Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1298.26 Capsicum annuum HOM05D034039 ORTHO05D009044 5.2e-295 1016.9 493 100.0
PGSC0003DMG400046724 Solanum tuberosum HOM05D034039 ORTHO05D009044 1.2e-163 580.5 408 72.8
PGSC0003DMG400030538 Solanum tuberosum HOM05D034039 ORTHO05D009044 2.1e-147 526.6 430 66.3
Ciclev10030189m.g Citrus clementina HOM05D007346 ORTHO05D009044 4.1e-26 123.6 438 27.2
Cfa005319 Carpinus fangiana HOM05D007346 ORTHO05D009044 4.9e-19 100.1 416 26.2
Cfa005279 Carpinus fangiana HOM05D007346 ORTHO05D009044 1.1e-18 99.0 418 26.8
Duzib132G1061 Durio zibethinus HOM05D007346 ORTHO05D009044 4.6e-17 93.6 415 25.8
CAN.G1334.17 Capsicum annuum HOM05D000541 ORTHO05D000137 6.0e-17 93.2 112 50.0
CAN.G1334.14 Capsicum annuum HOM05D000541 ORTHO05D000137 1.7e-16 91.7 112 50.0
PSO170G4594 Papaver somniferum HOM05D000151 ORTHO05D000074 2.3e-16 91.3 425 26.1
FAN20G2910 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.0e-16 90.9 414 27.8
RcHm_v2.0_Chr4g0393001 Rosa chinensis HOM05D007346 ORTHO05D009044 1.1e-15 89.0 241 29.0
Haze_02114 Corylus avellana HOM05D007346 ORTHO05D009044 2.5e-15 87.8 424 24.3
TAR626G0819 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.6e-14 85.1 234 29.1
TAR636G0219 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.6e-14 85.1 241 28.6
TAR636G2580 Trochodendron aralioides HOM05D000151 ORTHO05D000074 1.6e-14 85.1 241 28.6
RcHm_v2.0_Chr4g0393391 Rosa chinensis HOM05D007346 ORTHO05D009044 8.1e-14 82.8 239 28.0
RcHm_v2.0_Chr5g0063131 Rosa chinensis HOM05D007346 ORTHO05D009044 8.1e-14 82.8 279 29.4
FvH4_4g02080 Fragaria vesca HOM05D007346 ORTHO05D009044 4.0e-13 80.5 443 24.6
TAR525G0003 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.0e-13 80.5 230 28.7
TAR626G0415 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.0e-13 80.5 230 28.7
FvH4_4g01970 Fragaria vesca HOM05D007346 ORTHO05D009044 2.0e-12 78.2 243 29.2
RcHm_v2.0_Chr4g0393471 Rosa chinensis HOM05D007346 ORTHO05D009044 2.6e-12 77.8 230 28.3
FAN21G1548 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.4e-12 77.0 241 30.7
Cfa012527 Carpinus fangiana HOM05D007346 ORTHO05D009044 5.8e-12 76.6 336 25.9
Haze_02115 Corylus avellana HOM05D007346 ORTHO05D009044 7.6e-12 76.3 239 28.5
TAR636G0813 Trochodendron aralioides HOM05D000151 ORTHO05D000074 7.6e-12 76.3 241 28.2
RcHm_v2.0_Chr4g0388171 Rosa chinensis HOM05D007346 ORTHO05D009044 1.3e-11 75.5 460 24.1
FAN12G0105 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.2e-11 74.7 243 28.8
FAN25G0093 Fragaria x ananassa HOM05D007346 ORTHO05D009044 2.9e-11 74.3 199 33.7
FvH4_2g03062 Fragaria vesca HOM05D007346 ORTHO05D009044 3.8e-11 73.9 243 28.4
Manes.05G141800 Manihot esculenta HOM05D000151 ORTHO05D000074 4.9e-11 73.6 251 25.9
QL05p064445 Quercus lobata HOM05D000151 ORTHO05D000074 4.9e-11 73.6 414 24.6
TWI56G0068 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 4.9e-11 73.6 248 26.2
Cfa005278 Carpinus fangiana HOM05D007346 ORTHO05D009044 6.4e-11 73.2 201 32.3
FAN24G3266 Fragaria x ananassa HOM05D007346 ORTHO05D009044 6.4e-11 73.2 401 25.2
RcHm_v2.0_Chr6g0247891 Rosa chinensis HOM05D007346 ORTHO05D009044 8.4e-11 72.8 236 28.8
FvH4_4g02090 Fragaria vesca HOM05D007346 ORTHO05D009044 1.1e-10 72.4 424 24.8
SGA_v2.0_scaffold32G13296 Striga asiatica HOM05D028864 ORTHO05D009044 1.1e-10 72.4 244 27.5
FAN24G2319 Fragaria x ananassa HOM05D007346 ORTHO05D009044 1.9e-10 71.6 243 28.0
Prupe.8G152400 Prunus persica HOM05D007346 ORTHO05D009044 1.9e-10 71.6 190 32.6
FvH4_2g03731 Fragaria vesca HOM05D007346 ORTHO05D009044 2.4e-10 71.2 441 24.5
FvH4_4g01551 Fragaria vesca HOM05D007346 ORTHO05D009044 3.2e-10 70.9 242 30.2
SGA_v2.0_scaffold351G49652 Striga asiatica HOM05D000151 ORTHO05D000074 3.2e-10 70.9 436 24.3
FAN12G2737 Fragaria x ananassa HOM05D007346 ORTHO05D009044 4.2e-10 70.5 246 28.9
Aqoxy3G03100 Aquilegia oxysepala HOM05D007346 ORTHO05D000074 5.4e-10 70.1 154 32.5
FAN18G1252 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.3e-10 69.3 420 24.3
Aqoxy5G01075 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 2.7e-09 67.8 136 32.4
Eucgr.B03923 Eucalyptus grandis HOM05D000151 ORTHO05D000074 2.7e-09 67.8 147 32.0
Thecc.02G045400 Theobroma cacao HOM05D007346 ORTHO05D009044 2.7e-09 67.8 417 22.3
TWI12G0155 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 3.5e-09 67.4 147 31.3
TAR628G1200 Trochodendron aralioides HOM05D000151 ORTHO05D000074 4.6e-09 67.0 248 26.6
Aqoxy3G03868 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 6.0e-09 66.6 198 29.8
Peaxi162Scf00159g00092 Petunia axillaris HOM05D001761 ORTHO05D001719 6.0e-09 66.6 58 63.8
Aqoxy3G03869 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 7.8e-09 66.2 201 28.9
TWI56G0047 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 7.8e-09 66.2 155 31.0
FvH4_4g01590 Fragaria vesca HOM05D007346 ORTHO05D009044 1.3e-08 65.5 240 28.3
Cpa.g.sc62.77 Carica papaya HOM05D007346 ORTHO05D009044 1.7e-08 65.1 428 22.2
Aqoxy3G03099 Aquilegia oxysepala HOM05D007346 ORTHO05D009044 3.0e-08 64.3 253 26.1
FAN15G1854 Fragaria x ananassa HOM05D007346 ORTHO05D009044 3.0e-08 64.3 394 25.4
PSO210G2694 Papaver somniferum HOM05D000151 ORTHO05D000074 5.1e-08 63.5 143 31.5
Manes.07G048900 Manihot esculenta HOM05D000151 ORTHO05D000074 8.7e-08 62.8 233 24.5
Rhsim06G0010000 Rhododendron simsii HOM05D000151 ORTHO05D000074 8.7e-08 62.8 460 22.6
Thecc.02G045200 Theobroma cacao HOM05D007346 ORTHO05D009044 8.7e-08 62.8 437 22.2
Aqoxy3G03870 Aquilegia oxysepala HOM05D007346 ORTHO05D016562 1.1e-07 62.4 123 35.0
Nn7g38181 Nelumbo nucifera HOM05D001286 ORTHO05D000440 1.1e-07 62.4 140 31.4
QL04p013569 Quercus lobata HOM05D000151 ORTHO05D000074 1.5e-07 62.0 426 23.9
SGA_v2.0_scaffold32G13300 Striga asiatica HOM05D028864 ORTHO05D009044 1.5e-07 62.0 330 22.7
Haze_02452 Corylus avellana HOM05D000151 ORTHO05D000074 1.9e-07 61.6 368 25.0
Cc11_g10930 Coffea canephora HOM05D000151 ORTHO05D000074 2.5e-07 61.2 425 24.2
Dinv40803 Davidia involucrata HOM05D000151 ORTHO05D000074 2.5e-07 61.2 418 22.0
Manes.07G048850 Manihot esculenta HOM05D000151 ORTHO05D000074 2.5e-07 61.2 191 27.7
SalBow4G2935 Salvia bowleyana HOM05D001761 ORTHO05D001719 3.3e-07 60.8 71 49.3
FAN22G0819 Fragaria x ananassa HOM05D007346 ORTHO05D009044 5.6e-07 60.1 454 22.7
Nn1g04037 Nelumbo nucifera HOM05D000151 ORTHO05D000074 5.6e-07 60.1 237 25.3
SGA_v2.0_scaffold32G13304 Striga asiatica HOM05D028864 ORTHO05D009044 5.6e-07 60.1 240 26.2
FvH4_5g33551 Fragaria vesca HOM05D007346 ORTHO05D009044 7.3e-07 59.7 140 29.3
MD16G1228400 Malus domestica HOM05D000151 ORTHO05D000074 7.3e-07 59.7 237 27.0
Peaxi162Scf00522g00314 Petunia axillaris HOM05D001761 ORTHO05D001719 7.3e-07 59.7 41 75.6
Sc08g0008230 Simmondsia chinensis HOM05D001761 ORTHO05D001719 7.3e-07 59.7 41 75.6
Solyc05g008010.3 Solanum lycopersicum HOM05D001761 ORTHO05D001719 7.3e-07 59.7 41 75.6
Sopen05g003860 Solanum pennellii HOM05D001761 ORTHO05D001719 7.3e-07 59.7 41 75.6
PGSC0003DMG400030537 Solanum tuberosum HOM05D001761 ORTHO05D001719 7.3e-07 59.7 41 75.6
FvH4_2g04271 Fragaria vesca HOM05D007346 ORTHO05D009044 9.6e-07 59.3 244 25.8
FAN15G1511 Fragaria x ananassa HOM05D007346 ORTHO05D009044 9.6e-07 59.3 334 24.6
QL04p012604 Quercus lobata HOM05D000151 ORTHO05D000074 9.6e-07 59.3 422 25.4
QL04p019119 Quercus lobata HOM05D000151 ORTHO05D000074 9.6e-07 59.3 143 28.7
ClCG03G015870 Citrullus lanatus HOM05D002422 ORTHO05D002569 1.3e-06 58.9 42 73.8
TWI09G0382 Tripterygium wilfordii HOM05D000151 ORTHO05D000074 1.3e-06 58.9 228 25.4
Hma1.2p1_1074F.1_g254410 Hydrangea macrophylla HOM05D001761 ORTHO05D001719 1.6e-06 58.5 55 61.8
MBI17_g17509_MAGBIO Magnolia biondii HOM05D000151 ORTHO05D000074 2.1e-06 58.2 136 32.4
Nitab4.5_0001492g0010 Nicotiana tabacum HOM05D001761 ORTHO05D001719 2.1e-06 58.2 42 73.8
Nitab4.5_0004011g0040 Nicotiana tabacum HOM05D001761 ORTHO05D001719 2.1e-06 58.2 42 73.8
PGR031G1698 Punica granatum HOM05D000151 ORTHO05D000074 2.1e-06 58.2 136 31.6
RcHm_v2.0_Chr6g0254551 Rosa chinensis HOM05D007346 ORTHO05D009044 2.1e-06 58.2 247 25.5
Actinidia29892 Actinidia chinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Aa31LG3G12530 Aethionema arabicum HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Aa31LG8G16710 Aethionema arabicum HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
CSS0009739 Camellia sinensis var. sinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
CSS0023177 Camellia sinensis var. sinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
CSS0038328 Camellia sinensis var. sinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
CiPaw.03G220100 Carya illinoinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Manes.03G030300 Manihot esculenta HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Hund07264 Selenicereus undatus HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Sc14g0000840 Simmondsia chinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Sc18g0001780 Simmondsia chinensis HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Thecc.09G094800 Theobroma cacao HOM05D001761 ORTHO05D001719 2.8e-06 57.8 41 73.2
Actinidia39750 Actinidia chinensis HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 70.7
Aqoxy2G03845 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.6e-06 57.4 143 31.5
Aqoxy6G02936 Aquilegia oxysepala HOM05D000151 ORTHO05D000074 3.6e-06 57.4 125 32.0
MSTRG.5011 Avicennia marina HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
ClCG11G001890 Citrullus lanatus HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Haze_25866 Corylus avellana HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
MELO3C004613.2 Cucumis melo HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
MELO3C015438.2 Cucumis melo HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
CsaV3_1G040080 Cucumis sativus L. HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
CsaV3_2G001620 Cucumis sativus L. HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
CsaV3_UNG050350 Cucumis sativus L. HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Duzib150G0170 Durio zibethinus HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Duzib168G1316 Durio zibethinus HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Duzib187G0972 Durio zibethinus HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gohir.A05G027900 Gossypium hirsutum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gohir.A06G070300 Gossypium hirsutum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gohir.D05G029700 Gossypium hirsutum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gohir.D06G068900 Gossypium hirsutum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gohir.D08G265300 Gossypium hirsutum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gorai.004G283300 Gossypium raimondii HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gorai.009G029900 Gossypium raimondii HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Gorai.010G080500 Gossypium raimondii HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Potri.002G015700 Populus trichocarpa HOM05D000151 ORTHO05D000074 3.6e-06 57.4 129 31.8
Potri.018G070100 Populus trichocarpa HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
PGR102G1967 Punica granatum HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
Sabra18G0061400 Salix brachista HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
SGA_v2.0_scaffold95G28789 Striga asiatica HOM05D001761 ORTHO05D001719 3.6e-06 57.4 41 73.2
CAN.G1298.29 Capsicum annuum HOM05D001761 ORTHO05D001719 4.8e-06 57.0 41 73.2
COL.COLO4_17943 Corchorus olitorius HOM05D007346 ORTHO05D009044 4.8e-06 57.0 346 24.3
Gohir.A08G244400 Gossypium hirsutum HOM05D001761 ORTHO05D001719 4.8e-06 57.0 41 70.7
Manes.07G048800 Manihot esculenta HOM05D000151 ORTHO05D000074 4.8e-06 57.0 191 26.7
CAN.G1241.10 Capsicum annuum HOM05D001761 ORTHO05D001719 6.2e-06 56.6 41 73.2
FvH4_6g22212 Fragaria vesca HOM05D010931 ORTHO05D016562 6.2e-06 56.6 145 26.9
Nitab4.5_0000540g0140 Nicotiana tabacum HOM05D001761 ORTHO05D001719 6.2e-06 56.6 41 73.2
QL04p012573 Quercus lobata HOM05D000151 ORTHO05D000074 6.2e-06 56.6 410 22.0
Solyc12g008720.2 Solanum lycopersicum HOM05D001761 ORTHO05D001719 6.2e-06 56.6 41 73.2
Sopen12g003650 Solanum pennellii HOM05D001761 ORTHO05D001719 6.2e-06 56.6 41 73.2
PGSC0003DMG400000345 Solanum tuberosum HOM05D001761 ORTHO05D001719 6.2e-06 56.6 41 73.2
BcaB03g16761 Brassica carinata HOM05D001761 ORTHO05D001719 8.1e-06 56.2 42 71.4
Gohir.A13G194100 Gossypium hirsutum HOM05D001761 ORTHO05D001719 8.1e-06 56.2 41 70.7
Gohir.D13G199900 Gossypium hirsutum HOM05D001761 ORTHO05D001719 8.1e-06 56.2 41 70.7
Gorai.013G228700 Gossypium raimondii HOM05D001761 ORTHO05D001719 8.1e-06 56.2 41 70.7
Nn8g38952 Nelumbo nucifera HOM05D001761 ORTHO05D001719 8.1e-06 56.2 41 73.2
Peaxi162Scf00498g00025 Petunia axillaris HOM05D001761 ORTHO05D001719 8.1e-06 56.2 41 70.7
RcHm_v2.0_Chr2g0153831 Rosa chinensis HOM05D006368 ORTHO05D006739 8.1e-06 56.2 407 23.6
RcHm_v2.0_Chr3g0476221 Rosa chinensis HOM05D024214 ORTHO05D016562 8.1e-06 56.2 145 27.6


User provided reference genes

Program Settings