Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1313.3 Capsicum annuum HOM05D000110 ORTHO05D000024 2.4e-78 295.8 192 100.0
Solyc09g010680.3 Solanum lycopersicum HOM05D000110 ORTHO05D000024 2.8e-55 219.2 147 87.1
Sopen09g005390 Solanum pennellii HOM05D000110 ORTHO05D000024 1.7e-52 209.9 138 89.1
PGSC0003DMG400008914 Solanum tuberosum HOM05D000110 ORTHO05D000024 7.9e-50 201.1 139 84.9
Nitab4.5_0000761g0090 Nicotiana tabacum HOM05D000110 ORTHO05D000024 9.4e-43 177.6 134 78.4
Nitab4.5_0008520g0010 Nicotiana tabacum HOM05D000110 ORTHO05D000024 1.3e-39 167.2 125 76.8
Peaxi162Scf00165g01722 Petunia axillaris HOM05D000110 ORTHO05D000024 3.1e-38 162.5 144 70.8
Nitab4.5_0000349g0180 Nicotiana tabacum HOM05D000110 ORTHO05D000024 4.7e-18 95.5 127 50.4
Oeu036157.1 Olea europaea HOM05D000110 ORTHO05D000024 6.1e-18 95.1 132 48.5
Peaxi162Scf00330g00006 Petunia axillaris HOM05D000110 ORTHO05D000024 6.1e-18 95.1 127 51.2
Nitab4.5_0000527g0190 Nicotiana tabacum HOM05D000110 ORTHO05D000024 3.0e-17 92.8 127 50.4
Manes.08G077701 Manihot esculenta HOM05D000110 ORTHO05D000024 1.5e-16 90.5 134 52.2
Oeu049234.1 Olea europaea HOM05D000110 ORTHO05D000024 2.6e-16 89.7 135 54.1
Cc06_g02740 Coffea canephora HOM05D000110 ORTHO05D000024 3.7e-15 85.9 135 48.1
MSTRG.5672 Avicennia marina HOM05D000110 ORTHO05D000024 4.9e-15 85.5 135 49.6
Atru.chr8.1959 Acer truncatum HOM05D000110 ORTHO05D000024 1.1e-14 84.3 131 53.4
Thecc.05G041300 Theobroma cacao HOM05D000110 ORTHO05D000024 1.1e-14 84.3 130 49.2
Hma1.2p1_1513F.1_g288090 Hydrangea macrophylla HOM05D000110 ORTHO05D000024 1.8e-14 83.6 157 45.2
Oeu035511.1 Olea europaea HOM05D000110 ORTHO05D000024 4.1e-14 82.4 134 51.5
Duzib093G0439 Durio zibethinus HOM05D000110 ORTHO05D000024 1.6e-13 80.5 130 48.5
Cfa017399 Carpinus fangiana HOM05D000110 ORTHO05D000024 2.0e-13 80.1 135 45.9
SalBow4G3144 Salvia bowleyana HOM05D000110 ORTHO05D000024 2.7e-13 79.7 137 46.7
DCAR_017873 Daucus carota HOM05D000110 ORTHO05D000024 7.8e-13 78.2 147 47.6
GSVIVG01034189001 Vitis vinifera HOM05D000110 ORTHO05D000024 7.8e-13 78.2 132 46.2
PGR004G0288 Punica granatum HOM05D000110 ORTHO05D000024 1.0e-12 77.8 132 51.5
Solyc10g086440.2 Solanum lycopersicum HOM05D000110 ORTHO05D000024 2.3e-12 76.6 129 46.5
Nn5g26935 Nelumbo nucifera HOM05D000110 ORTHO05D000024 3.8e-12 75.9 134 44.8
Haze_20767 Corylus avellana HOM05D000110 ORTHO05D000024 5.0e-12 75.5 135 45.9
Duzib106G1846 Durio zibethinus HOM05D000110 ORTHO05D000024 5.0e-12 75.5 146 43.8
Duzib128G0630 Durio zibethinus HOM05D000110 ORTHO05D000024 5.0e-12 75.5 130 46.9
Ca_20025_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 6.6e-12 75.1 157 41.4
SalBow3G2742 Salvia bowleyana HOM05D000110 ORTHO05D000024 3.3e-11 72.8 138 47.1
MSTRG.10263 Avicennia marina HOM05D000110 ORTHO05D000024 4.3e-11 72.4 145 42.8
Sopen10g035820 Solanum pennellii HOM05D000110 ORTHO05D000024 4.3e-11 72.4 129 45.0
Oeu024355.1 Olea europaea HOM05D000110 ORTHO05D000024 5.6e-11 72.0 132 44.7
CiPaw.09G191200 Carya illinoinensis HOM05D000110 ORTHO05D000024 1.6e-10 70.5 137 44.5
Gohir.D04G120600 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.1e-10 70.1 134 44.0
Nn2g10389 Nelumbo nucifera HOM05D000110 ORTHO05D000024 2.1e-10 70.1 134 44.0
PGSC0003DMG400019155 Solanum tuberosum HOM05D000110 ORTHO05D000024 2.1e-10 70.1 132 44.7
Gorai.012G103400 Gossypium raimondii HOM05D000110 ORTHO05D000024 3.6e-10 69.3 134 44.0
MSTRG.19090 Avicennia marina HOM05D000110 ORTHO05D000024 4.7e-10 68.9 137 46.0
Cpa.g.sc188.14 Carica papaya HOM05D000110 ORTHO05D000024 6.1e-10 68.6 144 50.7
QL07p048023 Quercus lobata HOM05D000110 ORTHO05D000024 8.0e-10 68.2 132 43.9
QL07p048067 Quercus lobata HOM05D000110 ORTHO05D000024 8.0e-10 68.2 132 43.9
Gorai.006G173700 Gossypium raimondii HOM05D000110 ORTHO05D000024 1.0e-09 67.8 108 45.4
MBI05_g43546_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 1.8e-09 67.0 130 41.5
CAN.G530.8 Capsicum annuum HOM05D000110 ORTHO05D000024 2.3e-09 66.6 133 42.1
Gohir.A09G156900 Gossypium hirsutum HOM05D000110 ORTHO05D000024 2.3e-09 66.6 108 45.4
TAR633G2140 Trochodendron aralioides HOM05D000110 ORTHO05D000024 2.3e-09 66.6 134 40.3
TAR623G1414 Trochodendron aralioides HOM05D000110 ORTHO05D000024 3.1e-09 66.2 148 38.5
DCAR_014844 Daucus carota HOM05D000110 ORTHO05D000024 4.0e-09 65.9 134 45.5
Gohir.D09G152200 Gossypium hirsutum HOM05D000110 ORTHO05D000024 5.2e-09 65.5 108 44.4
Phvul.010G013500 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 5.2e-09 65.5 156 37.8
Aqoxy4G02948 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 6.8e-09 65.1 133 42.9
Oeu060032.1 Olea europaea HOM05D000110 ORTHO05D000024 6.8e-09 65.1 147 40.1
Aqoxy2G02098 Aquilegia oxysepala HOM05D000110 ORTHO05D000024 1.5e-08 63.9 129 36.4
Gohir.A04G082100 Gossypium hirsutum HOM05D000110 ORTHO05D000024 4.4e-08 62.4 134 41.8
Potri.006G084200 Populus trichocarpa HOM05D000110 ORTHO05D000024 4.4e-08 62.4 109 45.0
MBI14_g31250_MAGBIO Magnolia biondii HOM05D000110 ORTHO05D000024 5.8e-08 62.0 148 42.6
Sabra10G0158400 Salix brachista HOM05D000110 ORTHO05D000024 5.8e-08 62.0 140 40.7
Potri.010G205400 Populus trichocarpa HOM05D000110 ORTHO05D000024 7.5e-08 61.6 139 39.6
Actinidia13140 Actinidia chinensis HOM05D000110 ORTHO05D000024 1.3e-07 60.8 119 43.7
Atru.chr12.458 Acer truncatum HOM05D000110 ORTHO05D000024 1.7e-07 60.5 156 39.1
Phvul.008G099400 Phaseolus vulgaris HOM05D000110 ORTHO05D000024 1.7e-07 60.5 144 41.0
Lj3g0020567 Lotus japonicus HOM05D000110 ORTHO05D000024 2.9e-07 59.7 145 40.0
Sabra08G0039700 Salix brachista HOM05D000110 ORTHO05D000024 2.9e-07 59.7 153 35.9
VMungo1383G0063 Vigna mungo HOM05D000110 ORTHO05D000024 3.7e-07 59.3 146 41.1
CiPaw.10G145100 Carya illinoinensis HOM05D000110 ORTHO05D000024 4.9e-07 58.9 136 38.2
Glyma.08G358100 Glycine max HOM05D000110 ORTHO05D000024 6.4e-07 58.5 140 42.1
VMungo0331G1263 Vigna mungo HOM05D000110 ORTHO05D000024 6.4e-07 58.5 157 36.3
Lalb_Chr03g0042091 Lupinus albus HOM05D000110 ORTHO05D000024 1.1e-06 57.8 157 42.0
RcHm_v2.0_Chr3g0466831 Rosa chinensis HOM05D000110 ORTHO05D000024 1.1e-06 57.8 158 34.8
Actinidia05308 Actinidia chinensis HOM05D000110 ORTHO05D000024 1.9e-06 57.0 119 43.7
FAN05G3383 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.4e-06 56.6 163 34.4
FAN09G3330 Fragaria x ananassa HOM05D000110 ORTHO05D000024 2.4e-06 56.6 163 34.4
BcaNung02131 Brassica carinata HOM05D000110 ORTHO05D000024 3.2e-06 56.2 141 40.4
C09p74130 Brassica napus HOM05D000110 ORTHO05D000024 3.2e-06 56.2 141 40.4
BolC9t60144H Brassica oleracea HOM05D000110 ORTHO05D000024 3.2e-06 56.2 141 40.4
TAR369G0841 Trochodendron aralioides HOM05D000110 ORTHO05D000024 3.2e-06 56.2 129 39.5
CSS0011843 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.1e-06 55.8 131 42.0
CSS0037953 Camellia sinensis var. sinensis HOM05D000110 ORTHO05D000024 4.1e-06 55.8 131 42.0
CDE04G1426 Ceratophyllum demersum HOM05D000110 ORTHO05D000024 5.4e-06 55.5 131 39.7
Medtr4g022370 Medicago truncatula HOM05D000110 ORTHO05D000024 5.4e-06 55.5 175 37.1
Ca_00862_v3 Cicer arietinum L. HOM05D000110 ORTHO05D000024 7.0e-06 55.1 159 38.4
Dinv35617 Davidia involucrata HOM05D000110 ORTHO05D000024 7.0e-06 55.1 135 40.0
Thhalv10014056m.g Eutrema salsugineum HOM05D000110 ORTHO05D000024 7.0e-06 55.1 164 36.6
Sabra06G0063900 Salix brachista HOM05D000110 ORTHO05D000024 7.0e-06 55.1 109 41.3
BcaB05g21889 Brassica carinata HOM05D000110 ORTHO05D000024 9.2e-06 54.7 151 37.1
Carub.0006s0126 Capsella rubella HOM05D000110 ORTHO05D000024 9.2e-06 54.7 156 34.0
COL.COLO4_15013 Corchorus olitorius HOM05D000110 ORTHO05D000024 9.2e-06 54.7 135 39.3
QL08p059221 Quercus lobata HOM05D000110 ORTHO05D000024 9.2e-06 54.7 127 38.6


User provided reference genes

Program Settings