Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1298.37 Capsicum annuum HOM05D002388 ORTHO05D004745 5.3e-96 354.4 180 100.0
PGSC0003DMG400014808 Solanum tuberosum HOM05D002388 ORTHO05D004745 1.0e-59 233.8 163 74.8
Solyc08g076510.3 Solanum lycopersicum HOM05D002388 ORTHO05D004745 3.3e-58 228.8 163 74.2
Sopen08g025090 Solanum pennellii HOM05D002388 ORTHO05D004745 3.3e-58 228.8 163 74.2
Nitab4.5_0000529g0040 Nicotiana tabacum HOM05D002388 ORTHO05D004745 6.5e-54 214.5 165 69.7
Nitab4.5_0001595g0030 Nicotiana tabacum HOM05D002388 ORTHO05D004745 2.5e-53 212.6 169 66.9
Peaxi162Scf00170g00816 Petunia axillaris HOM05D002388 ORTHO05D004745 4.2e-53 211.8 165 69.1
Dinv28990 Davidia involucrata HOM05D002388 ORTHO05D004745 1.7e-38 163.3 170 52.4
Dinv25247 Davidia involucrata HOM05D002388 ORTHO05D004745 1.0e-35 154.1 170 49.4
vmacro00293 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 2.0e-34 149.8 191 47.6
Actinidia03351 Actinidia chinensis HOM05D002388 ORTHO05D004745 2.6e-34 149.4 170 50.0
CSS0030959 Camellia sinensis var. sinensis HOM05D002388 ORTHO05D004745 1.3e-33 147.1 170 48.2
vmacro00300 Vaccinium macrocarpon HOM05D002388 ORTHO05D004745 3.7e-33 145.6 170 50.0
Hma1.2p1_0572F.1_g181220 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 6.3e-33 144.8 170 44.7
MSTRG.13744 Avicennia marina HOM05D002388 ORTHO05D004745 4.1e-32 142.1 165 49.7
Cfa012514 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.0e-32 141.4 170 47.6
Migut.E00774 Erythranthe guttata HOM05D002388 ORTHO05D004745 3.5e-31 139.0 163 52.1
Oeu028869.2 Olea europaea HOM05D002388 ORTHO05D004745 4.5e-31 138.7 224 39.7
Potri.003G095600 Populus trichocarpa HOM05D002388 ORTHO05D004745 5.9e-31 138.3 171 46.8
SGA_v2.0_scaffold20G09262 Striga asiatica HOM05D002388 ORTHO05D004745 7.7e-31 137.9 167 46.7
Atru.chr6.1616 Acer truncatum HOM05D002388 ORTHO05D004745 1.3e-30 137.1 165 47.3
Cc08_g03410 Coffea canephora HOM05D002388 ORTHO05D004745 8.6e-30 134.4 166 45.2
Cpa.g.sc90.11 Carica papaya HOM05D002388 ORTHO05D004745 1.5e-29 133.7 169 44.4
Duzib205G0909 Durio zibethinus HOM05D002388 ORTHO05D004745 3.2e-29 132.5 171 43.3
MSTRG.1999 Avicennia marina HOM05D002388 ORTHO05D004745 4.2e-29 132.1 168 45.2
THA.LOC104814421 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 4.2e-29 132.1 169 43.2
Prupe.5G029700 Prunus persica HOM05D002388 ORTHO05D004745 5.5e-29 131.7 164 48.2
QL12p001291 Quercus lobata HOM05D002388 ORTHO05D004745 5.5e-29 131.7 168 45.8
Manes.15G188200 Manihot esculenta HOM05D002388 ORTHO05D004745 7.2e-29 131.3 160 47.5
arahy.Tifrunner.gnm1.ann1.DQ9IRR Arachis hypogaea HOM05D002388 ORTHO05D004745 9.5e-29 131.0 165 48.5
arahy.Tifrunner.gnm1.ann1.JAYF1A Arachis hypogaea HOM05D002388 ORTHO05D004745 9.5e-29 131.0 165 48.5
Potri.001G138200 Populus trichocarpa HOM05D002388 ORTHO05D004745 1.2e-28 130.6 166 47.0
COL.COLO4_16959 Corchorus olitorius HOM05D002388 ORTHO05D004745 1.6e-28 130.2 171 44.4
Eucgr.E00235 Eucalyptus grandis HOM05D002388 ORTHO05D004745 1.6e-28 130.2 170 41.8
GSVIVG01013067001 Vitis vinifera HOM05D002388 ORTHO05D004745 2.8e-28 129.4 170 42.4
Aa31LG9G15470 Aethionema arabicum HOM05D002388 ORTHO05D004745 3.6e-28 129.0 170 42.4
Haze_08151 Corylus avellana HOM05D002388 ORTHO05D004745 4.7e-28 128.6 185 43.2
Duzib068G1098 Durio zibethinus HOM05D002388 ORTHO05D004745 6.1e-28 128.3 171 43.3
CsaV3_3G001460 Cucumis sativus L. HOM05D002388 ORTHO05D004745 1.4e-27 127.1 163 44.8
CiPaw.11G097400 Carya illinoinensis HOM05D002388 ORTHO05D004745 1.8e-27 126.7 170 45.9
Medtr5g029600 Medicago truncatula HOM05D002388 ORTHO05D004745 2.3e-27 126.3 164 48.8
Lj2g0009669 Lotus japonicus HOM05D002388 ORTHO05D004745 5.2e-27 125.2 162 45.1
AT1G32260 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 8.8e-27 124.4 168 41.7
Thhalv10008414m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 8.8e-27 124.4 172 40.1
Ah.12g055410 Amaranthus hybridus HOM05D002388 ORTHO05D004745 1.2e-26 124.0 172 41.3
Lalb_Chr16g0381151 Lupinus albus HOM05D002388 ORTHO05D004745 1.2e-26 124.0 164 43.3
Ciclev10003612m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.5e-26 123.6 146 50.7
Ciclev10002550m.g Citrus clementina HOM05D002388 ORTHO05D004745 2.0e-26 123.2 165 47.9
FAN18G3398 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-26 123.2 171 42.1
FAN18G3813 Fragaria x ananassa HOM05D002388 ORTHO05D004745 2.0e-26 123.2 171 42.1
Gohir.A08G154400 Gossypium hirsutum HOM05D002388 ORTHO05D004745 2.0e-26 123.2 171 42.1
THA.LOC104798489 Tarenaya hassleriana HOM05D002388 ORTHO05D004745 2.0e-26 123.2 160 43.1
AUR62007343 Chenopodium quinoa HOM05D002388 ORTHO05D004745 2.6e-26 122.9 170 42.9
Haze_08150 Corylus avellana HOM05D002388 ORTHO05D004745 2.6e-26 122.9 157 47.1
Lsat_1_v5_gn_6_3520 Lactuca sativa HOM05D002388 ORTHO05D004745 2.6e-26 122.9 160 46.2
Carub.0001s3059 Capsella rubella HOM05D002388 ORTHO05D004745 3.4e-26 122.5 170 41.8
Ca_22658_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 3.4e-26 122.5 162 43.8
Glyma.01G015300 Glycine max HOM05D002388 ORTHO05D004745 3.4e-26 122.5 167 44.9
FAN04G3082 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.4e-26 122.1 172 41.3
TPR.G8093 Trifolium pratense HOM05D002388 ORTHO05D004745 4.4e-26 122.1 164 45.7
FAN08G3109 Fragaria x ananassa HOM05D002388 ORTHO05D004745 5.7e-26 121.7 171 41.5
Thecc.03G308500 Theobroma cacao HOM05D002388 ORTHO05D004745 5.7e-26 121.7 171 41.5
Aa31LG2G13740 Aethionema arabicum HOM05D002388 ORTHO05D004745 7.5e-26 121.3 166 43.4
Cfa012512 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.5e-26 121.3 170 44.7
Cfa021255 Carpinus fangiana HOM05D002388 ORTHO05D004745 7.5e-26 121.3 170 44.7
Psat4g121840 Pisum sativum HOM05D002388 ORTHO05D004745 7.5e-26 121.3 167 40.1
AUR62018656 Chenopodium quinoa HOM05D002388 ORTHO05D004745 9.8e-26 120.9 170 42.4
Gohir.D08G175075 Gossypium hirsutum HOM05D002388 ORTHO05D004745 9.8e-26 120.9 171 42.1
Gorai.004G182900 Gossypium raimondii HOM05D002388 ORTHO05D004745 9.8e-26 120.9 171 42.1
Aqoxy3G02211 Aquilegia oxysepala HOM05D004797 ORTHO05D004745 1.7e-25 120.2 169 42.6
EL10Ac5g12028 Beta vulgaris HOM05D002388 ORTHO05D004745 1.7e-25 120.2 171 42.1
Hund14363 Selenicereus undatus HOM05D002388 ORTHO05D004745 1.7e-25 120.2 172 40.7
MD06G1025400 Malus domestica HOM05D002388 ORTHO05D004745 2.2e-25 119.8 169 41.4
BcaB07g32907 Brassica carinata HOM05D002388 ORTHO05D004745 2.8e-25 119.4 153 42.5
CARHR031630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 2.8e-25 119.4 162 41.4
ClCG10G001380 Citrullus lanatus HOM05D002388 ORTHO05D004745 2.8e-25 119.4 159 45.3
Nn1g00186 Nelumbo nucifera HOM05D002388 ORTHO05D004745 2.8e-25 119.4 169 41.4
RcHm_v2.0_Chr7g0211591 Rosa chinensis HOM05D002388 ORTHO05D004745 2.8e-25 119.4 171 40.9
A09p33880 Brassica napus HOM05D002388 ORTHO05D004745 4.9e-25 118.6 165 41.8
BraA09t38936Z Brassica rapa HOM05D002388 ORTHO05D004745 4.9e-25 118.6 165 41.8
FAN13G2852 Fragaria x ananassa HOM05D002388 ORTHO05D004745 4.9e-25 118.6 197 37.6
Nn3g19408 Nelumbo nucifera HOM05D002388 ORTHO05D004745 4.9e-25 118.6 165 40.6
Sabra01G0106900 Salix brachista HOM05D002388 ORTHO05D008833 6.3e-25 118.2 188 40.4
Ca_25190_v3 Cicer arietinum L. HOM05D002388 ORTHO05D004745 1.4e-24 117.1 157 44.6
Ciclev10003879m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.4e-24 117.1 152 47.4
ECA233G5493 Erigeron canadensis HOM05D002388 ORTHO05D004745 1.4e-24 117.1 171 40.4
PGR042G0491 Punica granatum HOM05D002388 ORTHO05D004745 1.4e-24 117.1 166 45.2
CANSAT35G0066 Cannabis sativa HOM05D002388 ORTHO05D004745 1.8e-24 116.7 171 42.1
Sp4g17700 Schrenkiella parvula HOM05D002388 ORTHO05D004745 1.8e-24 116.7 169 43.2
FvH4_5g22890 Fragaria vesca HOM05D002388 ORTHO05D004745 2.4e-24 116.3 178 40.4
PSO339G4108 Papaver somniferum HOM05D002388 ORTHO05D004745 2.4e-24 116.3 169 40.8
TWI15G0743 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 2.4e-24 116.3 163 39.9
C05p31720 Brassica napus HOM05D002388 ORTHO05D004745 4.1e-24 115.5 164 42.7
BolC5t31898H Brassica oleracea HOM05D002388 ORTHO05D004745 4.1e-24 115.5 164 42.7
Phvul.002G137900 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 4.1e-24 115.5 160 43.1
Glyma.09G207100 Glycine max HOM05D002388 ORTHO05D004745 5.4e-24 115.2 167 42.5
PSO384G0605 Papaver somniferum HOM05D002388 ORTHO05D004745 7.0e-24 114.8 169 40.2
Rhsim11G0019800 Rhododendron simsii HOM05D002388 ORTHO05D004745 7.0e-24 114.8 241 33.6
SalBow1G6210 Salvia bowleyana HOM05D002388 ORTHO05D004745 7.0e-24 114.8 157 45.2
Sc22g0001810 Simmondsia chinensis HOM05D002388 ORTHO05D004745 7.0e-24 114.8 170 40.0
VMungo1215G2489 Vigna mungo HOM05D002388 ORTHO05D004745 7.0e-24 114.8 161 44.7
Lalb_Chr09g0325541 Lupinus albus HOM05D002388 ORTHO05D004745 9.2e-24 114.4 177 41.2
Psat2g138920 Pisum sativum HOM05D002388 ORTHO05D004745 9.2e-24 114.4 157 45.9
BcaC05g27267 Brassica carinata HOM05D002388 ORTHO05D004745 1.2e-23 114.0 164 42.7
TPR.G3315 Trifolium pratense HOM05D002388 ORTHO05D004745 1.2e-23 114.0 167 38.3
HanXRQChr13g0419911 Helianthus annuus HOM05D002388 ORTHO05D004745 1.6e-23 113.6 169 42.0
Haze_08172 Corylus avellana HOM05D002388 ORTHO05D004745 3.5e-23 112.5 191 40.3
HanXRQChr02g0049371 Helianthus annuus HOM05D002388 ORTHO05D004745 4.5e-23 112.1 168 39.9
TWI60G0128 Tripterygium wilfordii HOM05D002388 ORTHO05D004745 7.8e-23 111.3 163 40.5
Cfa012499 Carpinus fangiana HOM05D002388 ORTHO05D004745 1.0e-22 110.9 156 42.9
Rhsim07G0131100 Rhododendron simsii HOM05D002388 ORTHO05D004745 1.0e-22 110.9 167 41.3
SEGI_33523 Sequoiadendron giganteum HOM05D002388 ORTHO05D004745 1.7e-22 110.2 77 70.1
BcaC02g11653 Brassica carinata HOM05D002388 ORTHO05D004745 2.9e-22 109.4 164 40.9
C04p12700 Brassica napus HOM05D002388 ORTHO05D004745 2.9e-22 109.4 164 40.9
BolC4t22918H Brassica oleracea HOM05D002388 ORTHO05D004745 2.9e-22 109.4 164 40.9
Thhalv10017272m.g Eutrema salsugineum HOM05D002388 ORTHO05D004745 3.8e-22 109.0 169 41.4
Ciclev10003570m.g Citrus clementina HOM05D002388 ORTHO05D004745 6.6e-22 108.2 70 71.4
Gorai.003G184500 Gossypium raimondii HOM05D002388 ORTHO05D004745 6.6e-22 108.2 162 39.5
Carub.0004s1717 Capsella rubella HOM05D002388 ORTHO05D004745 8.6e-22 107.8 161 43.5
Gohir.D03G175500 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.6e-22 107.8 162 39.5
Sp1g27940 Schrenkiella parvula HOM05D002388 ORTHO05D004745 8.6e-22 107.8 168 38.1
BcaB02g09426 Brassica carinata HOM05D002388 ORTHO05D004745 1.9e-21 106.7 166 41.0
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 2.5e-21 106.3 180 40.0
A05p10250 Brassica napus HOM05D002388 ORTHO05D004745 4.3e-21 105.5 164 40.2
BraA05t19965Z Brassica rapa HOM05D002388 ORTHO05D004745 4.3e-21 105.5 164 40.2
Lsat_1_v5_gn_6_95801 Lactuca sativa HOM05D002388 ORTHO05D004745 4.3e-21 105.5 188 37.2
ATR0829G180 Amborella trichopoda HOM05D002388 ORTHO05D004745 5.6e-21 105.1 70 67.1
Medtr8g066470 Medicago truncatula HOM05D002388 ORTHO05D004745 5.6e-21 105.1 177 37.3
CDE02G3148 Ceratophyllum demersum HOM05D002388 ORTHO05D004745 1.2e-20 104.0 70 70.0
AL4G31530 Arabidopsis lyrata HOM05D002388 ORTHO05D004745 1.6e-20 103.6 166 39.2
Haze_09168 Corylus avellana HOM05D002388 ORTHO05D004745 8.0e-20 101.3 153 41.8
AT2G35480 Arabidopsis thaliana HOM05D002388 ORTHO05D004745 1.8e-19 100.1 168 39.9
CARHR129630 Cardamine hirsuta HOM05D002388 ORTHO05D004745 5.2e-19 98.6 166 34.9
Gohir.A03G000041 Gossypium hirsutum HOM05D002388 ORTHO05D004745 8.9e-19 97.8 162 37.7
Pp3c21_10750 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.6e-18 96.3 70 64.3
VMungo0251G2329 Vigna mungo HOM05D002388 ORTHO05D004745 2.6e-18 96.3 158 39.2
Zm00001eb208800 Zea mays HOM05D002388 ORTHO05D004745 3.4e-18 95.9 156 39.1
Ciclev10002623m.g Citrus clementina HOM05D002388 ORTHO05D004745 1.3e-17 94.0 165 41.8
HPP92_025448 Vanilla planifolia HOM05D002388 ORTHO05D004745 1.7e-17 93.6 164 35.4
Pp3c18_19000 Physcomitrium patens HOM05D002388 ORTHO05D004745 2.9e-17 92.8 70 60.0
Sed0016521 Sechium edule HOM05D002388 ORTHO05D004745 1.8e-16 90.1 153 38.6
PGR042G2052 Punica granatum HOM05D002388 ORTHO05D004745 5.4e-16 88.6 168 38.1
Mapoly0149s0010 Marchantia polymorpha HOM05D002388 ORTHO05D004745 7.0e-16 88.2 70 58.6
Phvul.003G283700 Phaseolus vulgaris HOM05D002388 ORTHO05D004745 9.2e-16 87.8 165 36.4
SMO347G0656 Selaginella moellendorffii HOM05D002388 ORTHO05D004745 1.6e-15 87.0 70 61.4
CsaV3_3G048910 Cucumis sativus L. HOM05D002388 ORTHO05D004745 2.0e-15 86.7 163 33.1
AagrBONN_evm.TU.Sc2ySwM_362.667 Anthoceros agrestis HOM05D002388 ORTHO05D004745 3.5e-15 85.9 70 52.9
Sabra03G0064500 Salix brachista HOM05D002388 ORTHO05D004745 3.9e-14 82.4 294 27.6
Lj8C306G7 Lonicera japonica HOM05D002388 ORTHO05D004745 1.6e-12 77.0 68 61.8
Haze_08149 Corylus avellana HOM05D007538 ORTHO05D009464 1.5e-10 70.5 99 38.4
Hma1.2p1_0572F.1_g181210 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.6e-10 69.7 44 70.5
Hma1.2p1_3278F.1_g334816 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.6e-10 69.7 44 70.5
SHI07360 Sapria himalayana HOM05D002388 ORTHO05D000001 7.5e-10 68.2 52 57.7
ECA240G1207 Erigeron canadensis HOM05D002388 ORTHO05D004745 2.9e-09 66.2 145 33.8
ClCG09G011710 Citrullus lanatus HOM05D002388 ORTHO05D004745 1.9e-08 63.5 156 34.0
MELO3C013831.2 Cucumis melo HOM05D002388 ORTHO05D004745 1.9e-08 63.5 121 34.7
Hma1.2p1_0870F.1_g230820 Hydrangea macrophylla HOM05D002388 ORTHO05D004745 2.0e-07 60.1 76 39.5
Lj8A306G57 Lonicera japonica HOM05D002388 ORTHO05D004745 6.0e-07 58.5 121 35.5
Sed0007566 Sechium edule HOM05D002388 ORTHO05D004745 7.8e-07 58.2 137 34.3
Hund11196 Selenicereus undatus HOM05D002388 ORTHO05D004745 5.0e-06 55.5 112 34.8


User provided reference genes

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