Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1330.2 Capsicum annuum HOM05D001775 ORTHO05D006205 1.2e-94 349.7 168 100.0
Peaxi162Scf00680g00415 Petunia axillaris HOM05D001775 ORTHO05D006205 5.1e-85 317.8 168 88.7
Nitab4.5_0001756g0150 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.8e-82 309.3 169 86.4
Nitab4.5_0029491g0010 Nicotiana tabacum HOM05D001775 ORTHO05D006205 1.8e-82 309.3 169 86.4
Solyc04g082680.3 Solanum lycopersicum HOM05D001775 ORTHO05D006205 3.1e-82 308.5 168 87.5
Sopen04g036310 Solanum pennellii HOM05D001775 ORTHO05D006205 2.0e-81 305.8 168 86.9
PGSC0003DMG400009918 Solanum tuberosum HOM05D001775 ORTHO05D006205 1.7e-80 302.8 168 85.1
Actinidia15517 Actinidia chinensis HOM05D001775 ORTHO05D006205 7.9e-62 240.7 167 65.9
Hma1.2p1_0612F.1_g189000 Hydrangea macrophylla HOM05D001775 ORTHO05D006205 4.3e-60 235.0 169 66.3
FvH4_5g25920 Fragaria vesca HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 61.3
FAN13G2435 Fragaria x ananassa HOM05D001775 ORTHO05D006205 9.7e-60 233.8 168 61.3
Manes.18G002900 Manihot esculenta HOM05D001775 ORTHO05D006205 1.3e-59 233.4 168 63.1
FAN08G0076 Fragaria x ananassa HOM05D001775 ORTHO05D006205 1.6e-59 233.0 168 61.3
FAN04G1208 Fragaria x ananassa HOM05D001775 ORTHO05D006205 2.2e-59 232.6 168 61.3
CSS0024195 Camellia sinensis var. sinensis HOM05D001775 ORTHO05D006205 3.7e-59 231.9 168 62.5
CiPaw.07G134900 Carya illinoinensis HOM05D001775 ORTHO05D006205 4.8e-59 231.5 168 63.1
GSVIVG01013411001 Vitis vinifera HOM05D001775 ORTHO05D006205 4.1e-58 228.4 168 61.9
DCAR_016792 Daucus carota HOM05D001775 ORTHO05D006205 6.9e-58 227.6 168 61.9
Ciclev10002700m.g Citrus clementina HOM05D001775 ORTHO05D006205 9.0e-58 227.3 168 60.1
RcHm_v2.0_Chr7g0216421 Rosa chinensis HOM05D001775 ORTHO05D006205 9.0e-58 227.3 168 60.1
Oeu016871.1 Olea europaea HOM05D001775 ORTHO05D006205 1.5e-57 226.5 170 61.8
PSO675G2258 Papaver somniferum HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 61.9
TAR628G0191 Trochodendron aralioides HOM05D001775 ORTHO05D006205 3.4e-57 225.3 168 61.9
Cfa014124 Carpinus fangiana HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 60.7
Hund05085 Selenicereus undatus HOM05D001775 ORTHO05D006205 7.7e-57 224.2 168 60.7
AL2G36510 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 62.5
Cc10_g00340 Coffea canephora HOM05D001775 ORTHO05D006205 1.0e-56 223.8 168 60.7
Oeu019572.1 Olea europaea HOM05D001775 ORTHO05D006205 1.0e-56 223.8 170 60.6
QL02p015365 Quercus lobata HOM05D001775 ORTHO05D006205 1.0e-56 223.8 167 62.3
QL02p015396 Quercus lobata HOM05D001775 ORTHO05D006205 1.0e-56 223.8 167 62.3
AT1G76405 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 1.7e-56 223.0 168 62.5
Potri.005G255100 Populus trichocarpa HOM05D001775 ORTHO05D006205 2.2e-56 222.6 168 58.9
MD06G1005500 Malus domestica HOM05D001775 ORTHO05D006205 6.5e-56 221.1 168 57.7
PSO541G5829 Papaver somniferum HOM05D001775 ORTHO05D006205 1.1e-55 220.3 168 60.1
Carub.0002s2331 Capsella rubella HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 62.5
Thhalv10019232m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.9e-55 219.5 168 61.3
Cpa.g.sc26.151 Carica papaya HOM05D001775 ORTHO05D006205 2.5e-55 219.2 170 60.0
Thecc.08G064000 Theobroma cacao HOM05D001775 ORTHO05D006205 2.5e-55 219.2 168 60.7
C06p50600 Brassica napus HOM05D001775 ORTHO05D006205 3.2e-55 218.8 168 61.3
Prupe.5G006800 Prunus persica HOM05D001775 ORTHO05D006205 5.5e-55 218.0 163 58.3
CARHR069960 Cardamine hirsuta HOM05D001775 ORTHO05D006205 7.2e-55 217.6 168 60.7
TWI12G0153 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 9.4e-55 217.2 168 58.9
BcaC08g47254 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.7
A07p42030 Brassica napus HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.7
BolC6t40085H Brassica oleracea HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.7
BraA07t31733Z Brassica rapa HOM05D001775 ORTHO05D006205 1.2e-54 216.9 168 60.7
MSTRG.24916 Avicennia marina HOM05D001775 ORTHO05D006205 7.9e-54 214.2 168 58.9
SGA_v2.0_scaffold133G34600 Striga asiatica HOM05D001775 ORTHO05D006205 1.4e-53 213.4 169 60.9
Gohir.A05G177800 Gossypium hirsutum HOM05D001775 ORTHO05D006205 1.8e-53 213.0 168 59.5
Gorai.009G186200 Gossypium raimondii HOM05D001775 ORTHO05D006205 2.3e-53 212.6 168 58.9
Gohir.D05G181200 Gossypium hirsutum HOM05D001775 ORTHO05D006205 3.0e-53 212.2 168 59.5
Sp5g31560 Schrenkiella parvula HOM05D001775 ORTHO05D006205 3.0e-53 212.2 168 59.5
Haze_22846 Corylus avellana HOM05D001775 ORTHO05D006205 5.1e-53 211.5 172 58.1
SalBow7G0166 Salvia bowleyana HOM05D001775 ORTHO05D006205 5.1e-53 211.5 168 58.9
vmacro21778 Vaccinium macrocarpon HOM05D001775 ORTHO05D006205 8.8e-53 210.7 205 54.1
BcaC08g47138 Brassica carinata HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 58.9
Phvul.009G007300 Phaseolus vulgaris HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 57.7
Hund01795 Selenicereus undatus HOM05D001775 ORTHO05D006205 1.1e-52 210.3 168 56.5
Eucgr.F01803 Eucalyptus grandis HOM05D001775 ORTHO05D006205 2.0e-52 209.5 168 56.5
arahy.Tifrunner.gnm1.ann1.62LGBX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.5e-52 209.1 168 57.1
AT1G20816 Arabidopsis thaliana HOM05D001775 ORTHO05D006205 5.7e-52 208.0 168 57.7
Sabra05G0197600 Salix brachista HOM05D001775 ORTHO05D006205 7.4e-52 207.6 168 57.1
EL10Ac1g01895 Beta vulgaris HOM05D001775 ORTHO05D006205 9.7e-52 207.2 170 54.7
Sp1g18510 Schrenkiella parvula HOM05D001775 ORTHO05D006205 9.7e-52 207.2 168 57.1
CARHR021240 Cardamine hirsuta HOM05D001775 ORTHO05D006205 1.3e-51 206.8 168 58.9
Ca_15392_v3 Cicer arietinum L. HOM05D001775 ORTHO05D006205 1.7e-51 206.5 168 58.9
Migut.C00377 Erythranthe guttata HOM05D001775 ORTHO05D006205 1.7e-51 206.5 168 57.1
arahy.Tifrunner.gnm1.ann1.NA36AX Arachis hypogaea HOM05D001775 ORTHO05D006205 2.2e-51 206.1 168 56.5
Glyma.06G015300 Glycine max HOM05D001775 ORTHO05D006205 2.8e-51 205.7 168 57.1
AL1G33820 Arabidopsis lyrata HOM05D001775 ORTHO05D006205 4.8e-51 204.9 168 56.0
A07p28510 Brassica napus HOM05D001775 ORTHO05D006205 4.8e-51 204.9 169 59.8
Carub.0001s2027 Capsella rubella HOM05D001775 ORTHO05D006205 4.8e-51 204.9 168 57.7
BraA07t30489Z Brassica rapa HOM05D001775 ORTHO05D006205 6.3e-51 204.5 169 59.8
BcaC08g45531 Brassica carinata HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 58.9
C06p32060 Brassica napus HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 58.9
THA.LOC104813743 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 8.2e-51 204.1 168 56.5
BolC6t38332H Brassica oleracea HOM05D001775 ORTHO05D006205 1.1e-50 203.8 168 58.9
AUR62035157 Chenopodium quinoa HOM05D001775 ORTHO05D006205 1.8e-50 203.0 170 51.8
Thhalv10008937m.g Eutrema salsugineum HOM05D001775 ORTHO05D006205 1.8e-50 203.0 168 57.1
AUR62024107 Chenopodium quinoa HOM05D001775 ORTHO05D006205 5.3e-50 201.4 170 51.2
TPR.G38180 Trifolium pratense HOM05D001775 ORTHO05D006205 6.9e-50 201.1 179 54.2
Aa31LG4G6480 Aethionema arabicum HOM05D001775 ORTHO05D006205 1.2e-49 200.3 173 56.6
BcaB02g07061 Brassica carinata HOM05D001775 ORTHO05D006205 1.2e-49 200.3 169 58.0
ClCG08G009240 Citrullus lanatus HOM05D001775 ORTHO05D006205 2.0e-49 199.5 168 56.5
BcaB07g32074 Brassica carinata HOM05D001775 ORTHO05D006205 2.6e-49 199.1 168 55.4
Sc02g0009220 Simmondsia chinensis HOM05D005712 ORTHO05D007865 5.9e-49 198.0 153 60.8
Sed0015170 Sechium edule HOM05D001775 ORTHO05D006205 1.0e-48 197.2 168 56.0
MBI08_g29079_MAGBIO Magnolia biondii HOM05D001775 ORTHO05D006205 3.8e-48 195.3 170 52.9
C05p19360 Brassica napus HOM05D001775 ORTHO05D009111 8.5e-48 194.1 168 54.8
BolC5t30639H Brassica oleracea HOM05D001775 ORTHO05D006205 8.5e-48 194.1 168 54.8
BcaC05g25983 Brassica carinata HOM05D001775 ORTHO05D006205 1.1e-47 193.7 168 54.8
A06p16800 Brassica napus HOM05D001775 ORTHO05D009111 1.1e-47 193.7 168 54.8
Ah.00g001090 Amaranthus hybridus HOM05D001775 ORTHO05D006205 1.4e-47 193.4 172 52.3
BraA06t24788Z Brassica rapa HOM05D001775 ORTHO05D006205 1.9e-47 193.0 168 54.8
Lalb_Chr11g0061401 Lupinus albus HOM05D001775 ORTHO05D006205 2.5e-47 192.6 168 52.4
THA.LOC104811999 Tarenaya hassleriana HOM05D001775 ORTHO05D006205 2.5e-47 192.6 168 54.8
PGR083G1854 Punica granatum HOM05D001775 ORTHO05D006205 3.2e-47 192.2 184 53.3
Rhsim06G0004200 Rhododendron simsii HOM05D001775 ORTHO05D006205 2.1e-46 189.5 237 47.3
Lsat_1_v5_gn_9_41801 Lactuca sativa HOM05D001775 ORTHO05D006205 6.1e-46 188.0 181 48.6
CsaV3_6G031380 Cucumis sativus L. HOM05D001775 ORTHO05D006205 7.9e-46 187.6 168 53.6
HanXRQChr05g0144711 Helianthus annuus HOM05D001775 ORTHO05D006205 2.3e-45 186.0 196 45.4
Manes.05G125900 Manihot esculenta HOM05D001775 ORTHO05D006205 6.7e-45 184.5 136 59.6
TWI56G1014 Tripterygium wilfordii HOM05D001775 ORTHO05D006205 8.8e-45 184.1 201 45.3
ECA232G0408 Erigeron canadensis HOM05D000593 ORTHO05D006205 2.6e-44 182.6 154 51.9
Atru.chr13.81 Acer truncatum HOM05D001775 ORTHO05D006205 7.4e-44 181.0 141 58.9
Medtr3g115990 Medicago truncatula HOM05D001775 ORTHO05D006205 1.3e-43 180.3 205 47.3
HanXRQChr14g0427901 Helianthus annuus HOM05D001775 ORTHO05D006205 1.7e-43 179.9 165 49.1
ATR0807G198 Amborella trichopoda HOM05D001775 ORTHO05D006205 2.2e-43 179.5 169 50.9
HanXRQChr15g0492581 Helianthus annuus HOM05D001775 ORTHO05D006205 4.8e-43 178.3 189 45.5
HPP92_015233 Vanilla planifolia HOM05D001775 ORTHO05D006205 4.1e-42 175.3 168 47.0
FAN18G0260 Fragaria x ananassa HOM05D001775 ORTHO05D006205 5.3e-42 174.9 125 57.6
unitig_0.g2075 Utricularia gibba HOM05D001775 ORTHO05D006205 5.3e-42 174.9 190 46.3
Lsat_1_v5_gn_2_1320 Lactuca sativa HOM05D001775 ORTHO05D006205 1.6e-41 173.3 165 46.7
MELO3C026523.2 Cucumis melo HOM05D001775 ORTHO05D006205 3.8e-40 168.7 193 46.6
ECA238G0508 Erigeron canadensis HOM05D001775 ORTHO05D006205 2.5e-39 166.0 190 43.7
COL.COLO4_36626 Corchorus olitorius HOM05D001775 ORTHO05D006205 6.1e-38 161.4 140 55.7
Dinv31976 Davidia involucrata HOM05D001775 ORTHO05D000295 8.0e-38 161.0 167 49.7
Duzib116G0384 Durio zibethinus HOM05D001775 ORTHO05D006205 5.2e-37 158.3 168 47.0
Zm00001eb259570 Zea mays HOM05D001775 ORTHO05D006205 2.4e-34 149.4 174 44.8
Lj4A6T36 Lonicera japonica HOM05D001775 ORTHO05D006205 1.6e-33 146.7 109 58.7
Mapoly0001s0026 Marchantia polymorpha HOM05D001775 ORTHO05D006205 2.0e-33 146.4 169 40.8
Psat5g008840 Pisum sativum HOM05D001775 ORTHO05D006205 2.7e-33 146.0 151 51.7
Pp3c16_8850 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.7e-32 143.3 169 43.2
CDE05G0091 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 2.2e-32 142.9 173 42.2
CDE05G0488 Ceratophyllum demersum HOM05D001775 ORTHO05D006205 5.0e-32 141.7 145 43.4
Duzib041G0706 Durio zibethinus HOM05D001775 ORTHO05D006205 6.5e-32 141.4 168 44.0
CANSAT25G3735 Cannabis sativa HOM05D001775 ORTHO05D006205 1.5e-31 140.2 104 56.7
Os02g0832200 Oryza sativa ssp. japonica HOM05D001775 ORTHO05D006205 1.2e-30 137.1 186 38.7
Rhsim06G0004000 Rhododendron simsii HOM05D005712 ORTHO05D007865 1.6e-30 136.7 145 49.7
Nn5g31022 Nelumbo nucifera HOM05D001775 ORTHO05D006205 6.3e-27 124.8 168 40.5
arahy.Tifrunner.gnm1.ann1.3KDH9X Arachis hypogaea HOM05D001775 ORTHO05D006205 2.5e-23 112.8 89 56.2
arahy.Tifrunner.gnm1.ann1.5GY58N Arachis hypogaea HOM05D001775 ORTHO05D006205 1.6e-22 110.2 97 54.6
MCO07G511 Micromonas commoda HOM05D001775 ORTHO05D006205 1.2e-20 104.0 171 36.3
Nitab4.5_0005347g0040 Nicotiana tabacum HOM05D001775 ORTHO05D006205 2.0e-20 103.2 52 82.7
VMungo1309G1483 Vigna mungo HOM05D001775 ORTHO05D006205 3.7e-19 99.0 157 36.9
AagrBONN_evm.TU.Sc2ySwM_344.4857 Anthoceros agrestis HOM05D001775 ORTHO05D006205 6.3e-19 98.2 142 35.9
PRCOL_00001546 Prasinoderma coloniale HOM05D001775 ORTHO05D006205 6.3e-19 98.2 169 31.4
CBR_g44541 Chara braunii HOM05D001775 ORTHO05D006205 4.5e-17 92.0 169 30.2
Pp3c5_19490 Physcomitrium patens HOM05D001775 ORTHO05D006205 1.0e-16 90.9 98 41.8
HPP92_015234 Vanilla planifolia HOM05D001775 ORTHO05D006205 2.9e-16 89.4 103 41.7
SMO117G0070 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 1.1e-15 87.4 131 35.1
arahy.Tifrunner.gnm1.ann1.S8I99S Arachis hypogaea HOM05D001775 ORTHO05D006205 4.3e-15 85.5 86 53.5
SMO114G0103 Selaginella moellendorffii HOM05D001775 ORTHO05D006205 5.6e-15 85.1 136 31.6
AagrBONN_evm.TU.Sc2ySwM_362.1823 Anthoceros agrestis HOM05D001775 ORTHO05D006205 3.0e-13 79.3 175 28.6
arahy.Tifrunner.gnm1.ann1.FUJ1Q4 Arachis hypogaea HOM05D001795 ORTHO05D006205 1.6e-09 67.0 67 44.8
Sc15g0004100 Simmondsia chinensis HOM05D001775 ORTHO05D006205 2.1e-06 56.6 146 29.5


User provided reference genes

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