Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1324.6 Capsicum annuum HOM05D008285 ORTHO05D010431 8.7e-27 122.9 61 100.0
CAN.G1045.12 Capsicum annuum HOM05D008285 ORTHO05D010431 3.7e-25 117.5 61 96.7
CAN.G1045.15 Capsicum annuum HOM05D008285 ORTHO05D010431 3.7e-25 117.5 61 96.7
CAN.G222.14 Capsicum annuum HOM05D008285 ORTHO05D010431 3.7e-25 117.5 61 96.7
CAN.G413.8 Capsicum annuum HOM05D008285 ORTHO05D010431 3.7e-25 117.5 61 96.7
CAN.G1431.2 Capsicum annuum HOM05D008285 ORTHO05D010431 1.1e-24 115.9 61 95.1
CAN.G8.24 Capsicum annuum HOM05D008285 ORTHO05D010431 5.3e-24 113.6 61 93.4
CAN.G965.8 Capsicum annuum HOM05D008285 ORTHO05D010431 1.2e-23 112.5 61 93.4
CAN.G657.10 Capsicum annuum HOM05D008285 ORTHO05D010431 1.6e-20 102.1 53 96.2
CAN.G213.15 Capsicum annuum HOM05D008285 ORTHO05D010431 7.4e-18 93.2 58 81.0
CAN.G262.5 Capsicum annuum HOM05D008285 ORTHO05D010431 1.3e-17 92.4 52 90.4
PGSC0003DMG400000878 Solanum tuberosum HOM05D008285 ORTHO05D010431 2.9e-14 81.3 56 75.0
SalBow1G4672 Salvia bowleyana HOM05D008285 ORTHO05D010431 8.5e-14 79.7 55 74.5
SalBow1G6462 Salvia bowleyana HOM05D008285 ORTHO05D010431 8.5e-14 79.7 55 74.5
Hma1.2p1_0859F.1_g229500 Hydrangea macrophylla HOM05D008285 ORTHO05D010431 1.1e-13 79.3 53 75.5
RcHm_v2.0_CPg0502841 Rosa chinensis HOM05D008285 ORTHO05D010431 1.4e-13 79.0 47 83.0
PGR111G0120 Punica granatum HOM05D008285 ORTHO05D010431 3.2e-13 77.8 47 80.9
Gohir.1Z049931 Gossypium hirsutum HOM05D008285 ORTHO05D010431 4.2e-13 77.4 47 78.7
Gohir.A02G134106 Gossypium hirsutum HOM05D008285 ORTHO05D010431 4.2e-13 77.4 47 78.7
Gorai.009G442800 Gossypium raimondii HOM05D008285 ORTHO05D010431 4.2e-13 77.4 47 78.7
CSS0043912 Camellia sinensis var. sinensis HOM05D008285 ORTHO05D010431 5.5e-13 77.0 53 73.6
Nn031s41612 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.5e-13 77.0 47 80.9
Nn064s42214 Nelumbo nucifera HOM05D008285 ORTHO05D010431 5.5e-13 77.0 47 80.9
RcHm_v2.0_Chr4g0421191 Rosa chinensis HOM05D008285 ORTHO05D010431 7.2e-13 76.6 47 80.9
Gohir.1Z049481 Gossypium hirsutum HOM05D008285 ORTHO05D010431 9.4e-13 76.3 47 78.7
PSO548G0110 Papaver somniferum HOM05D008285 ORTHO05D010431 9.4e-13 76.3 53 75.5
Gohir.A01G140110 Gossypium hirsutum HOM05D008285 ORTHO05D010431 1.6e-12 75.5 47 76.6
BolC9t56929H Brassica oleracea HOM05D008285 ORTHO05D010431 2.1e-12 75.1 47 78.7
Nn8g41105 Nelumbo nucifera HOM05D008285 ORTHO05D010431 2.7e-12 74.7 47 76.6
ATCG01020 Arabidopsis thaliana HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
C09p40390 Brassica napus HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BolSC29t60502H Brassica oleracea HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BolSC35t60700H Brassica oleracea HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BolSC44t60819H Brassica oleracea HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BraSC103t45425Z Brassica rapa HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BraSC138t45538Z Brassica rapa HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BraSC25t45906Z Brassica rapa HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
BraSC59t46547Z Brassica rapa HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
Gohir.A12G229600 Gossypium hirsutum HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 74.5
Manes.18G138300 Manihot esculenta HOM05D008285 ORTHO05D010431 3.6e-12 74.3 47 78.7
C02p28770 Brassica napus HOM05D008285 ORTHO05D010431 7.9e-12 73.2 56 71.4
BolC2t08924H Brassica oleracea HOM05D008285 ORTHO05D010431 7.9e-12 73.2 56 71.4
HanXRQCPg0580381 Helianthus annuus HOM05D008285 ORTHO05D010431 7.9e-12 73.2 54 72.2
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 7.9e-12 73.2 47 76.6
PSO063G2603 Papaver somniferum HOM05D008285 ORTHO05D010431 1.0e-11 72.8 49 71.4
Nn212s45209 Nelumbo nucifera HOM05D008285 ORTHO05D010431 1.4e-11 72.4 48 79.2
Aqoxy1G03262 Aquilegia oxysepala HOM05D008285 ORTHO05D010431 1.8e-11 72.0 56 64.3
BolC9t56809H Brassica oleracea HOM05D008285 ORTHO05D010431 2.3e-11 71.6 47 76.6
PSO339G5238 Papaver somniferum HOM05D008285 ORTHO05D010431 2.3e-11 71.6 49 69.4
CARHR282410 Cardamine hirsuta HOM05D008285 ORTHO05D010431 3.0e-11 71.2 47 78.7
Nitab4.5_0015353g0010 Nicotiana tabacum HOM05D008285 ORTHO05D010431 6.7e-11 70.1 45 80.0
Solyc03g013610.1 Solanum lycopersicum HOM05D008285 ORTHO05D010431 6.7e-11 70.1 56 67.9
DCAR_032534 Daucus carota HOM05D008285 ORTHO05D010431 8.8e-11 69.7 55 70.9
SGA_v2.0_scaffold36G14477 Striga asiatica HOM05D008285 ORTHO05D010431 1.1e-10 69.3 55 65.5
Nn1g08636 Nelumbo nucifera HOM05D008285 ORTHO05D010431 3.3e-10 67.8 47 72.3
Medtr4g006140 Medicago truncatula HOM05D008285 ORTHO05D010431 2.2e-09 65.1 44 72.7
BolC2t10592H Brassica oleracea HOM05D008285 ORTHO05D010431 2.8e-09 64.7 43 74.4
Potri.009G163200 Populus trichocarpa HOM05D008285 ORTHO05D010431 2.8e-09 64.7 47 70.2
Lalb_Chr07g0191721 Lupinus albus HOM05D008285 ORTHO05D010431 3.7e-09 64.3 48 70.8
BolSC45t60913H Brassica oleracea HOM05D008285 ORTHO05D010431 1.8e-08 62.0 48 72.9
Psat5g142800 Pisum sativum HOM05D008285 ORTHO05D010431 1.2e-07 59.3 46 65.2
SMO230G0005 Selaginella moellendorffii HOM05D008285 ORTHO05D010431 8.5e-06 53.1 53 49.1


User provided reference genes

Program Settings