Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 2.2e-82 308.9 155 100.0
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.5e-70 268.9 154 85.7
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 7.3e-70 267.3 155 85.8
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 9.5e-70 266.9 154 85.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 3.6e-69 265.0 154 85.1
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.4e-68 263.1 154 84.4
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 6.0e-56 221.1 134 81.3
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 2.0e-43 179.5 137 67.9
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.6e-43 179.1 133 69.2
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 1.7e-42 176.4 133 68.4
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 2.1e-37 159.5 131 64.1
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 1.2e-35 153.7 133 60.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 6.4e-34 147.9 134 58.2
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 3.2e-33 145.6 146 52.7
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 2.7e-32 142.5 144 54.9
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 3.0e-31 139.0 127 63.0
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 3.0e-31 139.0 154 47.4
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.9e-31 138.7 143 56.6
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 8.7e-31 137.5 149 50.3
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 1.9e-30 136.3 153 47.1
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 4.3e-30 135.2 152 48.0
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 5.6e-30 134.8 153 49.0
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 2.8e-29 132.5 140 50.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.1e-28 130.6 152 50.0
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 1.1e-28 130.6 138 49.3
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 1.8e-28 129.8 136 54.4
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 3.1e-28 129.0 152 50.7
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 4.0e-28 128.6 153 50.3
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 5.3e-28 128.3 155 49.7
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 6.9e-28 127.9 123 56.1
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 1.2e-27 127.1 146 48.6
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.5e-27 126.7 129 58.9
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 2.0e-27 126.3 137 51.1
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 3.4e-27 125.6 141 47.5
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 5.8e-27 124.8 156 45.5
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 7.6e-27 124.4 152 46.1
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 7.6e-27 124.4 146 46.6
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 1.0e-26 124.0 140 47.1
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 1.0e-26 124.0 153 45.1
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 1.3e-26 123.6 133 51.1
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.3e-26 123.6 143 51.0
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.7e-26 123.2 138 47.8
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 2.2e-26 122.9 136 50.0
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 2.9e-26 122.5 145 47.6
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.9e-26 122.5 145 47.6
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 4.9e-26 121.7 132 52.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 6.5e-26 121.3 152 44.1
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.9e-25 119.8 137 49.6
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 3.2e-25 119.0 121 54.5
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 4.2e-25 118.6 155 43.9
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 7.1e-25 117.9 146 45.9
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 7.1e-25 117.9 139 49.6
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 7.1e-25 117.9 143 48.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 1.2e-24 117.1 124 50.8
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.2e-24 117.1 153 45.8
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 1.6e-24 116.7 148 44.6
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.6e-24 116.7 152 46.7
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 2.1e-24 116.3 149 43.0
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 2.1e-24 116.3 146 46.6
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 2.1e-24 116.3 137 48.9
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 3.5e-24 115.5 122 52.5
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 6.0e-24 114.8 151 45.7
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 1.0e-23 114.0 147 45.6
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 1.0e-23 114.0 151 44.4
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.0e-23 114.0 146 45.2
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 1.0e-23 114.0 124 49.2
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 1.0e-23 114.0 124 49.2
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.0e-23 114.0 133 48.9
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 1.0e-23 114.0 147 46.3
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 1.3e-23 113.6 158 41.8
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 1.8e-23 113.2 136 47.1
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 1.8e-23 113.2 125 47.2
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 1.8e-23 113.2 158 46.2
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 1.8e-23 113.2 142 47.2
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 2.3e-23 112.8 110 52.7
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.3e-23 112.8 132 51.5
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 3.0e-23 112.5 153 44.4
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 3.9e-23 112.1 144 47.9
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.9e-23 112.1 152 44.1
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.9e-23 112.1 154 45.5
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 5.1e-23 111.7 148 41.2
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 8.7e-23 110.9 153 40.5
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 8.7e-23 110.9 141 46.1
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 1.5e-22 110.2 124 53.2
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-22 109.4 133 47.4
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 2.5e-22 109.4 133 48.1
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 4.3e-22 108.6 149 41.6
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.1e-21 106.3 151 45.7
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 2.8e-21 105.9 152 44.1
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 2.8e-21 105.9 101 56.4
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.2e-21 104.8 146 44.5
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.2e-21 104.8 146 44.5
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 8.2e-21 104.4 118 46.6
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 8.2e-21 104.4 140 44.3
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.4e-20 102.8 142 45.1
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 3.1e-20 102.4 141 46.8
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 4.0e-20 102.1 140 43.6
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 4.0e-20 102.1 129 42.6
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 5.3e-20 101.7 123 50.4
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 9.0e-20 100.9 157 38.9
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 2.0e-19 99.8 145 41.4
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 3.4e-19 99.0 134 41.0
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 4.5e-19 98.6 143 45.5
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 5.8e-19 98.2 143 45.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 7.6e-19 97.8 140 44.3
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 7.6e-19 97.8 140 44.3
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 1.0e-18 97.4 143 44.8
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 1.0e-18 97.4 143 44.8
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.3e-18 97.1 143 46.2
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 2.2e-18 96.3 140 42.9
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.9e-18 95.9 148 43.2
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 2.9e-18 95.9 134 44.8
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 5.0e-18 95.1 141 42.6
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 6.5e-18 94.7 146 40.4
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 8.4e-18 94.4 142 40.8
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 8.4e-18 94.4 143 42.7
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.9e-17 93.2 138 42.0
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 7.1e-17 91.3 132 43.2
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 7.1e-17 91.3 132 43.2
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 7.1e-17 91.3 142 40.1
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 9.3e-17 90.9 142 40.8
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 1.2e-16 90.5 141 41.8
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.1e-16 89.7 139 39.6
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-16 89.7 121 43.0
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.1e-16 89.7 139 39.6
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.1e-16 89.7 139 39.6
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 2.1e-16 89.7 119 39.5
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 2.7e-16 89.4 125 41.6
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 3.9e-15 85.5 138 38.4
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 8.7e-15 84.3 102 45.1
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 2.2e-13 79.7 93 53.8
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 1.4e-12 77.0 138 37.0
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 1.2e-11 73.9 57 63.2
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 1.3e-10 70.5 129 35.7
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 1.7e-10 70.1 85 48.2
Migut.E00712 Erythranthe guttata HOM05D005336 ORTHO05D006511 2.2e-10 69.7 99 46.5
SEGI_39402 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 5.0e-10 68.6 137 36.5
SEGI_39042 Sequoiadendron giganteum HOM05D006278 ORTHO05D007526 3.2e-09 65.9 152 34.9
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 4.2e-09 65.5 59 54.2
SEGI_10606 Sequoiadendron giganteum HOM05D005336 ORTHO05D006511 7.2e-09 64.7 134 33.6
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.2e-08 63.9 110 35.5
SEGI_05135 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 1.2e-08 63.9 122 37.7
Os04g0105200 Oryza sativa ssp. japonica HOM05D005336 ORTHO05D006511 2.1e-08 63.2 121 33.1
SEGI_20460 Sequoiadendron giganteum HOM05D004242 ORTHO05D004349 6.1e-08 61.6 140 33.6
Zm00001eb089560 Zea mays HOM05D005336 ORTHO05D006511 6.1e-08 61.6 130 31.5
Zm00001eb418860 Zea mays HOM05D005336 ORTHO05D006511 1.4e-07 60.5 102 30.4
VMungo1309G1357 Vigna mungo HOM05D006278 ORTHO05D007526 1.5e-06 57.0 89 41.6
Zm00001eb309990 Zea mays HOM05D065992 ORTHO05D037126 1.5e-06 57.0 101 40.6
Glyma.04G031100 Glycine max HOM05D006278 ORTHO05D007526 2.0e-06 56.6 88 39.8
Phvul.009G058700 Phaseolus vulgaris HOM05D006278 ORTHO05D007526 4.3e-06 55.5 88 40.9
Glyma.06G031201 Glycine max HOM05D006278 ORTHO05D007526 7.4e-06 54.7 75 44.0
Gohir.D02G095000 Gossypium hirsutum HOM05D000342 ORTHO05D000217 7.4e-06 54.7 103 40.8
HPP92_007373 Vanilla planifolia HOM05D005336 ORTHO05D006511 9.7e-06 54.3 59 45.8


User provided reference genes

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