Pisum sativum HOM05D005313 ORTHO05D006317 6.9e-130 467.6 287 83.3
Gohir.D01G145600 Gossypium hirsutum HOM05D005313 ORTHO05D006317 9.0e-130 467.2 289 82.4
Lj2g0003652 Lotus japonicus HOM05D005313 ORTHO05D006317 9.0e-130 467.2 287 82.9
Atru.chr9.122 Acer truncatum HOM05D005313 ORTHO05D006317 1.2e-129 466.8 287 82.2
CARHR143870 Cardamine hirsuta HOM05D005313 ORTHO05D006317 1.2e-129 466.8 289 82.0
Aa31LG2G8560 Aethionema arabicum HOM05D005313 ORTHO05D006317 1.5e-129 466.5 287 83.3
Carub.0005s0033 Capsella rubella HOM05D005313 ORTHO05D006317 1.5e-129 466.5 289 82.7
VMungo1215G0481 Vigna mungo HOM05D005313 ORTHO05D006317 1.5e-129 466.5 287 82.6
AUR62017725 Chenopodium quinoa HOM05D005313 ORTHO05D006317 2.0e-129 466.1 287 84.0
RcHm_v2.0_Chr4g0441121 Rosa chinensis HOM05D005313 ORTHO05D006317 2.0e-129 466.1 287 83.3
THA.LOC104805057 Tarenaya hassleriana HOM05D005313 ORTHO05D006317 2.0e-129 466.1 287 83.6
Eucgr.G02191 Eucalyptus grandis HOM05D005313 ORTHO05D006317 4.5e-129 464.9 287 82.6
Lalb_Chr17g0338641 Lupinus albus HOM05D005313 ORTHO05D006317 4.5e-129 464.9 287 81.9
Sp2g12800 Schrenkiella parvula HOM05D005313 ORTHO05D006317 4.5e-129 464.9 289 82.4
QL01p001863 Quercus lobata HOM05D005313 ORTHO05D006317 7.6e-129 464.2 286 82.9
MD16G1029000 Malus domestica HOM05D005313 ORTHO05D006317 9.9e-129 463.8 287 82.9
C02p49400 Brassica napus HOM05D005313 ORTHO05D006317 1.7e-128 463.0 289 82.4
FvH4_4g32330 Fragaria vesca HOM05D005313 ORTHO05D006317 1.7e-128 463.0 287 82.6
Manes.17G006600 Manihot esculenta HOM05D005313 ORTHO05D006317 3.8e-128 461.8 287 82.6
PGR119G0894 Punica granatum HOM05D005313 ORTHO05D006317 4.9e-128 461.5 289 82.0
BolC2t11026H Brassica oleracea HOM05D005313 ORTHO05D006317 8.4e-128 460.7 289 82.0
Lsat_1_v5_gn_3_54641 Lactuca sativa HOM05D005313 ORTHO05D006317 8.4e-128 460.7 287 81.9
A02p31910 Brassica napus HOM05D005313 ORTHO05D006317 1.9e-127 459.5 289 81.7
BraA02t08201Z Brassica rapa HOM05D005313 ORTHO05D006317 1.9e-127 459.5 289 81.7
BcaC03g17029 Brassica carinata HOM05D005313 ORTHO05D006317 2.5e-127 459.1 289 81.7
Hund08629 Selenicereus undatus HOM05D005313 ORTHO05D006317 3.2e-127 458.8 287 81.9
Prupe.1G323900 Prunus persica HOM05D005313 ORTHO05D006317 4.2e-127 458.4 287 81.9
CANSAT01G3269 Cannabis sativa HOM05D005313 ORTHO05D006317 5.5e-127 458.0 287 81.5
MELO3C018332.2 Cucumis melo HOM05D005313 ORTHO05D006317 9.3e-127 457.2 287 80.8
EL10Ac7g15995 Beta vulgaris HOM05D005313 ORTHO05D006317 2.1e-126 456.1 287 82.6
FAN17G2517 Fragaria x ananassa HOM05D005313 ORTHO05D006317 2.1e-126 456.1 294 80.6
CsaV3_5G013570 Cucumis sativus L. HOM05D005313 ORTHO05D006317 6.0e-126 454.5 287 80.1
Aqoxy1G00025 Aquilegia oxysepala HOM05D005313 ORTHO05D006317 7.9e-126 454.1 287 80.1
CDE05G1915 Ceratophyllum demersum HOM05D005313 ORTHO05D006317 7.9e-126 454.1 287 79.8
Sc14g0007170 Simmondsia chinensis HOM05D005313 ORTHO05D006317 3.9e-125 451.8 287 80.5
Sed0021241 Sechium edule HOM05D005313 ORTHO05D006317 6.7e-125 451.1 287 80.1
FAN22G0311 Fragaria x ananassa HOM05D005313 ORTHO05D006317 8.7e-125 450.7 294 79.6
Ca_25713_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.1e-123 446.0 321 73.5
FAN07G2253 Fragaria x ananassa HOM05D005313 ORTHO05D006317 1.4e-122 443.4 312 75.0
Os09g0553600 Oryza sativa ssp. japonica HOM05D005313 ORTHO05D006317 2.4e-122 442.6 287 77.0
AUR62032955 Chenopodium quinoa HOM05D005313 ORTHO05D006317 4.0e-122 441.8 329 73.3
Nitab4.5_0004816g0010 Nicotiana tabacum HOM05D005313 ORTHO05D006317 4.0e-122 441.8 242 93.8
Sabra08G0097700 Salix brachista HOM05D005313 ORTHO05D006317 1.0e-120 437.2 348 69.0
Zm00001eb104420 Zea mays HOM05D005313 ORTHO05D006317 4.9e-120 434.9 287 75.6
Ah.01g012630 Amaranthus hybridus HOM05D005313 ORTHO05D006317 4.2e-119 431.8 285 79.6
HPP92_025383 Vanilla planifolia HOM05D005313 ORTHO05D006317 5.5e-119 431.4 287 75.6
SGA_v2.0_scaffold50G18517 Striga asiatica HOM05D005313 ORTHO05D006317 3.5e-118 428.7 287 78.7
SalBow4G0808 Salvia bowleyana HOM05D005313 ORTHO05D006317 6.0e-118 427.9 254 85.4
Dinv17424 Davidia involucrata HOM05D005313 ORTHO05D006317 5.1e-117 424.9 254 83.5
Haze_11011 Corylus avellana HOM05D005313 ORTHO05D006317 6.9e-114 414.5 254 81.9
BcaC03g17031 Brassica carinata HOM05D005313 ORTHO05D006317 5.9e-113 411.4 289 76.1
Pp3c8_18030 Physcomitrium patens HOM05D005313 ORTHO05D006317 5.9e-113 411.4 287 70.7
Duzib248G1582 Durio zibethinus HOM05D005313 ORTHO05D006317 5.5e-111 404.8 289 73.7
Ciclev10018157m.g Citrus clementina HOM05D005313 ORTHO05D006317 1.8e-109 399.8 241 84.2
unitig_0.g2330 Utricularia gibba HOM05D005313 ORTHO05D006317 1.8e-109 399.8 287 73.5
Migut.L00987 Erythranthe guttata HOM05D005313 ORTHO05D006317 9.7e-108 394.0 232 83.2
Cpa.g.sc65.129 Carica papaya HOM05D005313 ORTHO05D006317 1.3e-107 393.7 287 73.2
FAN12G1743 Fragaria x ananassa HOM05D005313 ORTHO05D006317 7.7e-105 384.4 341 63.6
SMO164G0169 Selaginella moellendorffii HOM05D005313 ORTHO05D006317 1.1e-103 380.6 287 67.9
Duzib248G1474 Durio zibethinus HOM05D005313 ORTHO05D006317 1.8e-101 373.2 236 79.2
CiPaw.06G012200 Carya illinoinensis HOM05D005313 ORTHO05D006317 2.3e-101 372.9 247 76.9
SEGI_23840 Sequoiadendron giganteum HOM05D005313 ORTHO05D006317 2.0e-100 369.8 255 72.9
Nn2g15695 Nelumbo nucifera HOM05D005313 ORTHO05D006317 3.3e-100 369.0 287 69.7
Mapoly0011s0070 Marchantia polymorpha HOM05D005313 ORTHO05D006317 4.8e-99 365.2 272 66.9
CBR_g30917 Chara braunii HOM05D005313 ORTHO05D006317 4.5e-97 358.6 288 64.9
DCAR_023608 Daucus carota HOM05D005313 ORTHO05D006317 1.9e-95 353.2 221 81.4
arahy.Tifrunner.gnm1.ann1.Y1EHRK Arachis hypogaea HOM05D005313 ORTHO05D006317 1.8e-93 346.7 287 64.8
arahy.Tifrunner.gnm1.ann1.G5QWBZ Arachis hypogaea HOM05D005313 ORTHO05D006317 7.4e-92 341.3 296 63.2
AagrBONN_evm.TU.Sc2ySwM_117.3802 Anthoceros agrestis HOM05D005313 ORTHO05D006317 1.2e-81 307.4 230 66.1
MCO15G382 Micromonas commoda HOM05D005313 ORTHO05D006317 2.0e-81 306.6 279 59.5
ATR0807G196 Amborella trichopoda HOM05D005313 ORTHO05D006317 1.7e-80 303.5 192 80.7
ClCG07G006260 Citrullus lanatus HOM05D005313 ORTHO05D006317 1.2e-78 297.4 185 80.5
Cre02.g141200 Chlamydomonas reinhardtii HOM05D005313 ORTHO05D006317 1.5e-76 290.4 285 56.5
Ca_12605_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 2.8e-75 286.2 174 82.2
Zm00001eb320780 Zea mays HOM05D005313 ORTHO05D006317 2.0e-73 280.0 220 65.5
PRCOL_00006420 Prasinoderma coloniale HOM05D005313 ORTHO05D006317 6.6e-72 275.0 280 53.6
Dinv05167 Davidia involucrata HOM05D005313 ORTHO05D006317 2.5e-71 273.1 167 83.8
Actinidia26811 Actinidia chinensis HOM05D005313 ORTHO05D006317 5.4e-58 228.8 151 74.8
SHI04677 Sapria himalayana HOM05D005313 ORTHO05D006317 6.2e-54 215.3 160 70.0
Migut.L00982 Erythranthe guttata HOM05D005313 ORTHO05D006317 2.4e-50 203.4 287 45.3
Potri.010G113500 Populus trichocarpa HOM05D005313 ORTHO05D006317 8.6e-48 194.9 164 62.2
A06p44480 Brassica napus HOM05D005313 ORTHO05D006317 5.2e-45 185.7 241 50.6
CsaV3_UNG236450 Cucumis sativus L. HOM05D005313 ORTHO05D006317 5.4e-42 175.6 243 46.1
Ca_31307_v3 Cicer arietinum L. HOM05D005313 ORTHO05D006317 1.9e-34 150.6 274 33.2
Oeu045874.1 Olea europaea HOM05D005313 ORTHO05D006317 1.0e-32 144.8 140 60.0
SHI04675 Sapria himalayana HOM05D005313 ORTHO05D006317 1.3e-32 144.4 94 73.4
Sabra10G0083500 Salix brachista HOM05D005313 ORTHO05D006317 2.4e-29 133.7 210 42.4
COL.COLO4_10085 Corchorus olitorius HOM05D005313 ORTHO05D006317 6.9e-29 132.1 80 75.0
TPR.G36891 Trifolium pratense HOM05D005313 ORTHO05D006317 1.3e-27 127.9 101 68.3
AagrBONN_evm.TU.Sc2ySwM_368.1836 Anthoceros agrestis HOM05D005313 ORTHO05D006317 2.4e-26 123.6 96 60.4
Glyma.07G165500 Glycine max HOM05D005313 ORTHO05D006317 1.0e-24 118.2 81 74.1
CAN.G1020.2 Capsicum annuum HOM05D005313 ORTHO05D006317 3.9e-24 116.3 113 61.1
CSS0042289 Camellia sinensis var. sinensis HOM05D005313 ORTHO05D006317 3.6e-22 109.8 121 55.4
Actinidia14964 Actinidia chinensis HOM05D005313 ORTHO05D006317 1.5e-20 104.4 232 34.1
RcHm_v2.0_Chr2g0157601 Rosa chinensis HOM05D005313 ORTHO05D006317 7.6e-20 102.1 80 66.2
ClCG07G006250 Citrullus lanatus HOM05D005313 ORTHO05D006317 2.9e-19 100.1 67 70.1
CsaV3_UNG236470 Cucumis sativus L. HOM05D005313 ORTHO05D006317 2.4e-18 97.1 70 71.4
MBI06_g07791_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 2.1e-17 94.0 59 83.1
Aa31LG11G8270 Aethionema arabicum HOM05D005313 ORTHO05D006317 3.5e-17 93.2 88 61.4
Aa31LG11G8280 Aethionema arabicum HOM05D005313 ORTHO05D006317 5.6e-15 85.9 62 67.7
COL.COLO4_10084 Corchorus olitorius HOM05D005313 ORTHO05D006317 2.8e-14 83.6 53 75.5
BcaC06g31315 Brassica carinata HOM05D005313 ORTHO05D006317 5.3e-13 79.3 55 63.6
Actinidia01955 Actinidia chinensis HOM05D005313 ORTHO05D006317 4.2e-10 69.7 63 54.0
Oeu045873.1 Olea europaea HOM05D005313 ORTHO05D006317 7.4e-07 58.9 30 90.0


User provided reference genes

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