Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1298.38 Capsicum annuum HOM05D025866 ORTHO05D020249 9.4e-95 350.1 170 100.0
CAN.G1972.7 Capsicum annuum HOM05D025866 ORTHO05D020249 1.0e-61 240.4 151 83.4
CAN.G1972.6 Capsicum annuum HOM05D025866 ORTHO05D020249 8.3e-59 230.7 151 81.5
CAN.G1415.12 Capsicum annuum HOM05D000295 ORTHO05D000188 5.9e-57 224.6 147 78.9
CAN.G1884.5 Capsicum annuum HOM05D025866 ORTHO05D020249 1.6e-49 199.9 109 90.8
PGSC0003DMG400000122 Solanum tuberosum HOM05D000295 ORTHO05D000188 2.1e-46 189.5 136 72.1
Sopen01g039910 Solanum pennellii HOM05D000295 ORTHO05D000188 3.1e-45 185.7 136 69.9
Solyc01g096170.4 Solanum lycopersicum HOM05D000295 ORTHO05D000188 1.2e-44 183.7 135 69.6
Nitab4.5_0006770g0040 Nicotiana tabacum HOM05D000295 ORTHO05D000188 1.2e-41 173.7 140 68.6
Nitab4.5_0000307g0070 Nicotiana tabacum HOM05D000295 ORTHO05D020249 2.0e-41 172.9 136 69.1
Peaxi162Scf00345g00028 Petunia axillaris HOM05D000295 ORTHO05D000188 6.6e-32 141.4 149 55.7
Peaxi162Scf00087g00222 Petunia axillaris HOM05D000295 ORTHO05D000188 3.4e-20 102.4 149 46.3
Nitab4.5_0001902g0030 Nicotiana tabacum HOM05D000295 ORTHO05D000188 3.8e-19 99.0 139 47.5
Nitab4.5_0000917g0030 Nicotiana tabacum HOM05D000295 ORTHO05D000188 3.5e-17 92.4 140 45.0
Solyc10g009350.4 Solanum lycopersicum HOM05D000295 ORTHO05D000188 2.5e-15 86.3 117 44.4
Sopen10g005140 Solanum pennellii HOM05D000295 ORTHO05D000188 2.5e-15 86.3 128 42.2
Thecc.01G338600 Theobroma cacao HOM05D000295 ORTHO05D000188 4.3e-15 85.5 124 45.2
Rhsim07G0002200 Rhododendron simsii HOM05D000295 ORTHO05D000188 3.6e-14 82.4 144 41.0
MELO3C006004.2 Cucumis melo HOM05D000295 ORTHO05D000188 1.8e-13 80.1 134 41.0
Duzib133G1502 Durio zibethinus HOM05D000295 ORTHO05D000188 1.8e-13 80.1 122 43.4
CsaV3_3G007860 Cucumis sativus L. HOM05D000295 ORTHO05D000188 2.4e-13 79.7 130 43.8
TAR375G0933 Trochodendron aralioides HOM05D000295 ORTHO05D000188 2.4e-13 79.7 119 40.3
PGSC0003DMG400018885 Solanum tuberosum HOM05D000295 ORTHO05D043472 4.0e-13 79.0 117 41.9
MSTRG.17361 Avicennia marina HOM05D000295 ORTHO05D000188 5.3e-13 78.6 122 42.6
ClCG05G000640 Citrullus lanatus HOM05D000295 ORTHO05D000188 5.3e-13 78.6 129 43.4
MBI04_g06928_MAGBIO Magnolia biondii HOM05D000295 ORTHO05D000188 6.9e-13 78.2 124 41.1
CSS0003668 Camellia sinensis var. sinensis HOM05D000295 ORTHO05D020249 9.0e-13 77.8 119 43.7
Thecc.03G223200 Theobroma cacao HOM05D000295 ORTHO05D000188 2.0e-12 76.6 142 40.8
vmacro04290 Vaccinium macrocarpon HOM05D000295 ORTHO05D000188 2.6e-12 76.3 119 41.2
COL.COLO4_06244 Corchorus olitorius HOM05D000295 ORTHO05D000188 3.4e-12 75.9 123 40.7
Gohir.A08G124300 Gossypium hirsutum HOM05D000295 ORTHO05D000188 7.6e-12 74.7 124 41.1
Gohir.D08G145400 Gossypium hirsutum HOM05D000295 ORTHO05D000188 7.6e-12 74.7 124 41.9
Gorai.004G150400 Gossypium raimondii HOM05D000295 ORTHO05D000188 1.3e-11 73.9 120 42.5
CSS0030787 Camellia sinensis var. sinensis HOM05D000295 ORTHO05D000188 2.2e-11 73.2 118 43.2
CSS0043573 Camellia sinensis var. sinensis HOM05D000295 ORTHO05D000188 2.2e-11 73.2 118 43.2
Actinidia28105 Actinidia chinensis HOM05D000295 ORTHO05D000188 2.9e-11 72.8 147 40.1
Ciclev10019052m.g Citrus clementina HOM05D000295 ORTHO05D000188 2.9e-11 72.8 139 40.3
TAR374G1579 Trochodendron aralioides HOM05D000295 ORTHO05D000188 4.9e-11 72.0 121 38.8
DCAR_022127 Daucus carota HOM05D000295 ORTHO05D000188 6.4e-11 71.6 123 39.0
TWI81G0205 Tripterygium wilfordii HOM05D000295 ORTHO05D000188 6.4e-11 71.6 84 47.6
Eucgr.D02391 Eucalyptus grandis HOM05D000295 ORTHO05D000188 8.4e-11 71.2 121 39.7
Cpa.g.sc96.65 Carica papaya HOM05D000295 ORTHO05D020249 1.1e-10 70.9 122 41.8
QL08p046063 Quercus lobata HOM05D000295 ORTHO05D000188 1.1e-10 70.9 122 41.0
Gohir.D12G240300 Gossypium hirsutum HOM05D000295 ORTHO05D000188 1.4e-10 70.5 94 45.7
Potri.014G101500 Populus trichocarpa HOM05D000295 ORTHO05D000188 1.9e-10 70.1 120 40.8
Rhsim01G0175600 Rhododendron simsii HOM05D000295 ORTHO05D000188 2.4e-10 69.7 120 41.7
Atru.chr5.714 Acer truncatum HOM05D000295 ORTHO05D000188 3.2e-10 69.3 122 45.9
Cpa.g.sc175.8 Carica papaya HOM05D000295 ORTHO05D000188 3.2e-10 69.3 120 40.0
Cfa003772 Carpinus fangiana HOM05D000295 ORTHO05D000188 3.2e-10 69.3 120 38.3
Migut.N01528 Erythranthe guttata HOM05D000295 ORTHO05D000188 3.2e-10 69.3 142 36.6
Atru.chr9.1904 Acer truncatum HOM05D000295 ORTHO05D000188 4.2e-10 68.9 151 34.4
Haze_15688 Corylus avellana HOM05D000295 ORTHO05D000188 4.2e-10 68.9 120 35.8
Gohir.A12G239100 Gossypium hirsutum HOM05D000295 ORTHO05D000188 4.2e-10 68.9 144 34.7
SalBow3G4211 Salvia bowleyana HOM05D000295 ORTHO05D000188 4.2e-10 68.9 135 38.5
SalBow3G4422 Salvia bowleyana HOM05D000295 ORTHO05D000188 4.2e-10 68.9 135 38.5
Gorai.008G257300 Gossypium raimondii HOM05D000295 ORTHO05D000188 7.1e-10 68.2 144 35.4
MD01G1085200 Malus domestica HOM05D000295 ORTHO05D000188 7.1e-10 68.2 78 52.6
Sed0002281 Sechium edule HOM05D000295 ORTHO05D000188 7.1e-10 68.2 120 41.7
CiPaw.01G078700 Carya illinoinensis HOM05D000295 ORTHO05D000188 9.3e-10 67.8 65 55.4
Migut.B01898 Erythranthe guttata HOM05D000295 ORTHO05D000188 9.3e-10 67.8 153 33.3
Nitab4.5_0005042g0050 Nicotiana tabacum HOM05D000295 ORTHO05D000188 2.7e-09 66.2 97 42.3
Duzib205G0206 Durio zibethinus HOM05D000295 ORTHO05D000188 3.5e-09 65.9 149 36.9
Prupe.2G192800 Prunus persica HOM05D000295 ORTHO05D000188 3.5e-09 65.9 64 56.2
Duzib084G0882 Durio zibethinus HOM05D000295 ORTHO05D000188 1.0e-08 64.3 142 38.7
Medtr8g027265 Medicago truncatula HOM05D000295 ORTHO05D000188 1.0e-08 64.3 61 55.7
FAN01G2190 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.3e-08 63.9 78 51.3
FAN03G0368 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.3e-08 63.9 78 51.3
Lj9A601G38 Lonicera japonica HOM05D000295 ORTHO05D000188 1.3e-08 63.9 80 47.5
Lalb_Chr04g0254331 Lupinus albus HOM05D000295 ORTHO05D000188 1.3e-08 63.9 120 38.3
Psat4g162280 Pisum sativum HOM05D000295 ORTHO05D000188 1.3e-08 63.9 59 64.4
Duzib068G1170 Durio zibethinus HOM05D000295 ORTHO05D000188 1.8e-08 63.5 91 47.3
Lj8C201T25 Lonicera japonica HOM05D000295 ORTHO05D000188 1.8e-08 63.5 95 38.9
Ca_23510_v3 Cicer arietinum L. HOM05D000295 ORTHO05D000188 2.3e-08 63.2 60 56.7
Nitab4.5_0002728g0140 Nicotiana tabacum HOM05D000295 ORTHO05D000188 2.3e-08 63.2 97 41.2
Psat5g108520 Pisum sativum HOM05D000295 ORTHO05D000188 2.3e-08 63.2 96 39.6
Dinv02415 Davidia involucrata HOM05D000295 ORTHO05D000188 3.0e-08 62.8 69 49.3
Dinv02416 Davidia involucrata HOM05D000295 ORTHO05D000188 3.0e-08 62.8 69 49.3
TPR.G15920 Trifolium pratense HOM05D000295 ORTHO05D000188 3.0e-08 62.8 64 56.2
CANSAT56G1057 Cannabis sativa HOM05D000295 ORTHO05D000188 3.9e-08 62.4 79 44.3
Phvul.010G115800 Phaseolus vulgaris HOM05D000295 ORTHO05D000188 3.9e-08 62.4 119 36.1
Ca_16301_v3 Cicer arietinum L. HOM05D000295 ORTHO05D000188 5.1e-08 62.0 120 35.0
FvH4_5g11251 Fragaria vesca HOM05D000295 ORTHO05D000188 5.1e-08 62.0 122 37.7
FAN18G0829 Fragaria x ananassa HOM05D000295 ORTHO05D000188 5.1e-08 62.0 122 37.7
FAN18G3709 Fragaria x ananassa HOM05D000295 ORTHO05D000188 5.1e-08 62.0 122 37.7
Gohir.D03G086500 Gossypium hirsutum HOM05D000295 ORTHO05D000188 5.1e-08 62.0 135 34.1
Hma1.2p1_0180F.1_g079640 Hydrangea macrophylla HOM05D000295 ORTHO05D000188 5.1e-08 62.0 124 37.1
Medtr3g080960 Medicago truncatula HOM05D000295 ORTHO05D000188 5.1e-08 62.0 120 35.8
MD07G1154200 Malus domestica HOM05D000295 ORTHO05D000188 6.7e-08 61.6 67 49.3
QL02p029024 Quercus lobata HOM05D000295 ORTHO05D000188 6.7e-08 61.6 134 38.8
Glyma.16G022600 Glycine max HOM05D000295 ORTHO05D000188 8.7e-08 61.2 125 35.2
Actinidia07982 Actinidia chinensis HOM05D000295 ORTHO05D000188 1.1e-07 60.8 95 43.2
Ciclev10019287m.g Citrus clementina HOM05D000295 ORTHO05D000188 1.5e-07 60.5 95 43.2
FAN08G0177 Fragaria x ananassa HOM05D000295 ORTHO05D000188 1.5e-07 60.5 122 39.3
Gorai.003G075600 Gossypium raimondii HOM05D000295 ORTHO05D000188 2.5e-07 59.7 138 34.8
TWI60G0460 Tripterygium wilfordii HOM05D000295 ORTHO05D000188 3.3e-07 59.3 77 46.8
Lj6g0009021 Lotus japonicus HOM05D000295 ORTHO05D000188 4.3e-07 58.9 73 42.5
TPR.G22976 Trifolium pratense HOM05D000295 ORTHO05D000188 4.3e-07 58.9 97 40.2
FAN13G0220 Fragaria x ananassa HOM05D000295 ORTHO05D000188 5.6e-07 58.5 122 37.7
Phvul.006G000200 Phaseolus vulgaris HOM05D000295 ORTHO05D000188 5.6e-07 58.5 58 50.0
MELO3C005777.2 Cucumis melo HOM05D000295 ORTHO05D000188 7.4e-07 58.2 67 49.3
CsaV3_5G001760 Cucumis sativus L. HOM05D000295 ORTHO05D000188 7.4e-07 58.2 74 44.6
Dinv12200 Davidia involucrata HOM05D000295 ORTHO05D000188 7.4e-07 58.2 139 32.4
Manes.05G020200 Manihot esculenta HOM05D000295 ORTHO05D000188 7.4e-07 58.2 128 37.5
arahy.Tifrunner.gnm1.ann1.U5DJ52 Arachis hypogaea HOM05D000295 ORTHO05D000188 9.6e-07 57.8 61 52.5
EL10Ac1g00229 Beta vulgaris HOM05D000295 ORTHO05D000188 9.6e-07 57.8 129 31.8
AUR62019900 Chenopodium quinoa HOM05D000295 ORTHO05D000188 1.3e-06 57.4 53 54.7
RcHm_v2.0_Chr1g0360461 Rosa chinensis HOM05D000295 ORTHO05D000188 1.3e-06 57.4 78 44.9
Sc01g0002420 Simmondsia chinensis HOM05D000295 ORTHO05D000188 1.6e-06 57.0 84 42.9
VMungo0540G2245 Vigna mungo HOM05D000295 ORTHO05D000188 1.6e-06 57.0 65 47.7
arahy.Tifrunner.gnm1.ann1.EQP4Z7 Arachis hypogaea HOM05D000295 ORTHO05D000188 2.1e-06 56.6 61 50.8
arahy.Tifrunner.gnm1.ann1.V96PE3 Arachis hypogaea HOM05D000295 ORTHO05D000188 2.1e-06 56.6 62 51.6
Potri.001G085500 Populus trichocarpa HOM05D000295 ORTHO05D000188 2.1e-06 56.6 65 47.7
ClCG01G001600 Citrullus lanatus HOM05D000295 ORTHO05D000188 2.8e-06 56.2 63 52.4
Lj3g0011588 Lotus japonicus HOM05D000295 ORTHO05D000188 3.7e-06 55.8 76 50.0
GSVIVG01027189001 Vitis vinifera HOM05D000295 ORTHO05D000188 3.7e-06 55.8 142 31.7
Haze_07520 Corylus avellana HOM05D000295 ORTHO05D000188 4.8e-06 55.5 144 30.6
Haze_09146 Corylus avellana HOM05D000295 ORTHO05D000188 6.2e-06 55.1 111 37.8
PGR031G3274 Punica granatum HOM05D000295 ORTHO05D000188 6.2e-06 55.1 73 42.5
Sed0012621 Sechium edule HOM05D000295 ORTHO05D000188 6.2e-06 55.1 139 33.8
Hund11358 Selenicereus undatus HOM05D000295 ORTHO05D000188 8.1e-06 54.7 56 50.0
Hund27174 Selenicereus undatus HOM05D000295 ORTHO05D000188 8.1e-06 54.7 66 47.0


User provided reference genes

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