Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 1.3e-165 586.3 284 100.0
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 4.3e-153 544.7 282 92.2
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 7.4e-153 543.9 282 92.6
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 7.4e-153 543.9 282 91.5
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.3e-152 543.1 282 91.8
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 6.9e-143 510.8 269 91.1
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 6.3e-136 487.6 281 81.1
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 8.2e-136 487.3 281 81.5
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 1.2e-134 483.4 281 80.4
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 3.4e-134 481.9 277 81.2
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.3e-133 479.9 282 81.6
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 2.9e-133 478.8 282 80.1
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 1.2e-131 473.4 282 78.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 7.9e-131 470.7 281 77.9
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 7.9e-131 470.7 277 78.3
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.3e-130 469.2 281 78.6
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 8.8e-130 467.2 277 80.1
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 1.1e-129 466.8 282 77.7
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 2.6e-129 465.7 277 79.1
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 4.4e-129 464.9 281 76.2
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.3e-128 463.4 281 77.9
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 1.7e-128 463.0 282 76.2
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.2e-128 462.6 281 76.2
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 2.2e-128 462.6 275 78.2
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 2.8e-128 462.2 277 78.3
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.7e-128 461.8 281 77.2
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 3.7e-128 461.8 281 76.9
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 3.7e-128 461.8 282 78.4
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 1.4e-127 459.9 282 78.0
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.8e-127 459.5 281 76.9
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 2.4e-127 459.1 281 76.9
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.4e-127 459.1 281 76.9
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 2.4e-127 459.1 281 77.2
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 3.1e-127 458.8 282 76.6
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 3.1e-127 458.8 282 77.3
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 3.1e-127 458.8 277 75.8
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 5.3e-127 458.0 281 77.9
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 7.0e-127 457.6 277 76.9
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 1.2e-126 456.8 281 76.5
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 1.5e-126 456.4 281 77.2
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.0e-126 456.1 282 76.6
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 5.9e-126 454.5 281 76.2
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 1.0e-125 453.8 282 75.5
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.3e-125 453.4 282 75.5
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 2.2e-125 452.6 282 76.6
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 5.0e-125 451.4 281 77.2
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 8.5e-125 450.7 281 76.9
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 8.5e-125 450.7 282 74.8
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 2.5e-124 449.1 282 75.5
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 7.2e-124 447.6 285 74.7
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 9.4e-124 447.2 281 76.2
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 1.2e-123 446.8 276 75.7
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 1.2e-123 446.8 281 75.8
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 1.2e-123 446.8 282 76.2
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 1.2e-123 446.8 281 75.8
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.6e-123 446.4 277 77.6
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 1.6e-123 446.4 284 73.9
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 2.1e-123 446.0 281 76.2
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 4.7e-123 444.9 281 75.4
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 1.8e-122 443.0 275 76.7
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 2.3e-122 442.6 281 74.7
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 5.2e-122 441.4 282 74.8
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 8.8e-122 440.7 286 74.5
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 1.1e-121 440.3 281 74.7
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 2.0e-121 439.5 281 71.9
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 2.0e-121 439.5 270 77.8
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 3.3e-121 438.7 282 72.3
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 3.3e-121 438.7 282 72.3
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 4.4e-121 438.3 282 71.6
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 4.4e-121 438.3 281 75.4
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 4.4e-121 438.3 277 75.1
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 5.7e-121 438.0 282 71.6
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 5.7e-121 438.0 282 71.6
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.3e-120 436.8 281 75.1
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 2.2e-120 436.0 281 72.2
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.8e-120 435.6 281 71.9
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 2.8e-120 435.6 270 77.0
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 6.3e-120 434.5 281 71.5
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 8.2e-120 434.1 275 75.6
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.8e-119 433.0 282 72.0
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 9.1e-119 430.6 281 71.2
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 2.0e-118 429.5 312 67.3
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 1.7e-117 426.4 295 71.2
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 2.2e-117 426.0 247 78.9
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 2.9e-117 425.6 282 70.2
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 8.5e-117 424.1 309 65.7
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 8.5e-117 424.1 284 71.5
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 8.5e-117 424.1 284 71.5
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 2.5e-116 422.5 290 68.6
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 2.5e-116 422.5 271 74.5
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 4.2e-116 421.8 279 70.6
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 1.8e-114 416.4 269 74.3
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 2.6e-113 412.5 270 72.2
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 3.7e-112 408.7 263 75.3
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.2e-110 403.7 251 76.1
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 6.5e-109 397.9 277 68.2
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 6.5e-109 397.9 281 66.9
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 8.5e-109 397.5 237 78.5
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 1.5e-105 386.7 245 75.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 1.7e-104 383.3 251 69.3
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.7e-104 383.3 251 68.9
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 1.1e-103 380.6 263 68.8
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 8.6e-101 370.9 264 66.3
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 5.4e-95 351.7 248 65.3
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 4.6e-94 348.6 284 59.5
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 7.8e-94 347.8 418 47.4
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.9e-92 343.2 190 81.1
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 1.2e-89 334.0 283 56.9
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 3.5e-86 322.4 406 46.3
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 4.6e-86 322.0 281 57.3
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 6.2e-83 311.6 266 59.0
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 1.1e-79 300.8 264 56.8
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.6e-78 297.0 167 79.6
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 1.0e-77 294.3 167 79.0
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 1.1e-76 290.8 176 75.0
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 1.9e-76 290.0 143 89.5
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 1.2e-75 287.3 307 50.5
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 4.4e-73 278.9 281 49.1
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 2.9e-72 276.2 176 68.8
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 2.8e-67 259.6 295 47.8
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 6.8e-66 255.0 161 73.3
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 4.0e-58 229.2 249 48.6
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 8.4e-56 221.5 290 42.1
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.9e-55 220.3 147 63.9
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 4.3e-52 209.1 135 74.8
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 9.0e-50 201.4 248 45.6
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 6.0e-46 188.7 143 66.4
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 7.9e-46 188.3 155 61.3
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 8.1e-43 178.3 221 42.5
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 6.7e-37 158.7 77 93.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 3.4e-33 146.4 111 61.3
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.0e-29 133.3 72 77.8
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.0e-29 133.3 72 77.8
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 5.7e-28 129.0 70 80.0
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 1.4e-21 107.8 80 62.5
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 8.8e-21 105.1 92 56.5
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 1.3e-19 101.3 80 66.2
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 1.7e-19 100.9 75 65.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.2e-19 100.5 86 60.5
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.9e-16 90.1 92 54.3
Actinidia14980 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.2e-14 84.7 93 47.3
GSVIVG01029848001 Vitis vinifera HOM05D000172 ORTHO05D000273 8.8e-13 78.6 55 70.9
CBR_g37149 Chara braunii HOM05D005341 ORTHO05D017343 5.5e-07 59.3 169 26.6
SMO119G0520 Selaginella moellendorffii HOM05D019566 ORTHO05D017343 5.5e-07 59.3 103 34.0
MCO11G144 Micromonas commoda HOM05D019566 ORTHO05D017343 1.2e-06 58.2 127 31.5
SEGI_31998 Sequoiadendron giganteum HOM05D019566 ORTHO05D017343 2.7e-06 57.0 103 33.0


User provided reference genes

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