Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 5.1e-188 661.0 350 100.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 1.3e-167 593.2 352 90.1
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 4.2e-166 588.2 352 89.8
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 4.8e-162 574.7 352 88.1
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 2.0e-152 542.7 428 72.9
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 1.6e-144 516.5 314 88.9
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 4.4e-139 498.4 313 87.2
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.1e-137 492.3 313 86.6
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 5.4e-137 491.5 341 76.8
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 1.7e-130 469.9 353 72.2
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 4.9e-130 468.4 364 70.9
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 4.1e-129 465.3 338 72.5
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 7.0e-129 464.5 352 70.2
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 2.0e-128 463.0 340 72.1
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 2.8e-125 452.6 338 70.1
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.7e-125 451.8 353 70.0
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 5.2e-124 448.4 338 70.1
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 4.9e-122 441.8 370 66.8
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 2.0e-120 436.4 342 67.3
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 7.8e-120 434.5 341 68.0
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 3.0e-119 432.6 382 63.1
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 5.0e-119 431.8 335 68.1
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 4.3e-118 428.7 341 66.6
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 1.6e-117 426.8 354 64.1
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 2.1e-117 426.4 339 66.4
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 2.8e-117 426.0 337 68.2
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 8.0e-117 424.5 340 65.3
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 1.4e-116 423.7 336 66.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.8e-116 423.3 339 66.4
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 1.8e-116 423.3 351 64.4
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 4.4e-115 418.7 336 66.1
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.4e-115 418.7 339 65.2
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 2.2e-114 416.4 352 64.2
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 8.3e-114 414.5 341 64.5
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 1.9e-113 413.3 340 65.6
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 4.1e-113 412.1 335 66.0
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 5.4e-113 411.8 356 62.4
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 7.0e-113 411.4 339 65.5
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.5e-112 409.1 338 65.4
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 3.5e-112 409.1 338 64.2
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 3.0e-111 406.0 338 63.3
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 3.9e-111 405.6 338 63.6
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 6.6e-111 404.8 338 64.8
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 6.6e-111 404.8 338 63.3
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 1.1e-110 404.1 338 64.2
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 1.5e-110 403.7 350 62.0
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 3.3e-110 402.5 342 63.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 3.3e-110 402.5 341 64.5
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 5.6e-110 401.7 337 65.0
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 7.3e-110 401.4 352 62.2
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 7.3e-110 401.4 338 63.9
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 2.8e-109 399.4 336 62.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 8.1e-109 397.9 280 75.4
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 1.1e-108 397.5 339 62.8
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.3e-108 396.4 338 63.3
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 6.8e-108 394.8 461 52.3
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.4e-107 392.1 337 62.3
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 7.5e-107 391.3 339 60.8
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.7e-106 390.2 362 59.9
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 8.3e-106 387.9 335 62.1
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 1.9e-105 386.7 336 61.3
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 2.1e-104 383.3 335 61.2
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 2.1e-104 383.3 336 60.4
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 7.8e-104 381.3 344 59.3
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 3.0e-103 379.4 366 56.6
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.9e-103 379.0 356 57.6
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.9e-102 376.7 335 59.7
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.3e-102 375.6 339 60.5
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 1.2e-101 374.0 354 57.9
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 3.6e-101 372.5 356 57.9
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 1.5e-99 367.1 340 57.6
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 1.5e-99 367.1 348 56.3
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 2.6e-99 366.3 340 56.8
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 4.4e-99 365.5 340 56.8
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 4.4e-99 365.5 337 58.2
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 5.8e-99 365.2 297 66.3
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 7.6e-99 364.8 343 57.1
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 2.2e-98 363.2 297 65.7
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.8e-98 362.5 336 56.8
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.1e-97 360.9 446 48.4
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 1.9e-97 360.1 340 57.4
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 2.4e-97 359.8 337 58.2
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 2.4e-97 359.8 334 57.5
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.2e-96 357.5 312 60.6
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 1.6e-96 357.1 340 57.1
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 3.5e-96 355.9 340 56.8
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 4.6e-96 355.5 374 53.2
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 6.0e-96 355.1 340 56.8
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 1.0e-95 354.4 333 57.1
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 1.0e-95 354.4 349 58.5
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 6.6e-95 351.7 339 56.0
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.1e-93 346.7 316 59.2
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.4e-92 344.0 360 52.8
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 1.8e-92 343.6 316 59.2
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.3e-92 342.0 318 59.1
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 2.0e-91 340.1 293 62.5
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 5.8e-91 338.6 365 53.4
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 7.6e-91 338.2 246 74.8
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 2.9e-90 336.3 334 56.6
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 3.8e-90 335.9 345 55.1
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 1.6e-88 330.5 328 57.6
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 3.5e-88 329.3 298 60.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 1.7e-87 327.0 332 56.3
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 6.6e-87 325.1 271 63.8
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 8.7e-87 324.7 343 54.8
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.1e-86 324.3 407 48.9
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 4.3e-86 322.4 340 52.6
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 2.1e-85 320.1 323 55.7
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 2.8e-85 319.7 551 40.8
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 8.1e-85 318.2 319 61.1
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 8.1e-85 318.2 349 49.3
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.1e-84 317.8 299 57.2
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 4.0e-84 315.8 314 57.0
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 5.3e-84 315.5 300 58.3
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 7.9e-80 301.6 316 53.8
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 7.9e-80 301.6 240 70.0
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 5.1e-79 298.9 226 68.6
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 2.5e-78 296.6 306 55.6
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 9.0e-76 288.1 343 49.3
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.8e-71 273.9 346 47.4
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 3.9e-71 272.7 345 47.8
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 1.5e-62 244.2 332 46.1
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-58 230.7 128 92.2
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 5.0e-58 229.2 249 51.0
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 1.0e-55 221.5 156 72.4
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 1.0e-55 221.5 165 68.5
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 3.0e-55 219.9 197 64.0
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 3.2e-49 199.9 201 55.7
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 4.7e-48 196.1 161 67.1
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-47 194.9 192 55.7
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 1.0e-47 194.9 362 36.2
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.0e-47 194.9 224 50.9
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 5.1e-47 192.6 325 38.2
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 1.7e-45 187.6 320 38.8
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 1.3e-42 177.9 165 58.8
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 4.2e-41 172.9 296 38.5
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.2e-40 171.4 114 75.4
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.2e-40 171.4 114 75.4
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-39 168.3 138 64.5
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 7.0e-36 155.6 234 44.4
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 1.2e-32 144.8 101 72.3
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.7e-27 127.1 117 60.7
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 7.7e-27 125.6 105 62.9
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-25 119.8 152 47.4
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 2.3e-23 114.0 154 46.1
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 8.8e-23 112.1 228 36.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 4.4e-22 109.8 113 52.2
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 1.9e-17 94.4 360 27.8
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.8e-16 90.5 116 44.0
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 7.0e-12 75.9 87 49.4
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 1.3e-10 71.6 59 62.7
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 1.2e-08 65.1 242 25.6
Cfa023794 Carpinus fangiana HOM05D004482 ORTHO05D121655 8.0e-08 62.4 156 34.6
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 2.0e-06 57.8 48 62.5


User provided reference genes

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