Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 2.4e-45 185.7 131 100.0
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 1.7e-35 152.9 115 86.1
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 3.9e-24 115.2 97 67.0
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 1.1e-13 80.5 65 98.5
CAN.G134.9 Capsicum annuum HOM05D001070 ORTHO05D002096 4.1e-13 78.6 64 98.4
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 1.2e-12 77.0 69 88.4
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 7.6e-12 74.3 64 65.6
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 7.6e-12 74.3 64 65.6
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 7.6e-12 74.3 64 65.6
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 2.2e-11 72.8 64 64.1
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.2e-11 72.8 64 64.1
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 2.9e-11 72.4 63 95.2
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 3.8e-11 72.0 63 65.1
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.8e-11 72.0 65 63.1
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 5.0e-11 71.6 65 90.8
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 5.0e-11 71.6 64 62.5
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 8.4e-11 70.9 64 64.1
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 1.9e-10 69.7 64 62.5
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.2e-10 68.9 64 62.5
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 4.2e-10 68.6 38 84.2
Nitab4.5_0006096g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 5.5e-10 68.2 37 86.5
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 7.2e-10 67.8 36 91.7
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 7.2e-10 67.8 38 84.2
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 7.2e-10 67.8 38 84.2
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 7.2e-10 67.8 38 84.2
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.2e-09 67.0 46 73.9
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.2e-09 67.0 46 73.9
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 4.6e-09 65.1 38 81.6
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 6.1e-09 64.7 38 78.9
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.9e-09 64.3 62 59.7
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.3e-08 63.5 38 78.9
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 1.8e-08 63.2 31 93.5
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.8e-08 63.2 47 70.2
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 3.0e-08 62.4 38 73.7
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 5.1e-08 61.6 31 90.3
Nitab4.5_0008813g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 8.7e-08 60.8 31 87.1
Peaxi162Scf00475g00112 Petunia axillaris HOM05D007952 ORTHO05D004271 8.7e-08 60.8 31 83.9
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 1.1e-07 60.5 31 90.3
Peaxi162Scf00136g00086 Petunia axillaris HOM05D007952 ORTHO05D004271 1.5e-07 60.1 31 90.3
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 1.9e-07 59.7 28 96.4
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.9e-07 59.7 28 96.4
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 4.3e-07 58.5 32 84.4
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.3e-07 58.5 60 56.7
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 4.3e-07 58.5 60 56.7
Glyma.19G187300 Glycine max HOM05D007952 ORTHO05D004271 1.6e-06 56.6 31 83.9
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.8e-06 55.8 29 89.7
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.8e-06 55.8 64 53.1
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 6.3e-06 54.7 28 89.3


User provided reference genes

Program Settings