Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1327.7 Capsicum annuum HOM05D000559 ORTHO05D000106 2.1e-65 252.7 177 100.0
CAN.G1327.6 Capsicum annuum HOM05D004269 ORTHO05D007861 7.3e-34 147.9 84 90.5
CAN.G362.39 Capsicum annuum HOM05D000176 ORTHO05D000106 7.1e-29 131.3 86 80.2
CAN.G968.6 Capsicum annuum HOM05D000559 ORTHO05D000596 3.0e-19 99.4 62 82.3
Atru.chr1.1844 Acer truncatum HOM05D000559 ORTHO05D000596 7.4e-10 68.2 44 79.5
CAN.G1061.43 Capsicum annuum HOM05D000559 ORTHO05D000596 7.4e-10 68.2 44 79.5
AUR62023226 Chenopodium quinoa HOM05D000559 ORTHO05D000596 1.3e-09 67.4 51 72.5
Prupe.3G160500 Prunus persica HOM05D000559 ORTHO05D000596 1.3e-09 67.4 42 76.2
CiPaw.04G046400 Carya illinoinensis HOM05D000559 ORTHO05D000596 1.6e-09 67.0 44 77.3
Nitab4.5_0002664g0050 Nicotiana tabacum HOM05D000559 ORTHO05D000596 1.6e-09 67.0 44 77.3
Nitab4.5_0009638g0010 Nicotiana tabacum HOM05D000559 ORTHO05D000596 1.6e-09 67.0 44 77.3
Solyc02g091490.4 Solanum lycopersicum HOM05D000559 ORTHO05D000596 2.2e-09 66.6 44 77.3
Sopen02g036110 Solanum pennellii HOM05D000559 ORTHO05D000596 2.2e-09 66.6 44 77.3
PGSC0003DMG400030653 Solanum tuberosum HOM05D000559 ORTHO05D000596 2.2e-09 66.6 44 77.3
COL.COLO4_15736 Corchorus olitorius HOM05D000559 ORTHO05D000596 2.8e-09 66.2 56 64.3
Eucgr.F02835 Eucalyptus grandis HOM05D000559 ORTHO05D000596 2.8e-09 66.2 44 77.3
Medtr5g079460 Medicago truncatula HOM05D000559 ORTHO05D000596 3.7e-09 65.9 44 77.3
Actinidia17224 Actinidia chinensis HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Ah.16g101230 Amaranthus hybridus HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Cpa.g.sc116.34 Carica papaya HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Cc07_g08070 Coffea canephora HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Haze_14235 Corylus avellana HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
FAN28G0710 Fragaria x ananassa HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Gohir.A07G077200 Gossypium hirsutum HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Gohir.D07G081900 Gossypium hirsutum HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Gorai.001G087000 Gossypium raimondii HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
HanXRQChr14g0440331 Helianthus annuus HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Lj2A434G48 Lonicera japonica HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
MD09G1262800 Malus domestica HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Oeu000911.1 Olea europaea HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
RcHm_v2.0_Chr3g0493391 Rosa chinensis HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
Thecc.04G119000 Theobroma cacao HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
TWI74G0742 Tripterygium wilfordii HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
GSVIVG01030838001 Vitis vinifera HOM05D000559 ORTHO05D000596 4.8e-09 65.5 44 75.0
CSS0040397 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 6.3e-09 65.1 44 75.0
Duzib133G0871 Durio zibethinus HOM05D000559 ORTHO05D000596 6.3e-09 65.1 44 75.0
ECA238G1776 Erigeron canadensis HOM05D000559 ORTHO05D000596 6.3e-09 65.1 48 68.8
Lsat_1_v5_gn_2_79920 Lactuca sativa HOM05D000559 ORTHO05D000596 6.3e-09 65.1 48 68.8
Lalb_Chr10g0104451 Lupinus albus HOM05D000559 ORTHO05D000596 6.3e-09 65.1 44 72.7
Potri.017G126300 Populus trichocarpa HOM05D000559 ORTHO05D000596 6.3e-09 65.1 44 75.0
Sabra17G0106000 Salix brachista HOM05D000559 ORTHO05D000596 6.3e-09 65.1 44 75.0
MBI12_g40235_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 8.2e-09 64.7 48 68.8
Phvul.008G234800 Phaseolus vulgaris HOM05D000559 ORTHO05D000596 8.2e-09 64.7 44 75.0
Psat2g041960 Pisum sativum HOM05D000559 ORTHO05D000596 8.2e-09 64.7 44 75.0
TPR.G3488 Trifolium pratense HOM05D000559 ORTHO05D000596 8.2e-09 64.7 44 75.0
arahy.Tifrunner.gnm1.ann1.P1Z684 Arachis hypogaea HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 72.7
arahy.Tifrunner.gnm1.ann1.X4R686 Arachis hypogaea HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 72.7
Ca_05786_v3 Cicer arietinum L. HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 75.0
Ca_30987_v3 Cicer arietinum L. HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 75.0
Hma1.2p1_0283F.1_g113460 Hydrangea macrophylla HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 75.0
LjContig00141g0006487 Lotus japonicus HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 75.0
MD17G1257700 Malus domestica HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 72.7
Peaxi162Scf02113g00016 Petunia axillaris HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 75.0
SalBow3G4654 Salvia bowleyana HOM05D000559 ORTHO05D000596 1.1e-08 64.3 51 68.6
Sc14g0004870 Simmondsia chinensis HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 72.7
HPP92_026954 Vanilla planifolia HOM05D000559 ORTHO05D000596 1.1e-08 64.3 44 72.7
AT1G66430 Arabidopsis thaliana HOM05D000559 ORTHO05D000596 1.4e-08 63.9 48 66.7
CANSAT78G1887 Cannabis sativa HOM05D000559 ORTHO05D000596 1.4e-08 63.9 48 66.7
AUR62023180 Chenopodium quinoa HOM05D000559 ORTHO05D000596 1.4e-08 63.9 44 72.7
FvH4_1g28890 Fragaria vesca HOM05D000559 ORTHO05D000596 1.4e-08 63.9 44 72.7
FAN19G2201 Fragaria x ananassa HOM05D000559 ORTHO05D000596 1.4e-08 63.9 44 72.7
Potri.004G089300 Populus trichocarpa HOM05D000559 ORTHO05D000596 1.4e-08 63.9 44 72.7
EL10Ac2g04469 Beta vulgaris HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
C06p39810 Brassica napus HOM05D000559 ORTHO05D000596 1.8e-08 63.5 48 66.7
CSS0000483 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
CSS0004917 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
CSS0006539 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
CSS0009514 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
CSS0029938 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
CSS0048497 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
Dinv14887 Davidia involucrata HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 75.0
Glyma.02G245800 Glycine max HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
Oeu047406.1 Olea europaea HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
PGR042G2739 Punica granatum HOM05D000559 ORTHO05D000596 1.8e-08 63.5 44 72.7
Migut.H00276 Erythranthe guttata HOM05D000559 ORTHO05D000596 2.4e-08 63.2 51 68.6
Manes.01G116600 Manihot esculenta HOM05D000559 ORTHO05D000596 2.4e-08 63.2 44 72.7
Psat7g021760 Pisum sativum HOM05D000559 ORTHO05D000596 3.1e-08 62.8 46 71.7
Rhsim08G0087000 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.1e-08 62.8 44 72.7
TAR371G1128 Trochodendron aralioides HOM05D000559 ORTHO05D000596 3.1e-08 62.8 44 72.7
BcaC08g46054 Brassica carinata HOM05D000559 ORTHO05D000596 4.1e-08 62.4 48 64.6
A07p33410 Brassica napus HOM05D000559 ORTHO05D000596 4.1e-08 62.4 48 64.6
BolC6t39068H Brassica oleracea HOM05D000559 ORTHO05D000596 4.1e-08 62.4 48 64.6
BraA07t30968Z Brassica rapa HOM05D000559 ORTHO05D000596 4.1e-08 62.4 48 64.6
Psat5g185320 Pisum sativum HOM05D000559 ORTHO05D006587 4.1e-08 62.4 43 74.4
Aqoxy3G00099 Aquilegia oxysepala HOM05D000559 ORTHO05D000596 5.3e-08 62.0 44 70.5
Dinv28509 Davidia involucrata HOM05D000559 ORTHO05D000596 5.3e-08 62.0 44 70.5
TAR291G0002 Trochodendron aralioides HOM05D000559 ORTHO05D000596 5.3e-08 62.0 44 70.5
VMungo0331G1398 Vigna mungo HOM05D000559 ORTHO05D000596 5.3e-08 62.0 43 74.4
CiPaw.03G069800 Carya illinoinensis HOM05D000559 ORTHO05D000596 6.9e-08 61.6 44 72.7
vmacro18046 Vaccinium macrocarpon HOM05D000559 ORTHO05D000596 6.9e-08 61.6 44 70.5
Aa31LG2G3100 Aethionema arabicum HOM05D000559 ORTHO05D000596 9.0e-08 61.2 33 78.8
AL2G24240 Arabidopsis lyrata HOM05D000559 ORTHO05D000596 9.0e-08 61.2 33 78.8
BcaB03g15268 Brassica carinata HOM05D000559 ORTHO05D000596 9.0e-08 61.2 33 78.8
CARHR058420 Cardamine hirsuta HOM05D000559 ORTHO05D000596 9.0e-08 61.2 48 64.6
Ciclev10011546m.g Citrus clementina HOM05D000559 ORTHO05D000596 9.0e-08 61.2 44 72.7
Dinv32407 Davidia involucrata HOM05D000559 ORTHO05D000596 9.0e-08 61.2 44 68.2
Manes.02G075300 Manihot esculenta HOM05D000559 ORTHO05D000596 9.0e-08 61.2 33 81.8
Nn3g18253 Nelumbo nucifera HOM05D000559 ORTHO05D000596 9.0e-08 61.2 44 72.7
Sabra04G0059900 Salix brachista HOM05D000559 ORTHO05D000596 9.0e-08 61.2 42 64.3
Sp5g21500 Schrenkiella parvula HOM05D000559 ORTHO05D000596 9.0e-08 61.2 33 78.8
unitig_0.g481 Utricularia gibba HOM05D000559 ORTHO05D000596 9.0e-08 61.2 44 68.2
Carub.0002s1247 Capsella rubella HOM05D000559 ORTHO05D000596 1.2e-07 60.8 33 78.8
MBI11_g11984_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 1.2e-07 60.8 44 68.2
MBI11_g36365_MAGBIO Magnolia biondii HOM05D000559 ORTHO05D000596 1.2e-07 60.8 44 68.2
QL11p003861 Quercus lobata HOM05D000559 ORTHO05D000596 1.2e-07 60.8 33 78.8
VMungo1215G1581 Vigna mungo HOM05D000559 ORTHO05D000596 1.2e-07 60.8 43 72.1
Thhalv10018694m.g Eutrema salsugineum HOM05D000559 ORTHO05D000596 2.0e-07 60.1 33 78.8
Hma1.2p1_0488F.1_g163930 Hydrangea macrophylla HOM05D000559 ORTHO05D000596 2.0e-07 60.1 44 68.2
SGA_v2.0_scaffold49G18157 Striga asiatica HOM05D000559 ORTHO05D000596 3.4e-07 59.3 33 78.8
VMungo0647G2076 Vigna mungo HOM05D000559 ORTHO05D000596 3.4e-07 59.3 43 72.1
AUR62021269 Chenopodium quinoa HOM05D000559 ORTHO05D000596 4.5e-07 58.9 44 65.9
Sed0004935 Sechium edule HOM05D000559 ORTHO05D000596 4.5e-07 58.9 33 78.8
ATR0564G090 Amborella trichopoda HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 65.9
ATR0661G263 Amborella trichopoda HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 63.6
Aqoxy7G00499 Aquilegia oxysepala HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 65.9
Aqoxy7G00583 Aquilegia oxysepala HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 65.9
ClCG05G011020 Citrullus lanatus HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 70.5
MELO3C020278.2 Cucumis melo HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 70.5
CsaV3_3G021590 Cucumis sativus L. HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 70.5
PSO017G4436 Papaver somniferum HOM05D000559 ORTHO05D000596 5.9e-07 58.5 44 65.9
Actinidia13541 Actinidia chinensis HOM05D000559 ORTHO05D000596 7.7e-07 58.2 44 65.9
CSS0031541 Camellia sinensis var. sinensis HOM05D000559 ORTHO05D000596 7.7e-07 58.2 44 65.9
MD02G1197500 Malus domestica HOM05D000559 ORTHO05D000596 7.7e-07 58.2 44 68.2
Prupe.2G287100 Prunus persica HOM05D000559 ORTHO05D000596 7.7e-07 58.2 44 63.6
VMungo0647G2063 Vigna mungo HOM05D000559 ORTHO05D000596 7.7e-07 58.2 43 69.8
DCAR_020209 Daucus carota HOM05D000559 ORTHO05D000596 1.0e-06 57.8 44 65.9
Prupe.2G151100 Prunus persica HOM05D000559 ORTHO05D000596 1.0e-06 57.8 44 68.2
SMO358G0503 Selaginella moellendorffii HOM05D000559 ORTHO05D000596 1.0e-06 57.8 44 68.2
THA.LOC104805607 Tarenaya hassleriana HOM05D000559 ORTHO05D000596 1.0e-06 57.8 33 75.8
vmacro06736 Vaccinium macrocarpon HOM05D000559 ORTHO05D000596 1.0e-06 57.8 44 65.9
vmacro09871 Vaccinium macrocarpon HOM05D000559 ORTHO05D000596 1.0e-06 57.8 44 68.2
MD00G1004100 Malus domestica HOM05D000559 ORTHO05D000596 1.3e-06 57.4 44 63.6
EL10Ac3g05743 Beta vulgaris HOM05D000559 ORTHO05D000596 1.7e-06 57.0 44 63.6
Duzib205G1292 Durio zibethinus HOM05D000559 ORTHO05D000596 1.7e-06 57.0 44 63.6
Lj5g0024433 Lotus japonicus HOM05D000559 ORTHO05D000596 1.7e-06 57.0 44 65.9
Hund16212 Selenicereus undatus HOM05D000559 ORTHO05D000596 1.7e-06 57.0 44 68.2
Zm00001eb372200 Zea mays HOM05D000559 ORTHO05D000596 1.7e-06 57.0 44 65.9
CiPaw.03G100100 Carya illinoinensis HOM05D000559 ORTHO05D000596 2.2e-06 56.6 44 65.9
AUR62016061 Chenopodium quinoa HOM05D000559 ORTHO05D000596 2.2e-06 56.6 43 65.1
COL.COLO4_14227 Corchorus olitorius HOM05D000559 ORTHO05D000596 2.2e-06 56.6 44 65.9
DCAR_018140 Daucus carota HOM05D000559 ORTHO05D000596 2.2e-06 56.6 44 65.9
Duzib068G0457 Durio zibethinus HOM05D000559 ORTHO05D000596 2.2e-06 56.6 44 65.9
arahy.Tifrunner.gnm1.ann1.4ZP1HR Arachis hypogaea HOM05D000559 ORTHO05D000596 2.9e-06 56.2 44 65.9
arahy.Tifrunner.gnm1.ann1.FS0NK9 Arachis hypogaea HOM05D000559 ORTHO05D000596 2.9e-06 56.2 44 65.9
MD01G1193000 Malus domestica HOM05D000559 ORTHO05D000596 2.9e-06 56.2 44 61.4
Manes.06G141400 Manihot esculenta HOM05D000559 ORTHO05D000596 2.9e-06 56.2 44 61.4
CANSAT21G2204 Cannabis sativa HOM05D000559 ORTHO05D000596 3.8e-06 55.8 44 63.6
Cfa001817 Carpinus fangiana HOM05D000559 ORTHO05D000596 3.8e-06 55.8 33 72.7
Hma1.2p1_0033F.1_g020770 Hydrangea macrophylla HOM05D000559 ORTHO05D000596 3.8e-06 55.8 51 60.8
Oeu022532.1 Olea europaea HOM05D000559 ORTHO05D000596 3.8e-06 55.8 44 65.9
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 3.8e-06 55.8 44 61.4
Lalb_Chr03g0026071 Lupinus albus HOM05D000559 ORTHO05D000596 5.0e-06 55.5 44 63.6
Nn1g01286 Nelumbo nucifera HOM05D000559 ORTHO05D000596 5.0e-06 55.5 44 63.6
CAN.G1752.1 Capsicum annuum HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
ClCG01G005330 Citrullus lanatus HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 61.4
Glyma.10G240800 Glycine max HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
Glyma.20G153900 Glycine max HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
Lj7C524T14 Lonicera japonica HOM05D000559 ORTHO05D000596 6.5e-06 55.1 74 44.6
PSO478G4403 Papaver somniferum HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
Phvul.007G065200 Phaseolus vulgaris HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
Sed0016640 Sechium edule HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 61.4
VMungo0720G0352 Vigna mungo HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
GSVIVG01018449001 Vitis vinifera HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 63.6
GSVIVG01027578001 Vitis vinifera HOM05D000559 ORTHO05D000596 6.5e-06 55.1 44 65.9
Cpa.g.c43122 Carica papaya HOM05D000559 ORTHO05D000596 8.5e-06 54.7 44 61.4
Ca_16685_v3 Cicer arietinum L. HOM05D000559 ORTHO05D000596 8.5e-06 54.7 44 63.6
Os06g0232200 Oryza sativa ssp. japonica HOM05D000559 ORTHO05D000596 8.5e-06 54.7 44 65.9
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 8.5e-06 54.7 44 63.6


User provided reference genes

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