Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G130.11 Capsicum annuum HOM05D005314 ORTHO05D006522 2.5e-187 658.7 345 100.0
Sopen06g012940 Solanum pennellii HOM05D005314 ORTHO05D006522 1.1e-179 633.3 345 95.9
Solyc06g036780.3 Solanum lycopersicum HOM05D005314 ORTHO05D006522 1.5e-179 632.9 345 95.9
Peaxi162Scf01088g00005 Petunia axillaris HOM05D005314 ORTHO05D006522 1.5e-163 579.7 325 92.0
SalBow4G3021 Salvia bowleyana HOM05D005314 ORTHO05D006522 1.3e-154 550.1 345 82.9
Migut.A00114 Erythranthe guttata HOM05D005314 ORTHO05D006522 1.1e-153 547.0 345 81.7
MSTRG.25961 Avicennia marina HOM05D005314 ORTHO05D006522 2.6e-152 542.3 345 81.7
Prupe.1G409300 Prunus persica HOM05D005314 ORTHO05D006522 3.8e-151 538.5 345 80.0
Cc08_g10890 Coffea canephora HOM05D005314 ORTHO05D006522 6.4e-151 537.7 345 80.9
Dinv22878 Davidia involucrata HOM05D005314 ORTHO05D006522 9.3e-150 533.9 345 80.0
CSS0005464 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.3e-148 529.3 346 79.8
Actinidia30326 Actinidia chinensis HOM05D005314 ORTHO05D006522 5.1e-148 528.1 346 80.1
Lsat_1_v5_gn_6_14601 Lactuca sativa HOM05D005314 ORTHO05D006522 6.7e-148 527.7 345 79.4
ECA233G4949 Erigeron canadensis HOM05D005314 ORTHO05D006522 8.7e-148 527.3 347 79.3
QL02p000736 Quercus lobata HOM05D005314 ORTHO05D006522 1.1e-147 526.9 344 78.5
FvH4_2g31600 Fragaria vesca HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 79.1
MD15G1056700 Malus domestica HOM05D005314 ORTHO05D006522 3.3e-147 525.4 345 78.6
Cfa017974 Carpinus fangiana HOM05D005314 ORTHO05D006522 4.3e-147 525.0 345 77.7
TAR369G0158 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.6e-147 523.9 345 79.1
TAR636G1106 Trochodendron aralioides HOM05D005314 ORTHO05D006522 9.6e-147 523.9 345 79.1
Haze_18156 Corylus avellana HOM05D005314 ORTHO05D006522 1.3e-146 523.5 345 77.7
RcHm_v2.0_Chr6g0311221 Rosa chinensis HOM05D005314 ORTHO05D006522 2.1e-146 522.7 345 79.1
CANSAT25G2280 Cannabis sativa HOM05D005314 ORTHO05D006522 2.8e-146 522.3 347 79.0
SGA_v2.0_scaffold20G09204 Striga asiatica HOM05D005314 ORTHO05D006522 8.1e-146 520.8 392 72.2
MD08G1064900 Malus domestica HOM05D005314 ORTHO05D006522 1.4e-145 520.0 345 78.0
CsaV3_4G035770 Cucumis sativus L. HOM05D005314 ORTHO05D006522 5.3e-145 518.1 345 77.1
Thecc.09G057100 Theobroma cacao HOM05D005314 ORTHO05D006522 6.9e-145 517.7 345 77.1
GSVIVG01035376001 Vitis vinifera HOM05D005314 ORTHO05D006522 2.6e-144 515.8 348 78.2
AUR62009122 Chenopodium quinoa HOM05D005314 ORTHO05D006522 5.8e-144 514.6 343 76.1
CiPaw.15G037000 Carya illinoinensis HOM05D005314 ORTHO05D006522 7.6e-144 514.2 345 75.9
Hma1.2p1_0544F.1_g175630 Hydrangea macrophylla HOM05D005314 ORTHO05D006522 1.3e-143 513.5 344 78.5
Gorai.013G220600 Gossypium raimondii HOM05D005314 ORTHO05D006522 2.2e-143 512.7 345 75.7
BcaNung02637 Brassica carinata HOM05D005314 ORTHO05D006522 2.9e-143 512.3 343 75.2
COL.COLO4_21084 Corchorus olitorius HOM05D005314 ORTHO05D006522 2.9e-143 512.3 345 77.4
Gohir.D13G194600 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.9e-143 512.3 345 75.7
Manes.03G050000 Manihot esculenta HOM05D005314 ORTHO05D006522 3.8e-143 511.9 345 77.1
PGR044G2019 Punica granatum HOM05D005314 ORTHO05D006522 3.8e-143 511.9 346 76.6
Eucgr.C03058 Eucalyptus grandis HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 76.2
Potri.018G060500 Populus trichocarpa HOM05D005314 ORTHO05D006522 1.1e-142 510.4 345 77.1
CiPaw.16G027100 Carya illinoinensis HOM05D005314 ORTHO05D006522 1.4e-142 510.0 345 76.2
Rhsim11G0042200 Rhododendron simsii HOM05D005314 ORTHO05D006522 1.4e-142 510.0 367 75.5
HanXRQChr08g0226511 Helianthus annuus HOM05D005314 ORTHO05D006522 2.4e-142 509.2 345 77.1
Ca_13152_v3 Cicer arietinum L. HOM05D005314 ORTHO05D006522 4.2e-142 508.4 345 76.8
PSO210G6435 Papaver somniferum HOM05D005314 ORTHO05D006522 7.1e-142 507.7 346 76.0
Gohir.A13G187700 Gossypium hirsutum HOM05D005314 ORTHO05D006522 9.3e-142 507.3 345 75.1
C09p64870 Brassica napus HOM05D005314 ORTHO05D006522 1.2e-141 506.9 343 74.6
A10p25800 Brassica napus HOM05D005314 ORTHO05D006522 2.7e-141 505.8 343 74.3
ClCG05G017990 Citrullus lanatus HOM05D005314 ORTHO05D006522 3.5e-141 505.4 344 76.5
BolC9t59318H Brassica oleracea HOM05D005314 ORTHO05D006522 4.6e-141 505.0 343 74.3
PSO210G6321 Papaver somniferum HOM05D005314 ORTHO05D006522 4.6e-141 505.0 346 75.7
Gohir.A07G021950 Gossypium hirsutum HOM05D005314 ORTHO05D006522 7.9e-141 504.2 345 75.1
Gorai.001G022500 Gossypium raimondii HOM05D005314 ORTHO05D006522 7.9e-141 504.2 345 75.4
A02p01290 Brassica napus HOM05D005314 ORTHO05D006522 1.0e-140 503.8 343 74.3
BraA02t05108Z Brassica rapa HOM05D005314 ORTHO05D006522 1.0e-140 503.8 343 74.3
Sp6g31630 Schrenkiella parvula HOM05D005314 ORTHO05D006522 1.3e-140 503.4 343 74.3
Sed0001440 Sechium edule HOM05D005314 ORTHO05D006522 1.8e-140 503.1 345 74.8
BcaC03g13403 Brassica carinata HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 74.1
C02p05500 Brassica napus HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 74.1
BolC2t06496H Brassica oleracea HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 74.1
Thhalv10014010m.g Eutrema salsugineum HOM05D005314 ORTHO05D006522 3.0e-140 502.3 343 74.3
Lj1g0000731 Lotus japonicus HOM05D005314 ORTHO05D006522 3.0e-140 502.3 345 74.5
Nn8g38796 Nelumbo nucifera HOM05D005314 ORTHO05D006522 5.1e-140 501.5 350 76.0
Potri.006G226000 Populus trichocarpa HOM05D005314 ORTHO05D006522 6.7e-140 501.1 345 76.2
TWI32G0330 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 6.7e-140 501.1 345 76.5
FAN27G1630 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.1e-139 500.4 345 76.5
TPR.G13039 Trifolium pratense HOM05D005314 ORTHO05D006522 1.1e-139 500.4 347 75.8
TWI34G0632 Tripterygium wilfordii HOM05D005314 ORTHO05D006522 1.1e-139 500.4 345 75.7
AL6G22740 Arabidopsis lyrata HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 73.8
THA.LOC104811236 Tarenaya hassleriana HOM05D005314 ORTHO05D006522 1.9e-139 499.6 343 74.1
Carub.0006s1050 Capsella rubella HOM05D005314 ORTHO05D006522 2.5e-139 499.2 343 73.5
AT5G11960 Arabidopsis thaliana HOM05D005314 ORTHO05D006522 3.3e-139 498.8 343 73.5
Psat6g021480 Pisum sativum HOM05D005314 ORTHO05D006522 3.3e-139 498.8 345 75.9
BraA10t44644Z Brassica rapa HOM05D005314 ORTHO05D006522 1.3e-138 496.9 355 71.8
Medtr1g015820 Medicago truncatula HOM05D005314 ORTHO05D006522 1.3e-138 496.9 347 75.5
Phvul.001G037500 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 4.8e-138 495.0 345 74.2
Aqoxy7G04033 Aquilegia oxysepala HOM05D000411 ORTHO05D006522 6.2e-138 494.6 337 75.1
Glyma.06G053100 Glycine max HOM05D005314 ORTHO05D006522 6.2e-138 494.6 345 74.2
Phvul.009G078900 Phaseolus vulgaris HOM05D005314 ORTHO05D006522 5.3e-137 491.5 336 73.5
Aa31LG3G15270 Aethionema arabicum HOM05D005314 ORTHO05D006522 6.9e-137 491.1 355 71.0
Glyma.14G097400 Glycine max HOM05D005314 ORTHO05D006522 6.9e-137 491.1 351 73.8
MELO3C016882.2 Cucumis melo HOM05D005314 ORTHO05D006522 4.5e-136 488.4 345 74.2
Hund19438 Selenicereus undatus HOM05D005314 ORTHO05D006522 1.0e-135 487.3 343 73.5
Lalb_Chr11g0063171 Lupinus albus HOM05D005314 ORTHO05D006522 3.2e-134 482.3 345 72.8
VMungo0647G2045 Vigna mungo HOM05D005314 ORTHO05D006522 9.3e-134 480.7 358 71.2
ATR0789G137 Amborella trichopoda HOM05D005314 ORTHO05D006522 3.5e-133 478.8 345 70.7
Lalb_Chr22g0356141 Lupinus albus HOM05D005314 ORTHO05D006522 1.5e-131 473.4 309 78.0
Ciclev10008891m.g Citrus clementina HOM05D005314 ORTHO05D006522 2.1e-130 469.5 337 73.0
HPP92_007653 Vanilla planifolia HOM05D005314 ORTHO05D006522 3.1e-129 465.7 339 69.9
FAN15G2750 Fragaria x ananassa HOM05D005314 ORTHO05D006522 1.0e-127 460.7 313 77.3
VMungo1309G2963 Vigna mungo HOM05D005314 ORTHO05D006522 1.0e-127 460.7 336 70.8
FAN24G2134 Fragaria x ananassa HOM05D005314 ORTHO05D006522 2.2e-127 459.5 308 78.2
CDE06G1634 Ceratophyllum demersum HOM05D005314 ORTHO05D006522 1.9e-126 456.4 345 70.7
Sabra18G0054400 Salix brachista HOM05D005314 ORTHO05D006522 1.9e-126 456.4 415 62.2
MBI01_g21122_MAGBIO Magnolia biondii HOM05D005314 ORTHO05D006522 1.2e-125 453.8 336 72.0
Lj8A530G14 Lonicera japonica HOM05D005314 ORTHO05D006522 2.3e-124 449.5 295 80.3
DCAR_007733 Daucus carota HOM05D005314 ORTHO05D006522 6.7e-124 448.0 397 63.5
Atru.chr7.1939 Acer truncatum HOM05D005314 ORTHO05D006522 6.3e-122 441.4 272 81.2
Lalb_Chr14g0366381 Lupinus albus HOM05D005314 ORTHO05D006522 1.8e-121 439.9 272 80.9
Glyma.04G052700 Glycine max HOM05D005314 ORTHO05D006522 2.4e-121 439.5 308 73.7
Glyma.17G227100 Glycine max HOM05D005314 ORTHO05D006522 1.0e-119 434.1 345 68.4
Sc23g0005690 Simmondsia chinensis HOM05D005314 ORTHO05D006522 1.2e-117 427.2 343 67.3
arahy.Tifrunner.gnm1.ann1.VQ1HGR Arachis hypogaea HOM05D005314 ORTHO05D006522 4.6e-117 425.2 345 67.5
vmacro00123 Vaccinium macrocarpon HOM05D005314 ORTHO05D006522 1.0e-111 407.5 292 75.3
Nitab4.5_0000972g0030 Nicotiana tabacum HOM05D005314 ORTHO05D006522 5.0e-111 405.2 435 59.3
arahy.Tifrunner.gnm1.ann1.UTD444 Arachis hypogaea HOM05D005314 ORTHO05D006522 2.5e-110 402.9 345 64.1
Oeu003996.1 Olea europaea HOM05D005314 ORTHO05D006522 2.5e-110 402.9 328 68.9
Sabra06G0174700 Salix brachista HOM05D005314 ORTHO05D006522 2.7e-109 399.4 418 56.2
arahy.Tifrunner.gnm1.ann1.GAY7D4 Arachis hypogaea HOM05D005314 ORTHO05D006522 1.4e-108 397.1 345 63.5
Nitab4.5_0000268g0140 Nicotiana tabacum HOM05D005314 ORTHO05D006522 3.3e-107 392.5 344 66.3
Dinv28005 Davidia involucrata HOM05D005314 ORTHO05D006522 1.2e-104 384.0 222 86.0
EL10Ac2g03829 Beta vulgaris HOM05D005314 ORTHO05D006522 5.0e-103 378.6 343 61.5
unitig_88.g27677 Utricularia gibba HOM05D005314 ORTHO05D006522 2.0e-99 366.7 384 54.2
Duzib150G1607 Durio zibethinus HOM05D005314 ORTHO05D006522 1.3e-98 364.0 222 81.1
Sed0024799 Sechium edule HOM05D005314 ORTHO05D006522 3.4e-91 339.3 250 70.8
arahy.Tifrunner.gnm1.ann1.6D5JL1 Arachis hypogaea HOM05D005314 ORTHO05D006522 7.5e-91 338.2 345 57.7
Gohir.D07G021900 Gossypium hirsutum HOM05D005314 ORTHO05D006522 2.7e-88 329.7 204 80.9
Mapoly0049s0128 Marchantia polymorpha HOM05D005314 ORTHO05D006522 3.5e-80 302.8 328 50.3
Zm00001eb155260 Zea mays HOM05D005314 ORTHO05D006522 4.4e-75 285.8 249 61.8
Ah.10g034130 Amaranthus hybridus HOM05D005314 ORTHO05D006522 7.5e-75 285.0 249 63.1
MD11G1243300 Malus domestica HOM05D005314 ORTHO05D006522 7.0e-73 278.5 171 80.1
CARHR201170 Cardamine hirsuta HOM05D005314 ORTHO05D006522 4.3e-70 269.2 200 67.0
Pp3c7_50 Physcomitrium patens HOM05D005314 ORTHO05D006522 2.0e-67 260.4 302 46.4
Hund03325 Selenicereus undatus HOM05D005314 ORTHO05D006522 5.6e-62 242.3 255 53.7
Lj7A260G18 Lonicera japonica HOM05D005314 ORTHO05D006522 3.0e-55 219.9 238 56.3
PGSC0003DMG400031356 Solanum tuberosum HOM05D005314 ORTHO05D006522 5.6e-54 215.7 124 91.1
Os01g0708300 Oryza sativa ssp. japonica HOM05D005314 ORTHO05D006522 1.8e-52 210.7 144 70.1
Cpa.g.sc7.160 Carica papaya HOM05D005314 ORTHO05D006522 5.2e-52 209.1 144 75.7
RcHm_v2.0_Chr1g0383701 Rosa chinensis HOM05D005314 ORTHO05D006522 4.4e-51 206.1 152 69.1
Cpa.g.sc7.159 Carica papaya HOM05D005314 ORTHO05D006522 2.4e-49 200.3 165 64.2
AUR62039137 Chenopodium quinoa HOM05D005314 ORTHO05D006522 1.2e-45 188.0 131 74.0
CBR_g50008 Chara braunii HOM05D005314 ORTHO05D006522 3.6e-45 186.4 329 38.3
CSS0003098 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 5.4e-41 172.6 110 80.9
arahy.Tifrunner.gnm1.ann1.IMU44M Arachis hypogaea HOM05D005314 ORTHO05D006522 4.6e-40 169.5 184 54.9
Cre10.g419700 Chlamydomonas reinhardtii HOM05D005314 ORTHO05D006522 5.6e-38 162.5 346 32.9
MCO12G408 Micromonas commoda HOM05D005314 ORTHO05D006522 1.6e-37 161.0 341 33.1
PRCOL_00001271 Prasinoderma coloniale HOM05D005314 ORTHO05D006522 4.0e-36 156.4 323 31.3
BcaB03g16563 Brassica carinata HOM05D005314 ORTHO05D006522 1.1e-30 138.3 113 64.6
Oeu040341.1 Olea europaea HOM05D005314 ORTHO05D006522 5.8e-27 125.9 74 83.8
Gohir.D07G021800 Gossypium hirsutum HOM05D005314 ORTHO05D006522 9.6e-22 108.6 95 61.1
arahy.Tifrunner.gnm1.ann1.TY68CU Arachis hypogaea HOM05D005314 ORTHO05D005864 8.2e-21 105.5 106 59.4
CSS0034519 Camellia sinensis var. sinensis HOM05D005314 ORTHO05D006522 2.0e-19 100.9 95 62.1
SEGI_34785 Sequoiadendron giganteum HOM05D005314 ORTHO05D006522 3.8e-18 96.7 73 63.0


User provided reference genes

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