Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1305.17 Capsicum annuum HOM05D006179 ORTHO05D008370 3.7e-171 604.7 297 100.0
Sopen12g034430 Solanum pennellii HOM05D006179 ORTHO05D008370 5.2e-133 478.0 299 80.6
Solyc12g099800.2 Solanum lycopersicum HOM05D006179 ORTHO05D008370 5.8e-132 474.6 299 79.6
PGSC0003DMG401004716 Solanum tuberosum HOM05D006179 ORTHO05D008370 3.2e-114 415.6 237 85.7
Nitab4.5_0001290g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 8.1e-110 401.0 279 73.1
Nitab4.5_0002310g0120 Nicotiana tabacum HOM05D006179 ORTHO05D008370 7.6e-108 394.4 310 69.0
Peaxi162Scf00272g00828 Petunia axillaris HOM05D006179 ORTHO05D008370 1.3e-104 383.6 298 68.5
Oeu061700.1 Olea europaea HOM05D006179 ORTHO05D008370 6.6e-104 381.3 308 67.9
CANSAT54G1770 Cannabis sativa HOM05D006179 ORTHO05D008370 2.8e-102 375.9 310 63.9
RcHm_v2.0_Chr5g0050451 Rosa chinensis HOM05D006179 ORTHO05D008370 6.2e-102 374.8 279 69.9
CiPaw.14G111900 Carya illinoinensis HOM05D006179 ORTHO05D008370 1.4e-101 373.6 277 68.6
Migut.D00669 Erythranthe guttata HOM05D006179 ORTHO05D008370 3.1e-101 372.5 291 66.3
Potri.009G069300 Populus trichocarpa HOM05D006179 ORTHO05D008370 3.1e-101 372.5 272 69.5
Hma1.2p1_0470F.1_g159226 Hydrangea macrophylla HOM05D006179 ORTHO05D008370 5.3e-101 371.7 301 64.5
SGA_v2.0_scaffold8G04541 Striga asiatica HOM05D006179 ORTHO05D008370 1.2e-100 370.5 238 76.5
PGR119G2402 Punica granatum HOM05D006179 ORTHO05D008370 2.0e-100 369.8 313 62.0
GSVIVG01037292001 Vitis vinifera HOM05D006179 ORTHO05D008370 2.6e-100 369.4 279 66.7
CSS0020940 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 4.4e-100 368.6 308 64.0
Cc00_g17410 Coffea canephora HOM05D006179 ORTHO05D008370 4.4e-100 368.6 241 73.4
Glyma.02G279000 Glycine max HOM05D006179 ORTHO05D008370 7.6e-100 367.9 299 62.9
Prupe.4G263800 Prunus persica HOM05D006179 ORTHO05D008370 9.9e-100 367.5 279 66.7
Glyma.14G035700 Glycine max HOM05D006179 ORTHO05D008370 1.3e-99 367.1 226 76.1
SalBow6G4024 Salvia bowleyana HOM05D006179 ORTHO05D008370 2.2e-99 366.3 303 64.0
Gohir.A07G121100 Gossypium hirsutum HOM05D006179 ORTHO05D008370 2.9e-99 365.9 227 77.1
Gohir.D07G125300 Gossypium hirsutum HOM05D006179 ORTHO05D008370 2.9e-99 365.9 227 77.1
COL.COLO4_24491 Corchorus olitorius HOM05D006179 ORTHO05D008370 8.4e-99 364.4 303 61.7
Cfa009884 Carpinus fangiana HOM05D006179 ORTHO05D008370 1.4e-98 363.6 302 61.9
Atru.chr3.2957 Acer truncatum HOM05D006179 ORTHO05D008370 2.4e-98 362.8 285 64.9
HanXRQChr13g0390131 Helianthus annuus HOM05D006179 ORTHO05D008370 3.2e-98 362.5 309 65.0
QL01p016926 Quercus lobata HOM05D006179 ORTHO05D008370 3.2e-98 362.5 300 62.3
TPR.G16411 Trifolium pratense HOM05D006179 ORTHO05D008370 3.2e-98 362.5 226 76.5
EL10Ac4g10106 Beta vulgaris HOM05D006179 ORTHO05D008370 7.1e-98 361.3 274 67.5
MD11G1184200 Malus domestica HOM05D006179 ORTHO05D008370 7.1e-98 361.3 304 63.2
LjContig00564g0004002 Lotus japonicus HOM05D006179 ORTHO05D008370 1.2e-97 360.5 226 75.7
Sc16g0011000 Simmondsia chinensis HOM05D006179 ORTHO05D008370 1.2e-97 360.5 216 79.6
arahy.Tifrunner.gnm1.ann1.66DN5N Arachis hypogaea HOM05D006179 ORTHO05D008370 2.7e-97 359.4 230 73.9
Lalb_Chr04g0249261 Lupinus albus HOM05D006179 ORTHO05D008370 7.8e-97 357.8 231 73.2
FvH4_3g27810 Fragaria vesca HOM05D006179 ORTHO05D008370 1.3e-96 357.1 259 70.3
TWI79G0794 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.3e-96 357.1 273 66.7
TWI31G1173 Tripterygium wilfordii HOM05D006179 ORTHO05D008370 1.7e-96 356.7 286 64.3
Medtr5g089330 Medicago truncatula HOM05D006179 ORTHO05D008370 2.3e-96 356.3 228 76.3
Hund21973 Selenicereus undatus HOM05D006179 ORTHO05D008370 3.0e-96 355.9 226 74.8
vmacro14276 Vaccinium macrocarpon HOM05D006179 ORTHO05D008370 5.1e-96 355.1 291 62.9
PSO384G2846 Papaver somniferum HOM05D006179 ORTHO05D008370 6.6e-96 354.8 225 75.1
VMungo0647G1137 Vigna mungo HOM05D006179 ORTHO05D008370 6.6e-96 354.8 226 75.2
ClCG02G022800 Citrullus lanatus HOM05D006179 ORTHO05D008370 8.7e-96 354.4 281 64.4
Nn2g14782 Nelumbo nucifera HOM05D006179 ORTHO05D008370 8.7e-96 354.4 235 74.5
arahy.Tifrunner.gnm1.ann1.0RM1GA Arachis hypogaea HOM05D006179 ORTHO05D008370 1.1e-95 354.0 236 72.5
PSO339G0647 Papaver somniferum HOM05D006179 ORTHO05D008370 1.1e-95 354.0 285 63.9
Phvul.008G201800 Phaseolus vulgaris HOM05D006179 ORTHO05D008370 1.1e-95 354.0 226 74.8
Ah.04g159740 Amaranthus hybridus HOM05D006179 ORTHO05D008370 1.5e-95 353.6 218 76.6
Aqoxy1G00395 Aquilegia oxysepala HOM05D006179 ORTHO05D008370 2.5e-95 352.8 252 67.1
Rhsim01G0195300 Rhododendron simsii HOM05D006179 ORTHO05D008370 2.5e-95 352.8 304 61.5
TAR623G0610 Trochodendron aralioides HOM05D006179 ORTHO05D008370 2.5e-95 352.8 272 65.8
Psat2g020720 Pisum sativum HOM05D006179 ORTHO05D008370 3.3e-95 352.4 226 74.3
FAN25G1664 Fragaria x ananassa HOM05D006179 ORTHO05D008370 4.3e-95 352.1 259 69.9
unitig_62.g23875 Utricularia gibba HOM05D006179 ORTHO05D008370 4.3e-95 352.1 218 76.6
Sabra09G0052200 Salix brachista HOM05D006179 ORTHO05D008370 5.6e-95 351.7 348 56.3
Ca_06199_v3 Cicer arietinum L. HOM05D006179 ORTHO05D008370 7.3e-95 351.3 227 73.1
AUR62000204 Chenopodium quinoa HOM05D006179 ORTHO05D008370 1.6e-94 350.1 216 75.9
Sed0005347 Sechium edule HOM05D006179 ORTHO05D008370 1.6e-94 350.1 234 70.5
Gorai.001G135100 Gossypium raimondii HOM05D006179 ORTHO05D008370 6.2e-94 348.2 218 76.6
Lj2C622G16 Lonicera japonica HOM05D006179 ORTHO05D008370 1.8e-93 346.7 302 60.3
ATR0621G006 Amborella trichopoda HOM05D006179 ORTHO05D008370 2.6e-92 342.8 221 73.3
AUR62006552 Chenopodium quinoa HOM05D006179 ORTHO05D008370 5.8e-92 341.7 227 71.8
Haze_23248 Corylus avellana HOM05D006179 ORTHO05D008370 1.3e-91 340.5 292 59.6
Thecc.09G246900 Theobroma cacao HOM05D006179 ORTHO05D008370 2.9e-91 339.3 356 53.7
Nn7g36750 Nelumbo nucifera HOM05D006179 ORTHO05D008370 2.4e-90 336.3 214 73.4
Os07g0687500 Oryza sativa ssp. japonica HOM05D006179 ORTHO05D008370 2.4e-90 336.3 287 61.7
CDE02G1620 Ceratophyllum demersum HOM05D006179 ORTHO05D008370 9.3e-90 334.3 276 62.0
Zm00001eb331180 Zea mays HOM05D006179 ORTHO05D008370 1.2e-89 334.0 219 72.1
Cpa.g.sc157.57 Carica papaya HOM05D006179 ORTHO05D008370 3.5e-89 332.4 289 60.6
TPR.G16393 Trifolium pratense HOM05D006179 ORTHO05D008370 2.1e-86 323.2 227 68.7
Atru.chr3.2952 Acer truncatum HOM05D006179 ORTHO05D008370 1.1e-85 320.9 258 65.1
Duzib170G0239 Durio zibethinus HOM05D006179 ORTHO05D008370 1.1e-85 320.9 226 71.2
FAN21G1036 Fragaria x ananassa HOM05D006179 ORTHO05D008370 5.3e-85 318.5 276 63.0
Lsat_1_v5_gn_5_65341 Lactuca sativa HOM05D006179 ORTHO05D008370 1.2e-84 317.4 282 62.4
CARHR193590 Cardamine hirsuta HOM05D006179 ORTHO05D008370 9.9e-84 314.3 234 65.4
FAN11G2659 Fragaria x ananassa HOM05D000059 ORTHO05D008370 3.8e-83 312.4 232 69.4
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 2.5e-82 309.7 234 65.4
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 2.5e-82 309.7 234 65.8
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 2.5e-82 309.7 234 65.8
DCAR_024400 Daucus carota HOM05D006179 ORTHO05D008370 3.2e-82 309.3 215 68.8
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 4.2e-82 308.9 233 64.8
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 7.1e-82 308.1 225 66.7
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 9.3e-82 307.8 235 65.1
HPP92_028459 Vanilla planifolia HOM05D006179 ORTHO05D008370 1.2e-81 307.4 183 75.4
Sp6g25040 Schrenkiella parvula HOM05D006179 ORTHO05D008370 2.1e-81 306.6 225 67.6
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 4.6e-81 305.4 234 65.0
THA.LOC104811194 Tarenaya hassleriana HOM05D006179 ORTHO05D008370 6.0e-81 305.1 219 63.9
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 3.0e-80 302.8 233 64.8
A02p05510 Brassica napus HOM05D006179 ORTHO05D008370 6.7e-80 301.6 225 65.8
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 3.3e-79 299.3 226 65.5
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 2.8e-78 296.2 225 64.9
BraA02t05502Z Brassica rapa HOM05D006179 ORTHO05D008370 1.8e-77 293.5 249 59.4
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 6.9e-77 291.6 233 63.1
Mapoly0003s0043 Marchantia polymorpha HOM05D006179 ORTHO05D008370 1.0e-75 287.7 292 52.4
MELO3C014557.2 Cucumis melo HOM05D006179 ORTHO05D008370 7.1e-74 281.6 235 61.7
BNapus_Darmor_BZH_scaffold_38p02550 Brassica napus HOM05D006179 ORTHO05D008370 9.3e-74 281.2 217 64.1
Eucgr.J00687 Eucalyptus grandis HOM05D006179 ORTHO05D008370 7.9e-73 278.1 151 83.4
SMO145G0007 Selaginella moellendorffii HOM05D006179 ORTHO05D008370 1.8e-72 276.9 223 60.1
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 4.3e-71 272.3 179 69.8
CsaV3_6G038930 Cucumis sativus L. HOM05D006179 ORTHO05D008370 9.7e-71 271.2 217 64.1
Pp3c3_13280 Physcomitrium patens HOM05D006179 ORTHO05D008370 8.2e-70 268.1 217 59.0
Ciclev10017644m.g Citrus clementina HOM05D006179 ORTHO05D008370 1.1e-69 267.7 151 79.5
AagrBONN_evm.TU.Sc2ySwM_117.3174 Anthoceros agrestis HOM05D006179 ORTHO05D008370 8.5e-67 258.1 230 53.9
Peaxi162Scf00174g00223 Petunia axillaris HOM05D006179 ORTHO05D008370 6.1e-65 251.9 155 80.6
ECA233G4787 Erigeron canadensis HOM05D006179 ORTHO05D008370 6.7e-64 248.4 143 80.4
CBR_g54969 Chara braunii HOM05D006179 ORTHO05D008370 4.8e-62 242.3 269 49.1
Dinv36157 Davidia involucrata HOM05D006179 ORTHO05D008370 2.8e-54 216.5 232 55.2
SEGI_16296 Sequoiadendron giganteum HOM05D006179 ORTHO05D008370 1.8e-53 213.8 150 64.7
Manes.02G138400 Manihot esculenta HOM05D006179 ORTHO05D008370 1.3e-51 207.6 141 73.0
Hund21974 Selenicereus undatus HOM05D006179 ORTHO05D008240 1.0e-48 198.0 172 61.6
AUR62040469 Chenopodium quinoa HOM05D006179 ORTHO05D008370 3.9e-48 196.1 140 67.9
AUR62037598 Chenopodium quinoa HOM05D006179 ORTHO05D007344 1.2e-41 174.5 138 65.9
AUR62042212 Chenopodium quinoa HOM05D006179 ORTHO05D008370 9.7e-39 164.9 144 57.6
Cre07.g350400 Chlamydomonas reinhardtii HOM05D006179 ORTHO05D008370 3.7e-38 162.9 182 39.0
MCO13G336 Micromonas commoda HOM05D006179 ORTHO05D008370 1.2e-31 141.4 202 39.1
SalBow6G2129 Salvia bowleyana HOM05D006179 ORTHO05D353266 1.1e-29 134.8 149 57.0
CSS0040434 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 5.4e-21 105.9 137 46.0
CSS0040024 Camellia sinensis var. sinensis HOM05D006179 ORTHO05D008370 1.2e-17 94.7 71 64.8
QL02p019212 Quercus lobata HOM05D006179 ORTHO05D008370 1.5e-10 71.2 36 83.3
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 5.2e-08 62.8 101 32.7
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 1.2e-07 61.6 125 30.4
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.5e-07 61.2 101 32.7
MCO16G521 Micromonas commoda HOM05D005637 ORTHO05D006983 1.5e-07 61.2 100 37.0
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 5.8e-07 59.3 100 32.0
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 5.8e-07 59.3 102 33.3
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 7.5e-07 58.9 100 32.0
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 7.5e-07 58.9 101 32.7
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 1.7e-06 57.8 97 32.0
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 2.2e-06 57.4 95 31.6
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 2.2e-06 57.4 101 31.7
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 2.9e-06 57.0 127 29.9
Haze_26617 Corylus avellana HOM05D006179 ORTHO05D164269 3.7e-06 56.6 93 36.6
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 3.7e-06 56.6 101 30.7
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 4.9e-06 56.2 101 33.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 4.9e-06 56.2 105 30.5
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 4.9e-06 56.2 126 29.4
Eucgr.G02481 Eucalyptus grandis HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4
FvH4_4g30970 Fragaria vesca HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4
FAN07G0507 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4
FAN12G2219 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4
FAN17G1506 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4
FAN22G0476 Fragaria x ananassa HOM05D005637 ORTHO05D006983 8.3e-06 55.5 58 41.4


User provided reference genes

Program Settings