Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G129.31 Capsicum annuum HOM05D006680 ORTHO05D008206 8.4e-58 226.9 120 100.0
Sopen01g028370 Solanum pennellii HOM05D006680 ORTHO05D008206 1.5e-54 216.1 120 92.5
PGSC0003DMG400011317 Solanum tuberosum HOM05D006680 ORTHO05D008206 5.7e-54 214.2 120 90.8
Nitab4.5_0002761g0070 Nicotiana tabacum HOM05D006680 ORTHO05D008206 2.4e-52 208.8 121 91.7
Peaxi162Scf00246g00103 Petunia axillaris HOM05D006680 ORTHO05D008206 4.5e-51 204.5 117 90.6
Nitab4.5_0003466g0010 Nicotiana tabacum HOM05D006680 ORTHO05D008206 3.2e-49 198.4 120 83.3
Peaxi162Scf00646g00027 Petunia axillaris HOM05D006680 ORTHO05D008206 2.1e-48 195.7 120 82.5
Cc03_g01760 Coffea canephora HOM05D006680 ORTHO05D008206 1.5e-46 189.5 120 80.0
Solyc12g099500.2 Solanum lycopersicum HOM05D006680 ORTHO05D008206 2.0e-46 189.1 116 80.2
Sopen12g034170 Solanum pennellii HOM05D006680 ORTHO05D008206 2.0e-46 189.1 116 80.2
Migut.G00148 Erythranthe guttata HOM05D006680 ORTHO05D008206 5.7e-46 187.6 120 79.2
PGSC0003DMG400004705 Solanum tuberosum HOM05D006680 ORTHO05D008206 1.3e-45 186.4 117 81.2
Ciclev10006049m.g Citrus clementina HOM05D006680 ORTHO05D008206 2.8e-45 185.3 121 81.0
Dinv29759 Davidia involucrata HOM05D006680 ORTHO05D008206 1.8e-44 182.6 117 78.6
Cpa.g.sc16.184 Carica papaya HOM05D006680 ORTHO05D008206 3.1e-44 181.8 124 79.0
Oeu001107.1 Olea europaea HOM05D006680 ORTHO05D008206 4.1e-44 181.4 120 75.8
Oeu063359.1 Olea europaea HOM05D006680 ORTHO05D008206 4.1e-44 181.4 120 76.7
Manes.15G011600 Manihot esculenta HOM05D006680 ORTHO05D008206 5.3e-44 181.0 123 78.0
SGA_v2.0_scaffold67G22622 Striga asiatica HOM05D006680 ORTHO05D008206 9.1e-44 180.3 120 74.2
Atru.chr4.2870 Acer truncatum HOM05D006680 ORTHO05D008206 1.5e-43 179.5 122 77.9
ClCG00G005610 Citrullus lanatus HOM05D006680 ORTHO05D008206 2.6e-43 178.7 120 75.8
QL06p009590 Quercus lobata HOM05D006680 ORTHO05D008206 4.5e-43 177.9 119 78.2
Sabra10G0008200 Salix brachista HOM05D006680 ORTHO05D008206 5.9e-43 177.6 116 77.6
TWI09G0327 Tripterygium wilfordii HOM05D006680 ORTHO05D008206 1.0e-42 176.8 115 77.4
MD13G1167200 Malus domestica HOM05D006680 ORTHO05D008206 2.2e-42 175.6 122 73.8
Thecc.04G286300 Theobroma cacao HOM05D006680 ORTHO05D008206 6.5e-42 174.1 117 77.8
BraA05t22848Z Brassica rapa HOM05D006680 ORTHO05D008206 8.5e-42 173.7 111 82.9
Gohir.A10G164900 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-41 173.3 118 77.1
Gohir.D10G171100 Gossypium hirsutum HOM05D006680 ORTHO05D008206 1.1e-41 173.3 118 77.1
Gorai.011G191100 Gossypium raimondii HOM05D006680 ORTHO05D008206 1.1e-41 173.3 118 77.1
Manes.03G196700 Manihot esculenta HOM05D006680 ORTHO05D008206 1.4e-41 172.9 118 75.4
Potri.010G013100 Populus trichocarpa HOM05D006680 ORTHO05D008206 1.9e-41 172.6 116 75.0
CiPaw.01G147500 Carya illinoinensis HOM05D006680 ORTHO05D008206 2.5e-41 172.2 120 75.0
Potri.008G221000 Populus trichocarpa HOM05D006680 ORTHO05D008206 3.2e-41 171.8 123 74.0
MSTRG.3906 Avicennia marina HOM05D006680 ORTHO05D008206 5.5e-41 171.0 120 70.8
Lsat_1_v5_gn_6_95660 Lactuca sativa HOM05D006680 ORTHO05D008206 7.2e-41 170.6 117 70.9
A05p41250 Brassica napus HOM05D006680 ORTHO05D008206 1.2e-40 169.9 111 82.0
BcaC05g29822 Brassica carinata HOM05D006680 ORTHO05D008206 1.6e-40 169.5 112 82.1
BolC5t34701H Brassica oleracea HOM05D006680 ORTHO05D008206 1.6e-40 169.5 112 82.1
CAN.G484.39 Capsicum annuum HOM05D006680 ORTHO05D008206 2.1e-40 169.1 118 74.6
A03p34950 Brassica napus HOM05D006680 ORTHO05D008206 2.7e-40 168.7 111 79.3
C03p42530 Brassica napus HOM05D006680 ORTHO05D008206 2.7e-40 168.7 111 79.3
BolC3t16523H Brassica oleracea HOM05D006680 ORTHO05D008206 2.7e-40 168.7 111 79.3
BraA03t12675Z Brassica rapa HOM05D006680 ORTHO05D008206 2.7e-40 168.7 111 79.3
Prupe.1G134500 Prunus persica HOM05D006680 ORTHO05D008206 4.7e-40 167.9 118 74.6
DCAR_027070 Daucus carota HOM05D006680 ORTHO05D008206 6.1e-40 167.5 116 71.6
RcHm_v2.0_Chr4g0422811 Rosa chinensis HOM05D006680 ORTHO05D008206 6.1e-40 167.5 118 75.4
THA.LOC104818922 Tarenaya hassleriana HOM05D006680 ORTHO05D008206 6.1e-40 167.5 122 73.8
CSS0014864 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 1.0e-39 166.8 118 72.9
Lalb_Chr07g0177791 Lupinus albus HOM05D006680 ORTHO05D008206 1.0e-39 166.8 116 76.7
Lalb_Chr13g0303561 Lupinus albus HOM05D006680 ORTHO05D008206 1.0e-39 166.8 116 76.7
CiPaw.02G082300 Carya illinoinensis HOM05D006680 ORTHO05D008206 1.8e-39 166.0 120 70.8
CSS0010580 Camellia sinensis var. sinensis HOM05D006680 ORTHO05D008206 3.0e-39 165.2 118 72.9
VMungo1215G2846 Vigna mungo HOM05D006680 ORTHO05D008206 3.9e-39 164.9 108 78.7
Gohir.A09G238300 Gossypium hirsutum HOM05D006680 ORTHO05D008206 5.1e-39 164.5 118 72.9
Duzib151G0306 Durio zibethinus HOM05D006680 ORTHO05D008206 6.7e-39 164.1 119 76.5
FAN07G2082 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.7e-39 164.1 118 72.9
FAN12G3601 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.7e-39 164.1 118 72.9
FAN17G1034 Fragaria x ananassa HOM05D006680 ORTHO05D008206 6.7e-39 164.1 118 72.9
Gohir.D09G239200 Gossypium hirsutum HOM05D006680 ORTHO05D008206 8.8e-39 163.7 118 72.9
Gorai.006G261900 Gossypium raimondii HOM05D006680 ORTHO05D008206 8.8e-39 163.7 118 72.9
Hma1.2p1_1185F.1_g265000 Hydrangea macrophylla HOM05D006680 ORTHO05D008206 1.1e-38 163.3 117 74.4
FvH4_4g18340 Fragaria vesca HOM05D006680 ORTHO05D008206 1.5e-38 162.9 118 72.0
Duzib212G0294 Durio zibethinus HOM05D006680 ORTHO05D008206 2.6e-38 162.2 119 74.8
FAN12G3976 Fragaria x ananassa HOM05D006680 ORTHO05D008206 3.3e-38 161.8 117 72.6
ECA240G4018 Erigeron canadensis HOM05D006680 ORTHO05D008206 9.7e-38 160.2 111 70.3
Nn4g25792 Nelumbo nucifera HOM05D006680 ORTHO05D008206 1.7e-37 159.5 117 71.8
Ah.08g214570 Amaranthus hybridus HOM05D006680 ORTHO05D008206 2.2e-37 159.1 121 71.9
Ca_21488_v3 Cicer arietinum L. HOM05D006680 ORTHO05D008206 2.2e-37 159.1 119 73.9
TAR370G0002 Trochodendron aralioides HOM05D006680 ORTHO05D008206 4.8e-37 157.9 116 74.1
HanXRQChr13g0419971 Helianthus annuus HOM05D006680 ORTHO05D008206 1.1e-36 156.8 117 67.5
Sed0015603 Sechium edule HOM05D006680 ORTHO05D008206 1.4e-36 156.4 120 67.5
Carub.0003s0642 Capsella rubella HOM05D006680 ORTHO05D008206 2.4e-36 155.6 98 82.7
CARHR081510 Cardamine hirsuta HOM05D006680 ORTHO05D008206 2.4e-36 155.6 99 81.8
AUR62040379 Chenopodium quinoa HOM05D006680 ORTHO05D008206 2.4e-36 155.6 121 69.4
Sc19g0005290 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.4e-36 155.6 121 68.6
Sc19g0005370 Simmondsia chinensis HOM05D006680 ORTHO05D008206 2.4e-36 155.6 121 68.6
DCAR_002469 Daucus carota HOM05D006680 ORTHO05D008206 3.1e-36 155.2 118 63.6
AT3G06890 Arabidopsis thaliana HOM05D006680 ORTHO05D008206 1.2e-35 153.3 99 81.8
AL3G18020 Arabidopsis lyrata HOM05D006680 ORTHO05D008206 1.5e-35 152.9 99 81.8
Glyma.07G246700 Glycine max HOM05D006680 ORTHO05D008206 3.5e-35 151.8 113 69.0
Medtr4g120020 Medicago truncatula HOM05D006680 ORTHO05D008206 3.5e-35 151.8 108 73.1
Thhalv10021931m.g Eutrema salsugineum HOM05D006680 ORTHO05D008206 4.5e-35 151.4 109 73.4
Aqoxy2G02951 Aquilegia oxysepala HOM05D006680 ORTHO05D008206 5.9e-35 151.0 121 66.9
Nn3g21479 Nelumbo nucifera HOM05D006680 ORTHO05D008206 5.9e-35 151.0 104 76.0
Lj4g0016566 Lotus japonicus HOM05D006680 ORTHO05D008206 2.9e-34 148.7 91 83.5
Sp3g05850 Schrenkiella parvula HOM05D006680 ORTHO05D008206 3.8e-34 148.3 97 79.4
MBI19_g25353_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 1.1e-33 146.7 118 66.1
CANSAT78G1139 Cannabis sativa HOM05D006680 ORTHO05D008206 1.9e-33 146.0 96 77.1
Psat4g026840 Pisum sativum HOM05D006680 ORTHO05D008206 8.0e-32 140.6 92 78.3
PSO832G1781 Papaver somniferum HOM05D006680 ORTHO05D008206 1.0e-31 140.2 121 62.0
TPR.G3164 Trifolium pratense HOM05D006680 ORTHO05D008206 1.4e-31 139.8 91 80.2
PSO210G6323 Papaver somniferum HOM05D006680 ORTHO05D008206 1.8e-31 139.4 121 63.6
PGR004G0310 Punica granatum HOM05D006680 ORTHO05D008206 1.5e-30 136.3 119 63.0
DCAR_030521 Daucus carota HOM05D006680 ORTHO05D008206 2.0e-30 136.0 118 57.6
MBI18_g06870_MAGBIO Magnolia biondii HOM05D006680 ORTHO05D008206 9.7e-30 133.7 117 64.1
Sabra10G0008300 Salix brachista HOM05D006680 ORTHO05D008206 1.3e-29 133.3 115 62.6
PGR031G3343 Punica granatum HOM05D006680 ORTHO05D008206 2.2e-29 132.5 116 57.8
Phvul.003G097003 Phaseolus vulgaris HOM05D006680 ORTHO05D008206 3.7e-29 131.7 92 72.8
HanXRQChr03g0089341 Helianthus annuus HOM05D006680 ORTHO05D008206 1.8e-28 129.4 120 57.5
PSO170G5007 Papaver somniferum HOM05D006680 ORTHO05D008206 9.1e-28 127.1 96 69.8
PSO017G4993 Papaver somniferum HOM05D006680 ORTHO05D008206 2.0e-27 125.9 96 68.8
MD16G1168200 Malus domestica HOM05D006680 ORTHO05D008206 3.8e-26 121.7 125 59.2
unitig_32.g11869 Utricularia gibba HOM05D006680 ORTHO05D008206 1.9e-25 119.4 120 54.2
Rhsim04G0223700 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.5e-25 119.0 96 63.5
Rhsim09G0007300 Rhododendron simsii HOM05D006680 ORTHO05D008206 2.5e-25 119.0 96 63.5
ATR0796G044 Amborella trichopoda HOM05D006680 ORTHO05D008206 9.4e-25 117.1 113 54.9
HPP92_000110 Vanilla planifolia HOM05D006680 ORTHO05D008206 8.0e-24 114.0 112 56.2
Os03g0343800 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.0e-23 113.6 107 58.9
Thecc.09G272700 Theobroma cacao HOM05D006680 ORTHO05D008206 3.3e-22 108.6 81 74.1
Thecc.05G268700 Theobroma cacao HOM05D006680 ORTHO05D008206 9.7e-22 107.1 87 70.1
Zm00001eb124100 Zea mays HOM05D006680 ORTHO05D008206 1.3e-21 106.7 116 52.6
Zm00001eb016470 Zea mays HOM05D006680 ORTHO05D008206 6.3e-21 104.4 111 53.2
Eucgr.H03932 Eucalyptus grandis HOM05D006680 ORTHO05D008206 7.7e-19 97.4 125 50.4
Zm00001eb394930 Zea mays HOM05D006680 ORTHO05D008206 2.9e-18 95.5 93 57.0
TAR633G0386 Trochodendron aralioides HOM05D006680 ORTHO05D008206 5.5e-17 91.3 123 48.0
Os07g0673801 Oryza sativa ssp. japonica HOM05D006680 ORTHO05D008206 1.4e-12 76.6 110 44.5
SalBow5G0837 Salvia bowleyana HOM05D006680 ORTHO05D008206 2.7e-11 72.4 117 36.8
MELO3C006671.2 Cucumis melo HOM05D006680 ORTHO05D008206 6.6e-10 67.8 52 65.4
Dinv44367 Davidia involucrata HOM05D010970 ORTHO05D012912 2.0e-06 56.2 33 81.8


User provided reference genes

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