Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G13.21 Capsicum annuum HOM05D004682 ORTHO05D006197 0.0e+00 2129.4 1101 100.0
Sopen05g022990 Solanum pennellii HOM05D004682 ORTHO05D006197 0.0e+00 1946.4 1102 91.1
Solyc05g026510.4 Solanum lycopersicum HOM05D004682 ORTHO05D006197 0.0e+00 1935.6 1118 89.9
Nitab4.5_0000135g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1765.7 1369 71.6
Nitab4.5_0000282g0030 Nicotiana tabacum HOM05D004682 ORTHO05D006197 0.0e+00 1704.1 1070 84.2
Peaxi162Scf00159g01650 Petunia axillaris HOM05D004682 ORTHO05D006197 0.0e+00 1656.0 1106 79.4
PGSC0003DMG401015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 0.0e+00 1602.0 914 90.6
Hma1.2p1_0399F.1_g144320 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 0.0e+00 1497.6 1118 68.5
CSS0044691 Camellia sinensis var. sinensis HOM05D004682 ORTHO05D006197 0.0e+00 1479.2 1110 67.9
Cc01_g20100 Coffea canephora HOM05D004682 ORTHO05D006197 0.0e+00 1472.2 1126 67.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 0.0e+00 1472.2 1126 68.5
Oeu002696.1 Olea europaea HOM05D004682 ORTHO05D006197 0.0e+00 1457.2 1149 66.2
CiPaw.07G098500 Carya illinoinensis HOM05D004682 ORTHO05D006197 0.0e+00 1455.3 1120 66.6
Actinidia00705 Actinidia chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1450.3 1123 66.3
GSVIVG01011020001 Vitis vinifera HOM05D004682 ORTHO05D006197 0.0e+00 1443.7 1118 66.9
QL12p023658 Quercus lobata HOM05D004682 ORTHO05D006197 0.0e+00 1442.2 1118 66.7
Duzib138G0788 Durio zibethinus HOM05D004682 ORTHO05D006197 0.0e+00 1430.6 1121 65.5
Thecc.01G288600 Theobroma cacao HOM05D004682 ORTHO05D006197 0.0e+00 1416.7 1125 65.5
MSTRG.18200 Avicennia marina HOM05D004682 ORTHO05D006197 0.0e+00 1416.0 1116 65.9
Rhsim13G0018300 Rhododendron simsii HOM05D004682 ORTHO05D006197 0.0e+00 1409.8 1190 63.0
Gohir.A11G118700 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1405.2 1121 64.9
Haze_04797 Corylus avellana HOM05D004682 ORTHO05D006197 0.0e+00 1403.3 1002 70.1
Ciclev10018593m.g Citrus clementina HOM05D004682 ORTHO05D006197 0.0e+00 1401.3 1115 64.7
PGR044G1334 Punica granatum HOM05D004682 ORTHO05D006197 0.0e+00 1398.3 1107 65.3
Nn3g21239 Nelumbo nucifera HOM05D004682 ORTHO05D006197 0.0e+00 1395.2 1118 65.2
Sed0020737 Sechium edule HOM05D004682 ORTHO05D006197 0.0e+00 1394.8 1123 63.6
vmacro02515 Vaccinium macrocarpon HOM05D004682 ORTHO05D006197 0.0e+00 1394.4 1230 61.1
Gohir.D11G123600 Gossypium hirsutum HOM05D004682 ORTHO05D006197 0.0e+00 1394.0 1118 64.8
CsaV3_1G038120 Cucumis sativus L. HOM05D004682 ORTHO05D006197 0.0e+00 1392.1 1116 63.7
SalBow3G2371 Salvia bowleyana HOM05D004682 ORTHO05D006197 0.0e+00 1389.8 1131 63.0
Eucgr.K03425 Eucalyptus grandis HOM05D004682 ORTHO05D006197 0.0e+00 1387.1 1115 64.3
TAR633G2734 Trochodendron aralioides HOM05D004682 ORTHO05D006197 0.0e+00 1386.3 1130 64.4
Gorai.007G132500 Gossypium raimondii HOM05D004682 ORTHO05D006197 0.0e+00 1385.9 1118 64.4
Potri.002G230800 Populus trichocarpa HOM05D004682 ORTHO05D006197 0.0e+00 1382.1 1111 65.2
Prupe.8G250900 Prunus persica HOM05D004682 ORTHO05D006197 0.0e+00 1380.9 1114 64.6
Manes.01G212500 Manihot esculenta HOM05D004682 ORTHO05D006197 0.0e+00 1373.6 1110 64.1
Migut.D00237 Erythranthe guttata HOM05D004682 ORTHO05D006197 0.0e+00 1373.2 1115 64.0
CANSAT25G1381 Cannabis sativa HOM05D004682 ORTHO05D006197 0.0e+00 1365.9 1095 64.0
arahy.Tifrunner.gnm1.ann1.SJK0SQ Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1362.1 1112 63.1
DCAR_018370 Daucus carota HOM05D004682 ORTHO05D006197 0.0e+00 1348.6 1108 63.5
Ca_09103_v3 Cicer arietinum L. HOM05D004682 ORTHO05D006197 0.0e+00 1346.6 1098 62.8
Lj2A1184G69 Lonicera japonica HOM05D004682 ORTHO05D006197 0.0e+00 1342.8 1123 63.0
Sabra02G0176000 Salix brachista HOM05D004682 ORTHO05D006197 0.0e+00 1340.1 1123 63.3
Glyma.03G207600 Glycine max HOM05D004682 ORTHO05D006197 0.0e+00 1339.7 1110 62.6
MD11G1296700 Malus domestica HOM05D004682 ORTHO05D006197 0.0e+00 1339.3 1120 62.9
arahy.Tifrunner.gnm1.ann1.BJ6WT1 Arachis hypogaea HOM05D004682 ORTHO05D006197 0.0e+00 1329.3 1112 62.2
VMungo1383G2773 Vigna mungo HOM05D004682 ORTHO05D006197 0.0e+00 1329.3 1114 61.4
SGA_v2.0_scaffold1G00427 Striga asiatica HOM05D004682 ORTHO05D006197 0.0e+00 1328.5 1134 61.4
AUR62013599 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1326.6 1103 62.6
Lj1g0026346 Lotus japonicus HOM05D004682 ORTHO05D006197 0.0e+00 1325.5 1099 62.2
ECA247G2915 Erigeron canadensis HOM05D004682 ORTHO05D006197 0.0e+00 1322.0 1108 62.4
AUR62026692 Chenopodium quinoa HOM05D004682 ORTHO05D006197 0.0e+00 1315.4 1117 61.7
Lsat_1_v5_gn_9_5121 Lactuca sativa HOM05D004682 ORTHO05D006197 0.0e+00 1315.4 1116 61.6
Cfa006055 Carpinus fangiana HOM05D003625 ORTHO05D006197 0.0e+00 1312.7 1004 67.2
Lalb_Chr20g0111011 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1312.7 1109 62.3
HanXRQChr10g0283031 Helianthus annuus HOM05D004682 ORTHO05D006197 0.0e+00 1311.2 1109 62.3
Phvul.001G201200 Phaseolus vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1310.0 1115 61.0
Aqoxy2G03153 Aquilegia oxysepala HOM05D004682 ORTHO05D006197 0.0e+00 1302.0 1063 63.0
PSO170G5080 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1300.4 1065 62.4
RcHm_v2.0_Chr6g0292391 Rosa chinensis HOM05D004682 ORTHO05D006197 0.0e+00 1297.7 1101 61.9
FvH4_2g24570 Fragaria vesca HOM05D004682 ORTHO05D006197 0.0e+00 1296.2 1098 61.8
MBI19_g27957_MAGBIO Magnolia biondii HOM05D004682 ORTHO05D006197 0.0e+00 1295.8 1161 60.0
EL10Ac1g01562 Beta vulgaris HOM05D004682 ORTHO05D006197 0.0e+00 1289.2 1101 61.6
FAN15G3206 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1287.3 1105 61.5
FAN24G1905 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1284.6 1099 61.6
Psat3g025520 Pisum sativum HOM05D004682 ORTHO05D006197 0.0e+00 1283.5 1113 59.9
FAN27G0404 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1282.7 1105 61.4
Thhalv10001288m.g Eutrema salsugineum HOM05D004682 ORTHO05D006197 0.0e+00 1279.6 1073 60.9
AL4G47570 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1275.0 1031 62.7
Ah.05g167980 Amaranthus hybridus HOM05D004682 ORTHO05D006197 0.0e+00 1272.3 1109 60.7
BcaB02g08728 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1271.1 1079 60.5
Carub.0004s3070 Capsella rubella HOM05D004682 ORTHO05D006197 0.0e+00 1268.8 1053 61.3
Medtr7g107440 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1268.8 1109 59.8
CDE05G1251 Ceratophyllum demersum HOM05D004682 ORTHO05D006197 0.0e+00 1268.4 1123 59.8
AT2G47980 Arabidopsis thaliana HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1031 62.5
CARHR143360 Cardamine hirsuta HOM05D004682 ORTHO05D006197 0.0e+00 1266.5 1078 60.9
Sp4g29900 Schrenkiella parvula HOM05D004682 ORTHO05D006197 0.0e+00 1266.1 1100 59.7
PSO407G0071 Papaver somniferum HOM05D004682 ORTHO05D006197 0.0e+00 1265.8 1118 59.3
Hund18022 Selenicereus undatus HOM05D004682 ORTHO05D006197 0.0e+00 1265.0 1123 60.2
C04p00010 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1261.5 1073 60.4
Lalb_Chr25g0287581 Lupinus albus HOM05D004682 ORTHO05D006197 0.0e+00 1260.0 1106 60.4
THA.LOC104817537 Tarenaya hassleriana HOM05D004682 ORTHO05D006197 0.0e+00 1259.2 1114 59.8
BcaC02g12533 Brassica carinata HOM05D004682 ORTHO05D006197 0.0e+00 1256.5 1075 60.3
FAN20G1430 Fragaria x ananassa HOM05D004682 ORTHO05D006197 0.0e+00 1255.4 1103 60.6
Atru.chr5.1294 Acer truncatum HOM05D004682 ORTHO05D006197 0.0e+00 1253.4 1114 60.1
BraA05t19005Z Brassica rapa HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1065 60.1
COL.COLO4_08044 Corchorus olitorius HOM05D004682 ORTHO05D006197 0.0e+00 1251.9 1125 60.5
A05p00090 Brassica napus HOM05D004682 ORTHO05D006197 0.0e+00 1250.7 1066 60.0
BolC4t21648H Brassica oleracea HOM05D004682 ORTHO05D006197 0.0e+00 1248.4 1085 59.7
TPR.G32282 Trifolium pratense HOM05D004682 ORTHO05D006197 0.0e+00 1244.6 1100 58.5
Aa31LG1G29400 Aethionema arabicum HOM05D004682 ORTHO05D006197 0.0e+00 1240.3 1084 60.1
unitig_22.g5252 Utricularia gibba HOM05D004682 ORTHO05D006197 0.0e+00 1234.2 1095 58.7
TWI59G0906 Tripterygium wilfordii HOM05D004682 ORTHO05D006197 0.0e+00 1214.5 1121 58.5
Os05g0188500 Oryza sativa ssp. japonica HOM05D004682 ORTHO05D006197 0.0e+00 1172.9 1038 57.8
MELO3C015235.2 Cucumis melo HOM05D004682 ORTHO05D006197 0.0e+00 1164.4 913 64.3
ATR0706G112 Amborella trichopoda HOM05D004682 ORTHO05D006197 0.0e+00 1163.7 1043 58.6
Medtr1g048130 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1159.8 1073 56.6
AL7G17990 Arabidopsis lyrata HOM05D004682 ORTHO05D006197 0.0e+00 1142.1 1046 57.1
Zm00001eb115650 Zea mays HOM05D004682 ORTHO05D006197 0.0e+00 1120.5 1040 55.6
Medtr1g047970 Medicago truncatula HOM05D004682 ORTHO05D006197 0.0e+00 1112.4 1083 54.4
SEGI_13218 Sequoiadendron giganteum HOM05D004682 ORTHO05D006197 0.0e+00 1103.6 1096 53.0
HPP92_017192 Vanilla planifolia HOM05D004682 ORTHO05D006197 5.9e-307 1057.7 1065 54.3
Cpa.g.sc9.149 Carica papaya HOM05D004682 ORTHO05D006197 1.4e-303 1046.6 1068 54.5
Potri.014G151400 Populus trichocarpa HOM05D004682 ORTHO05D006197 2.6e-302 1042.3 867 63.3
Sc17g0003630 Simmondsia chinensis HOM05D004682 ORTHO05D006197 3.2e-297 1025.4 818 64.8
Hma1.2p1_1049F.1_g251880 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 2.3e-295 1019.2 679 73.6
COL.COLO4_31667 Corchorus olitorius HOM05D004682 ORTHO05D006197 4.2e-289 998.4 952 54.4
HPP92_027340 Vanilla planifolia HOM05D004682 ORTHO05D006197 2.7e-283 979.2 1124 50.2
Mapoly0007s0132 Marchantia polymorpha HOM05D004682 ORTHO05D006197 8.9e-279 964.1 1011 50.9
Pp3c9_5570 Physcomitrium patens HOM05D004682 ORTHO05D006197 1.4e-263 913.7 1000 48.5
SHI14494 Sapria himalayana HOM05D004682 ORTHO05D006197 6.8e-263 911.4 783 61.3
SMO347G0479 Selaginella moellendorffii HOM05D004682 ORTHO05D006197 1.1e-257 894.0 962 48.3
AagrBONN_evm.TU.Sc2ySwM_369.560 Anthoceros agrestis HOM05D004682 ORTHO05D006197 1.2e-238 830.9 1002 46.2
QL12p023612 Quercus lobata HOM05D004682 ORTHO05D006197 8.2e-224 781.6 634 63.9
Hma1.2p1_0399F.1_g144310 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.3e-217 759.2 546 70.9
Hma1.2p1_1049F.1_g251875 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 4.3e-217 759.2 546 70.9
Hma1.2p1_0399F.1_g144330 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 6.1e-211 738.8 572 66.3
CBR_g31051 Chara braunii HOM05D004682 ORTHO05D006197 6.3e-200 702.2 1039 39.9
ClCG03G018080 Citrullus lanatus HOM05D004682 ORTHO05D006197 1.7e-152 544.7 394 69.8
PGSC0003DMG402015901 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.5e-96 356.3 206 89.3
Medtr3g050420 Medicago truncatula HOM05D004682 ORTHO05D006197 1.8e-90 338.6 397 49.4
HanXRQChr08g0228671 Helianthus annuus HOM05D004682 ORTHO05D006197 2.2e-59 235.3 201 59.2
MCO01G509 Micromonas commoda HOM05D004682 ORTHO05D006197 4.8e-59 234.2 599 27.7
Actinidia24288 Actinidia chinensis HOM05D004682 ORTHO05D006197 2.3e-56 225.3 143 74.8
PGSC0003DMG400019559 Solanum tuberosum HOM05D004682 ORTHO05D006197 8.3e-51 206.8 176 68.2
PSO384G2775 Papaver somniferum HOM05D004682 ORTHO05D006197 2.9e-48 198.4 164 61.0
Thecc.06G206000 Theobroma cacao HOM05D004682 ORTHO05D006197 8.3e-43 180.3 171 56.7
ClCG03G018060 Citrullus lanatus HOM05D004682 ORTHO05D006197 2.3e-40 172.2 203 46.8
HanXRQChr08g0228681 Helianthus annuus HOM05D004682 ORTHO05D006197 4.0e-37 161.4 174 54.0
PGSC0003DMG400019558 Solanum tuberosum HOM05D004682 ORTHO05D006197 2.6e-36 158.7 105 77.1
PGSC0003DMG400006683 Solanum tuberosum HOM05D004682 ORTHO05D006197 1.7e-35 156.0 121 70.2
Cre17.g736400 Chlamydomonas reinhardtii HOM05D004682 ORTHO05D006197 4.9e-35 154.5 389 30.8
Cfa025969 Carpinus fangiana HOM05D004682 ORTHO05D006197 9.2e-34 150.2 638 23.8
DCAR_030309 Daucus carota HOM05D004682 ORTHO05D006197 9.5e-31 140.2 150 50.0
PGSC0003DMG400017058 Solanum tuberosum HOM05D004682 ORTHO05D026186 5.8e-20 104.4 74 68.9
Medtr5g092930 Medicago truncatula HOM05D004682 ORTHO05D006197 2.2e-19 102.4 101 48.5
Nitab4.5_0000282g0040 Nicotiana tabacum HOM05D004682 ORTHO05D006197 2.9e-19 102.1 77 75.3
RcHm_v2.0_Chr5g0002211 Rosa chinensis HOM05D004682 ORTHO05D029379 6.0e-17 94.4 244 27.5
Hma1.2p1_1049F.1_g251890 Hydrangea macrophylla HOM05D004682 ORTHO05D006197 1.7e-16 92.8 77 68.8
Solyc05g023600.3 Solanum lycopersicum HOM05D004682 ORTHO05D006197 7.3e-15 87.4 136 44.1
Solyc09g037030.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 6.2e-14 84.3 130 46.2
PGSC0003DMG400005432 Solanum tuberosum HOM05D004682 ORTHO05D003903 3.4e-12 78.6 39 89.7
Medtr5g092920 Medicago truncatula HOM05D036979 ORTHO05D006197 5.8e-12 77.8 303 26.4
PGSC0003DMG400017057 Solanum tuberosum HOM05D004682 ORTHO05D005906 1.3e-11 76.6 82 50.0
Solyc05g021530.3 Solanum lycopersicum HOM05D025699 ORTHO05D026176 2.2e-11 75.9 87 56.3
Medtr7g089690 Medicago truncatula HOM05D004682 ORTHO05D006197 3.8e-11 75.1 68 54.4
Solyc09g037050.2 Solanum lycopersicum HOM05D020974 ORTHO05D023151 6.0e-09 67.8 60 60.0
Solyc03g150123.1 Solanum lycopersicum HOM05D004682 ORTHO05D026176 3.0e-08 65.5 58 60.3
Thecc.06G205900 Theobroma cacao HOM05D004682 ORTHO05D006197 8.7e-08 63.9 71 49.3
Solyc03g051710.1 Solanum lycopersicum HOM05D004682 ORTHO05D006197 1.1e-07 63.5 49 63.3
Sopen11g012770 Solanum pennellii HOM05D056827 ORTHO05D026186 8.1e-06 57.4 49 67.3


User provided reference genes

Program Settings