Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1297.4 Capsicum annuum HOM05D005866 ORTHO05D007078 4.9e-119 431.4 263 100.0
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 2.2e-95 352.8 256 85.9
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 6.5e-95 351.3 256 85.5
Solyc10g085080.3 Solanum lycopersicum HOM05D005866 ORTHO05D007078 1.7e-87 326.6 272 78.7
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 8.0e-69 264.6 219 81.3
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.4e-65 253.8 227 78.4
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 6.0e-56 221.9 253 62.5
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 7.8e-56 221.5 248 58.5
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 2.3e-55 219.9 253 62.1
Peaxi162Scf00141g00718 Petunia axillaris HOM05D005866 ORTHO05D007078 5.6e-54 215.3 253 64.0
Peaxi162Scf00009g01923 Petunia axillaris HOM05D005866 ORTHO05D007078 9.8e-51 204.5 240 60.0
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-48 197.6 255 59.6
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.2e-48 197.6 255 59.6
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 1.2e-48 197.6 254 57.9
GSVIVG01034004001 Vitis vinifera HOM05D000012 ORTHO05D000567 2.7e-48 196.4 261 59.8
Nitab4.5_0000008g0810 Nicotiana tabacum HOM05D005866 ORTHO05D007078 1.1e-46 191.0 261 60.5
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 4.3e-46 189.1 212 63.2
Haze_20956 Corylus avellana HOM05D005866 ORTHO05D007078 4.3e-46 189.1 258 56.6
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 5.6e-46 188.7 257 56.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 7.3e-46 188.3 252 58.7
Duzib128G1899 Durio zibethinus HOM05D005866 ORTHO05D007078 7.3e-46 188.3 260 56.5
Nitab4.5_0001837g0050 Nicotiana tabacum HOM05D005866 ORTHO05D007078 9.5e-46 188.0 263 58.6
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.6e-45 187.2 268 44.8
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 1.6e-45 187.2 239 49.8
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 2.1e-45 186.8 260 50.8
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.8e-45 186.4 256 48.0
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.6e-45 186.0 253 55.7
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 1.4e-44 184.1 260 56.5
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 1.4e-44 184.1 254 46.5
Sopen09g007090 Solanum pennellii HOM05D005866 ORTHO05D007078 1.4e-44 184.1 256 59.8
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.8e-44 183.7 259 54.4
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 5.2e-44 182.2 260 55.8
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 8.9e-44 181.4 216 61.1
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.6e-43 179.9 260 51.5
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 3.4e-43 179.5 225 63.6
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.4e-43 179.1 258 45.3
Nn2g11373 Nelumbo nucifera HOM05D005866 ORTHO05D007078 5.8e-43 178.7 214 64.5
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 5.8e-43 178.7 256 53.9
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 9.9e-43 177.9 211 62.6
Manes.09G102400 Manihot esculenta HOM05D005866 ORTHO05D007078 9.9e-43 177.9 254 55.1
unitig_578.g15896 Utricularia gibba HOM05D005866 ORTHO05D007078 9.9e-43 177.9 260 55.4
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 1.3e-42 177.6 260 44.6
CAN.G338.58 Capsicum annuum HOM05D005866 ORTHO05D007078 1.3e-42 177.6 263 56.7
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.7e-42 177.2 239 51.9
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 1.7e-42 177.2 256 53.9
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 2.9e-42 176.4 263 48.7
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 3.7e-42 176.0 259 44.4
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 4.9e-42 175.6 206 50.0
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 4.9e-42 175.6 258 48.4
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 6.4e-42 175.3 192 63.5
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 6.4e-42 175.3 211 61.1
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 6.4e-42 175.3 266 53.8
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 8.3e-42 174.9 211 62.1
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 8.3e-42 174.9 262 54.2
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 8.3e-42 174.9 262 54.2
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 8.3e-42 174.9 263 46.0
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 1.1e-41 174.5 253 47.0
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 1.4e-41 174.1 260 44.2
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 1.4e-41 174.1 251 54.6
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.9e-41 173.7 241 46.5
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 3.2e-41 172.9 255 55.7
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 4.1e-41 172.6 208 60.6
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 4.1e-41 172.6 258 43.8
Gohir.A01G225500 Gossypium hirsutum HOM05D005866 ORTHO05D007078 4.1e-41 172.6 259 53.7
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 5.4e-41 172.2 262 53.4
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 5.4e-41 172.2 263 48.7
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 7.1e-41 171.8 249 55.4
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 7.1e-41 171.8 258 43.8
PGSC0003DMG400020319 Solanum tuberosum HOM05D005866 ORTHO05D007078 9.2e-41 171.4 258 57.0
Ciclev10012537m.g Citrus clementina HOM05D005866 ORTHO05D007078 2.1e-40 170.2 253 56.1
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 2.1e-40 170.2 257 47.9
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 4.6e-40 169.1 257 47.5
Solyc09g014215.2 Solanum lycopersicum HOM05D005866 ORTHO05D007078 6.0e-40 168.7 266 56.0
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 7.8e-40 168.3 237 46.0
Sc01g0006840 Simmondsia chinensis HOM05D005866 ORTHO05D007078 7.8e-40 168.3 248 56.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 1.3e-39 167.5 262 54.2
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 1.3e-39 167.5 262 53.1
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 1.7e-39 167.2 258 44.2
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.7e-39 167.2 263 52.1
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 1.7e-39 167.2 240 46.7
COL.COLO4_14593 Corchorus olitorius HOM05D005866 ORTHO05D007078 2.3e-39 166.8 258 54.7
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 2.3e-39 166.8 256 44.9
Eucgr.B02792 Eucalyptus grandis HOM05D005866 ORTHO05D007078 3.0e-39 166.4 264 48.5
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.9e-38 163.7 247 43.3
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.9e-38 163.7 239 44.8
Cc06_g01630 Coffea canephora HOM05D005866 ORTHO05D007078 4.3e-38 162.5 253 54.5
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 4.3e-38 162.5 207 61.8
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 1.6e-37 160.6 258 43.4
DCAR_015452 Daucus carota HOM05D005866 ORTHO05D007078 1.6e-37 160.6 248 56.0
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.6e-37 159.5 206 47.6
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 6.2e-37 158.7 221 46.2
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 8.1e-37 158.3 241 56.4
SGA_v2.0_scaffold85G26760 Striga asiatica HOM05D005866 ORTHO05D007078 1.1e-36 157.9 143 59.4
Ah.12g060060 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.8e-36 157.1 245 51.8
Atru.chr8.2203 Acer truncatum HOM05D005866 ORTHO05D007078 4.0e-36 156.0 264 42.4
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 9.9e-35 151.4 215 44.7
TPR.G5230 Trifolium pratense HOM05D005866 ORTHO05D007078 9.9e-35 151.4 255 51.8
Medtr4g015010 Medicago truncatula HOM05D005866 ORTHO05D007078 2.2e-34 150.2 254 49.6
TAR633G2503 Trochodendron aralioides HOM05D005866 ORTHO05D007078 6.4e-34 148.7 129 64.3
CANSAT35G0638 Cannabis sativa HOM05D005866 ORTHO05D007078 1.4e-33 147.5 259 51.4
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 1.9e-33 147.1 225 43.6
Migut.J00221 Erythranthe guttata HOM05D005866 ORTHO05D007078 5.4e-33 145.6 264 50.4
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 9.2e-33 144.8 215 46.0
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 2.1e-32 143.7 225 54.2
THA.LOC104816219 Tarenaya hassleriana HOM05D005866 ORTHO05D007078 7.8e-32 141.7 254 50.0
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 1.7e-31 140.6 213 43.7
Gorai.002G261300 Gossypium raimondii HOM05D005866 ORTHO05D007078 1.7e-31 140.6 259 49.4
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 8.7e-31 138.3 255 40.0
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 8.7e-31 138.3 255 40.0
PSO384G0902 Papaver somniferum HOM05D005866 ORTHO05D007078 1.1e-30 137.9 246 49.2
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 1.5e-30 137.5 211 44.1
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 5.6e-30 135.6 245 42.4
RcHm_v2.0_Chr3g0463811 Rosa chinensis HOM05D005866 ORTHO05D007078 7.3e-30 135.2 148 53.4
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 2.8e-29 133.3 261 41.8
Actinidia05342 Actinidia chinensis HOM05D005866 ORTHO05D007078 5.2e-28 129.0 192 52.6
Lj2P1203T18 Lonicera japonica HOM05D005866 ORTHO05D007078 1.2e-27 127.9 144 53.5
Glyma.03G077300 Glycine max HOM05D005866 ORTHO05D007078 2.0e-27 127.1 244 49.6
PSO339G5866 Papaver somniferum HOM05D005866 ORTHO05D007078 9.3e-25 118.2 186 53.8
EL10Ac6g13875 Beta vulgaris HOM05D005866 ORTHO05D007078 2.1e-24 117.1 126 52.4
Dinv37082 Davidia involucrata HOM05D005866 ORTHO05D007078 5.8e-19 99.0 99 58.6
ATR0618G104 Amborella trichopoda HOM05D005866 ORTHO05D007078 7.6e-19 98.6 126 43.7
Actinidia01118 Actinidia chinensis HOM05D005866 ORTHO05D007078 1.4e-17 94.4 72 68.1
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 2.3e-15 87.0 223 28.7
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 1.5e-14 84.3 214 26.2
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 5.6e-14 82.4 198 27.8
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.1e-12 78.2 211 28.4
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 9.9e-11 71.6 187 27.3
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 7.1e-09 65.5 196 25.0
Ah.07g199780 Amaranthus hybridus HOM05D005866 ORTHO05D007078 1.9e-06 57.4 82 42.7
HanXRQChr10g0287001 Helianthus annuus HOM05D005866 ORTHO05D007078 3.3e-06 56.6 83 42.2
SGA_v2.0_scaffold1443G53951 Striga asiatica HOM05D005866 ORTHO05D007078 5.6e-06 55.8 82 42.7


User provided reference genes

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