Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G129.55 Capsicum annuum HOM05D004204 ORTHO05D005069 2.9e-135 485.3 262 100.0
CAN.G342.2 Capsicum annuum HOM05D004204 ORTHO05D005069 2.5e-131 472.2 262 96.9
Peaxi162Scf00402g00091 Petunia axillaris HOM05D004204 ORTHO05D005069 2.4e-129 465.7 262 95.0
Nitab4.5_0000468g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 9.0e-129 463.8 262 93.9
Nitab4.5_0002319g0030 Nicotiana tabacum HOM05D004204 ORTHO05D005069 5.8e-128 461.1 262 93.1
Nitab4.5_0000050g0140 Nicotiana tabacum HOM05D004204 ORTHO05D005069 7.6e-128 460.7 262 93.5
PGSC0003DMG400028976 Solanum tuberosum HOM05D004204 ORTHO05D005069 7.6e-128 460.7 262 94.3
Sopen01g033260 Solanum pennellii HOM05D004204 ORTHO05D005069 9.9e-128 460.3 262 93.9
Peaxi162Scf00245g00083 Petunia axillaris HOM05D004204 ORTHO05D005069 1.7e-127 459.5 262 93.9
Solyc01g073690.2 Solanum lycopersicum HOM05D004204 ORTHO05D005069 2.9e-127 458.8 262 93.5
Nitab4.5_0010277g0010 Nicotiana tabacum HOM05D004204 ORTHO05D005069 8.4e-127 457.2 262 92.7
Gohir.A05G377700 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 86.6
Gohir.D04G038000 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 86.6
Gorai.012G042900 Gossypium raimondii HOM05D004204 ORTHO05D005069 9.0e-121 437.2 262 86.6
Manes.07G088000 Manihot esculenta HOM05D004204 ORTHO05D005069 1.5e-120 436.4 262 87.4
Duzib264G0780 Durio zibethinus HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 86.3
Nn6g34434 Nelumbo nucifera HOM05D004204 ORTHO05D005069 3.4e-120 435.3 262 86.3
CSS0017946 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 7.6e-120 434.1 262 87.4
Duzib187G0241 Durio zibethinus HOM05D004204 ORTHO05D005069 9.9e-120 433.7 262 86.3
Eucgr.K01191 Eucalyptus grandis HOM05D004204 ORTHO05D005069 1.3e-119 433.3 262 87.0
MSTRG.12090 Avicennia marina HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 87.0
Thecc.01G158400 Theobroma cacao HOM05D004204 ORTHO05D005069 2.2e-119 432.6 262 85.9
COL.COLO4_33705 Corchorus olitorius HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 86.3
Sed0014187 Sechium edule HOM05D004204 ORTHO05D005069 8.4e-119 430.6 262 84.7
CSS0030406 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 1.9e-118 429.5 262 86.6
CiPaw.03G195700 Carya illinoinensis HOM05D004204 ORTHO05D005069 2.4e-118 429.1 262 85.1
Gohir.D11G063900 Gossypium hirsutum HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 85.9
Gorai.007G069100 Gossypium raimondii HOM05D004204 ORTHO05D005069 3.2e-118 428.7 262 85.9
Cpa.g.sc50.63 Carica papaya HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.1
ClCG09G022270 Citrullus lanatus HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 84.0
Eucgr.A01954 Eucalyptus grandis HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.5
Prupe.3G169600 Prunus persica HOM05D004204 ORTHO05D005069 5.4e-118 427.9 262 85.1
unitig_8.g4657 Utricularia gibba HOM05D004204 ORTHO05D005069 7.1e-118 427.6 262 85.5
MELO3C014458.2 Cucumis melo HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 83.6
Gohir.A11G059800 Gossypium hirsutum HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 85.5
Sed0024868 Sechium edule HOM05D004204 ORTHO05D005069 9.3e-118 427.2 262 84.4
Cfa021389 Carpinus fangiana HOM05D003004 ORTHO05D003860 1.2e-117 426.8 262 85.5
Duzib147G0786 Durio zibethinus HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 84.0
Sed0017703 Sechium edule HOM05D004204 ORTHO05D005069 1.2e-117 426.8 262 83.6
Haze_13468 Corylus avellana HOM05D004204 ORTHO05D005069 1.6e-117 426.4 262 85.5
CsaV3_6G037950 Cucumis sativus L. HOM05D004204 ORTHO05D005935 2.1e-117 426.0 262 83.2
Oeu032121.1 Olea europaea HOM05D004204 ORTHO05D005069 2.1e-117 426.0 262 84.4
CANSAT64G2098 Cannabis sativa HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.6
PGR042G0881 Punica granatum HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 85.5
TWI60G0387 Tripterygium wilfordii HOM05D004204 ORTHO05D005069 2.7e-117 425.6 262 86.3
Atru.chr6.3559 Acer truncatum HOM05D004204 ORTHO05D005069 3.5e-117 425.2 262 86.6
QL08p043409 Quercus lobata HOM05D004204 ORTHO05D005069 3.5e-117 425.2 261 85.1
MBI05_g35455_MAGBIO Magnolia biondii HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.4
THA.LOC104803084 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 6.0e-117 424.5 262 84.4
PGR042G1561 Punica granatum HOM05D004204 ORTHO05D005069 7.9e-117 424.1 262 85.1
Migut.J00093 Erythranthe guttata HOM05D004204 ORTHO05D005069 1.0e-116 423.7 262 85.1
unitig_578.g16445 Utricularia gibba HOM05D004204 ORTHO05D005069 1.3e-116 423.3 262 84.7
Rhsim09G0208200 Rhododendron simsii HOM05D004204 ORTHO05D005069 2.3e-116 422.5 262 84.4
Cc05_g09150 Coffea canephora HOM05D004204 ORTHO05D005069 3.9e-116 421.8 262 83.6
Manes.11G098900 Manihot esculenta HOM05D004204 ORTHO05D005069 5.1e-116 421.4 262 84.4
FAN09G4615 Fragaria x ananassa HOM05D004204 ORTHO05D005069 6.7e-116 421.0 262 84.4
Dinv32805 Davidia involucrata HOM05D004204 ORTHO05D005069 8.7e-116 420.6 262 84.4
Ah.08g218830 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 83.6
SalBow8G0221 Salvia bowleyana HOM05D004204 ORTHO05D005069 1.1e-115 420.2 262 85.5
FvH4_6g37711 Fragaria vesca HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.0
FAN02G0573 Fragaria x ananassa HOM05D004204 ORTHO05D005069 1.5e-115 419.9 262 84.0
arahy.Tifrunner.gnm1.ann1.ZZ9MYP Arachis hypogaea HOM05D004204 ORTHO05D005069 2.5e-115 419.1 263 84.0
arahy.Tifrunner.gnm1.ann1.T687E0 Arachis hypogaea HOM05D004204 ORTHO05D005069 7.4e-115 417.5 263 83.7
RcHm_v2.0_Chr2g0150801 Rosa chinensis HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 83.6
TAR627G1067 Trochodendron aralioides HOM05D004204 ORTHO05D005069 7.4e-115 417.5 262 84.0
Potri.001G331800 Populus trichocarpa HOM05D004204 ORTHO05D005069 1.3e-114 416.8 262 84.7
EL10Ac7g17969 Beta vulgaris HOM05D004204 ORTHO05D005069 2.1e-114 416.0 262 83.6
Cfa003191 Carpinus fangiana HOM05D004204 ORTHO05D005069 3.7e-114 415.2 262 84.0
arahy.Tifrunner.gnm1.ann1.MW62YC Arachis hypogaea HOM05D004204 ORTHO05D005069 4.8e-114 414.8 263 83.3
THA.LOC104824109 Tarenaya hassleriana HOM05D004204 ORTHO05D005069 4.8e-114 414.8 262 83.2
Sc17g0001890 Simmondsia chinensis HOM05D004204 ORTHO05D005069 6.2e-114 414.5 262 81.7
AUR62001174 Chenopodium quinoa HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 82.1
Haze_25816 Corylus avellana HOM05D004204 ORTHO05D005069 8.1e-114 414.1 262 83.6
DCAR_008869 Daucus carota HOM05D004204 ORTHO05D005069 1.1e-113 413.7 262 80.2
SGA_v2.0_scaffold75G25035 Striga asiatica HOM05D004204 ORTHO05D005069 1.1e-113 413.7 264 85.2
ATR1096G113 Amborella trichopoda HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 80.9
Aqoxy1G01036 Aquilegia oxysepala HOM05D004204 ORTHO05D005069 1.4e-113 413.3 262 82.4
CiPaw.04G158700 Carya illinoinensis HOM05D004204 ORTHO05D005069 9.0e-113 410.6 262 82.1
Ciclev10009240m.g Citrus clementina HOM05D004204 ORTHO05D005069 9.0e-113 410.6 259 83.8
Lalb_Chr01g0012081 Lupinus albus HOM05D004204 ORTHO05D005069 9.0e-113 410.6 263 81.7
Ah.02g131680 Amaranthus hybridus HOM05D004204 ORTHO05D005069 1.2e-112 410.2 262 82.1
PSO017G5144 Papaver somniferum HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 81.3
PSO478G2024 Papaver somniferum HOM05D004204 ORTHO05D005069 2.0e-112 409.5 262 81.3
TAR626G0791 Trochodendron aralioides HOM05D004204 ORTHO05D005069 5.8e-112 407.9 262 83.2
SGA_v2.0_scaffold49G18257 Striga asiatica HOM05D004204 ORTHO05D005069 7.6e-112 407.5 264 84.5
AT3G58730 Arabidopsis thaliana HOM05D004204 ORTHO05D005069 9.9e-112 407.1 262 81.3
HPP92_016375 Vanilla planifolia HOM05D004204 ORTHO05D005069 9.9e-112 407.1 264 81.4
AUR62022151 Chenopodium quinoa HOM05D004204 ORTHO05D005069 3.8e-111 405.2 255 82.0
BcaC07g40222 Brassica carinata HOM05D004204 ORTHO05D005069 4.9e-111 404.8 263 81.7
ECA240G3934 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.2e-110 402.1 262 80.2
Sabra16G0212800 Salix brachista HOM05D004204 ORTHO05D005069 3.0e-108 395.6 255 82.0
MD09G1156500 Malus domestica HOM05D004204 ORTHO05D005069 5.1e-108 394.8 247 84.6
MD17G1143000 Malus domestica HOM05D004204 ORTHO05D005069 5.1e-108 394.8 247 84.6
DCAR_017765 Daucus carota HOM05D004204 ORTHO05D005069 6.7e-108 394.4 262 79.8
CDE02G2648 Ceratophyllum demersum HOM05D004204 ORTHO05D001497 8.7e-108 394.0 262 79.8
Medtr4g007030 Medicago truncatula HOM05D004204 ORTHO05D005069 8.7e-108 394.0 263 79.1
HanXRQChr10g0291131 Helianthus annuus HOM05D004204 ORTHO05D005069 1.1e-107 393.7 262 78.6
BcaB02g07513 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
BcaC08g44940 Brassica carinata HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
C06p25680 Brassica napus HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
BolC6t37731H Brassica oleracea HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.4
Sp5g04120 Schrenkiella parvula HOM05D004204 ORTHO05D005069 1.5e-107 393.3 262 79.8
A07p24300 Brassica napus HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.4
BraA07t30073Z Brassica rapa HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.4
CARHR169110 Cardamine hirsuta HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.4
Thhalv10006181m.g Eutrema salsugineum HOM05D004204 ORTHO05D005069 1.9e-107 392.9 262 79.8
BcaB02g08238 Brassica carinata HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 79.4
HanXRQChr01g0018251 Helianthus annuus HOM05D004204 ORTHO05D005069 3.3e-107 392.1 262 78.6
A09p51280 Brassica napus HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.0
BraA09t40569Z Brassica rapa HOM05D004204 ORTHO05D005069 4.3e-107 391.7 262 79.0
BcaC02g10026 Brassica carinata HOM05D004204 ORTHO05D005069 9.6e-107 390.6 262 79.0
arahy.Tifrunner.gnm1.ann1.2FMA0R Arachis hypogaea HOM05D004204 ORTHO05D005069 1.3e-106 390.2 246 84.1
BolC4t24946H Brassica oleracea HOM05D004204 ORTHO05D005069 1.3e-106 390.2 262 79.0
C04p33790 Brassica napus HOM05D004204 ORTHO05D005069 3.7e-106 388.7 262 78.6
Glyma.08G218500 Glycine max HOM05D004204 ORTHO05D005069 3.7e-106 388.7 263 80.2
Carub.0005s2552 Capsella rubella HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 79.0
Glyma.07G023400 Glycine max HOM05D004204 ORTHO05D005069 4.8e-106 388.3 263 80.2
Lsat_1_v5_gn_1_65961 Lactuca sativa HOM05D004204 ORTHO05D005069 4.8e-106 388.3 262 79.0
AL5G40500 Arabidopsis lyrata HOM05D004204 ORTHO05D005069 1.1e-105 387.1 262 78.6
BcaC07g40292 Brassica carinata HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 78.7
C08p34060 Brassica napus HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 78.7
BolC8t51004H Brassica oleracea HOM05D004204 ORTHO05D005069 1.1e-105 387.1 263 78.7
Aa31LG10G13340 Aethionema arabicum HOM05D004204 ORTHO05D005069 2.4e-105 386.0 262 77.5
Lj3g0014023 Lotus japonicus HOM05D004204 ORTHO05D005069 1.0e-103 380.6 263 77.9
Os04g0643100 Oryza sativa ssp. japonica HOM05D004204 ORTHO05D005069 3.8e-103 378.6 270 74.8
Phvul.010G161000 Phaseolus vulgaris HOM05D004204 ORTHO05D005069 2.5e-102 375.9 263 78.7
ECA246G4647 Erigeron canadensis HOM05D004204 ORTHO05D005069 3.2e-102 375.6 264 78.0
VMungo0331G1952 Vigna mungo HOM05D004204 ORTHO05D005069 4.2e-102 375.2 263 78.7
Zm00001eb068780 Zea mays HOM05D004204 ORTHO05D005069 6.0e-101 371.3 270 73.0
HanXRQChr17g0544781 Helianthus annuus HOM05D004204 ORTHO05D005069 1.8e-100 369.8 264 75.8
Hma1.2p1_0178F.1_g078220 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 2.5e-99 365.9 262 75.6
Ca_20545_v3 Cicer arietinum L. HOM05D004204 ORTHO05D005069 1.3e-98 363.6 248 77.4
Lsat_1_v5_gn_3_51340 Lactuca sativa HOM05D004204 ORTHO05D005069 1.6e-98 363.2 218 88.1
Lj9A643T35 Lonicera japonica HOM05D004204 ORTHO05D005069 6.9e-97 357.8 262 75.2
HPP92_004259 Vanilla planifolia HOM05D004204 ORTHO05D005069 4.5e-96 355.1 249 74.3
Pp3c6_9410 Physcomitrium patens HOM05D004204 ORTHO05D005069 1.9e-94 349.7 236 76.3
SEGI_15623 Sequoiadendron giganteum HOM05D004204 ORTHO05D005069 3.2e-94 349.0 210 86.2
TPR.G23089 Trifolium pratense HOM05D004204 ORTHO05D005069 1.2e-93 347.1 241 78.0
HPP92_004237 Vanilla planifolia HOM05D004204 ORTHO05D005069 2.7e-93 345.9 234 76.9
Mapoly0105s0055 Marchantia polymorpha HOM05D004204 ORTHO05D005069 6.1e-93 344.7 219 80.4
SMO228G0174 Selaginella moellendorffii HOM05D004204 ORTHO05D005069 6.1e-93 344.7 223 78.0
Pp3c27_320 Physcomitrium patens HOM05D004204 ORTHO05D005069 3.0e-92 342.4 263 69.2
vmacro10147 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.0e-91 339.7 214 83.6
vmacro03162 Vaccinium macrocarpon HOM05D004204 ORTHO05D005069 2.2e-90 336.3 262 70.2
CBR_g48799 Chara braunii HOM05D004204 ORTHO05D005069 3.1e-89 332.4 219 79.0
CAN.G526.4 Capsicum annuum HOM05D004204 ORTHO05D005069 3.2e-86 322.4 253 73.9
Zm00001eb414980 Zea mays HOM05D004204 ORTHO05D005069 2.8e-82 309.3 267 62.2
AagrBONN_evm.TU.Sc2ySwM_117.1669 Anthoceros agrestis HOM05D004204 ORTHO05D005069 3.5e-80 302.4 243 65.8
Pp3c27_340 Physcomitrium patens HOM05D004204 ORTHO05D005069 2.2e-79 299.7 231 65.4
CSS0036612 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.7e-77 292.7 250 67.6
Actinidia12827 Actinidia chinensis HOM05D004204 ORTHO05D005069 5.7e-75 285.0 247 65.2
Cre09.g405050 Chlamydomonas reinhardtii HOM05D004204 ORTHO05D005069 2.4e-73 279.6 208 68.8
Psat7g260080 Pisum sativum HOM05D004204 ORTHO05D005069 4.5e-72 275.4 204 72.5
BraA04t15968Z Brassica rapa HOM05D004204 ORTHO05D005069 9.4e-70 267.7 263 60.1
Rhsim13G0091500 Rhododendron simsii HOM05D003786 ORTHO05D004375 2.7e-69 266.2 262 62.2
PRCOL_00004709 Prasinoderma coloniale HOM05D004204 ORTHO05D005069 5.2e-68 261.9 274 55.5
MCO02G145 Micromonas commoda HOM05D004204 ORTHO05D005069 4.8e-66 255.4 211 64.5
CSS0013944 Camellia sinensis var. sinensis HOM05D004204 ORTHO05D005069 2.6e-59 233.0 235 60.9
Haze_27505 Corylus avellana HOM05D004204 ORTHO05D005069 7.7e-56 221.5 244 50.8
CDE06G2512 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.5e-54 214.5 130 82.3
Nn3g21015 Nelumbo nucifera HOM05D004204 ORTHO05D005069 4.4e-51 205.7 120 87.5
Cfa023614 Carpinus fangiana HOM05D004204 ORTHO05D005069 5.4e-49 198.7 247 48.6
A04p02390 Brassica napus HOM05D004204 ORTHO05D005069 7.8e-48 194.9 138 76.1
Oeu014265.1 Olea europaea HOM05D004204 ORTHO05D005069 1.9e-46 190.3 179 60.3
Actinidia07106 Actinidia chinensis HOM05D004204 ORTHO05D005069 1.3e-42 177.6 118 78.8
CDE06G0458 Ceratophyllum demersum HOM05D004204 ORTHO05D005069 9.8e-35 151.4 141 62.4
PGSC0003DMG400031396 Solanum tuberosum HOM05D004204 ORTHO05D005069 2.2e-34 150.2 96 81.2
Hma1.2p1_3358F.1_g335580 Hydrangea macrophylla HOM05D004204 ORTHO05D005069 1.4e-33 147.5 191 47.6
RcHm_v2.0_Chr2g0150691 Rosa chinensis HOM05D004204 ORTHO05D005069 3.5e-24 116.3 69 87.0


User provided reference genes

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