Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 7.8e-311 1069.7 568 100.0
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 1.5e-253 879.4 575 84.0
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 5.6e-253 877.5 575 84.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 1.3e-252 876.3 575 83.8
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 4.2e-248 861.3 563 82.1
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 5.5e-248 860.9 571 82.0
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.8e-246 855.9 565 81.8
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 1.6e-210 736.5 562 69.6
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 1.9e-208 729.6 558 70.4
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.2e-204 716.1 558 69.0
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 5.3e-203 711.4 561 69.5
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.2e-201 706.1 562 69.2
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 2.7e-199 699.1 568 68.8
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 2.3e-198 696.0 569 66.8
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 4.0e-198 695.3 572 64.5
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 8.8e-198 694.1 557 67.7
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 9.8e-197 690.6 565 66.7
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.7e-196 689.9 565 65.5
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 7.0e-195 684.5 561 66.3
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 7.7e-194 681.0 565 65.1
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 1.3e-193 680.2 566 65.4
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.3e-193 680.2 562 65.8
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.8e-193 678.7 560 65.2
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 8.6e-193 677.6 570 64.0
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 3.6e-191 672.2 564 64.4
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 8.0e-191 671.0 572 63.8
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 6.8e-190 667.9 671 56.9
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 3.4e-189 665.6 577 63.6
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 6.3e-188 661.4 555 67.2
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.4e-187 660.2 556 63.3
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 3.1e-187 659.1 563 63.6
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 2.7e-186 656.0 568 63.2
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 3.5e-186 655.6 555 62.7
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 3.5e-186 655.6 563 63.2
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 1.0e-185 654.1 552 64.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.3e-185 652.9 571 63.0
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 2.3e-185 652.9 559 63.7
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 3.8e-185 652.1 565 63.4
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 2.5e-184 649.4 555 63.8
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 7.3e-184 647.9 557 63.0
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 2.8e-183 646.0 555 63.6
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.0e-182 642.1 579 61.0
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 8.9e-182 641.0 563 62.0
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 8.9e-182 641.0 572 60.5
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.6e-181 639.4 579 61.1
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 4.4e-181 638.6 579 60.6
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 4.4e-181 638.6 568 61.6
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-180 637.1 568 62.3
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 2.2e-180 636.3 566 62.2
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 4.9e-180 635.2 572 61.2
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 1.6e-178 630.2 563 61.3
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 1.1e-176 624.0 557 61.6
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.9e-176 623.2 565 60.9
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 3.3e-176 622.5 572 61.5
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 7.3e-176 621.3 569 60.5
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 9.5e-176 620.9 554 61.0
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 2.8e-175 619.4 559 60.8
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 4.0e-174 615.5 561 59.7
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 4.0e-174 615.5 560 61.8
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 8.9e-174 614.4 563 61.5
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 8.9e-174 614.4 562 61.6
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 9.8e-173 610.9 563 60.0
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 3.7e-172 609.0 571 59.4
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.4e-171 607.1 566 59.2
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.4e-171 607.1 567 60.0
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 1.9e-171 606.7 560 61.6
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 1.9e-171 606.7 555 61.3
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.2e-171 605.9 563 58.8
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 2.7e-170 602.8 561 60.2
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 2.7e-170 602.8 561 58.8
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 7.8e-170 601.3 563 60.2
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.7e-169 600.1 574 59.1
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 6.6e-169 598.2 559 58.3
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 1.9e-168 596.7 558 59.0
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 3.3e-168 595.9 566 60.1
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 4.0e-166 589.0 578 57.3
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 2.0e-165 586.6 560 59.1
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 2.6e-165 586.3 557 57.1
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.6e-165 586.3 578 57.1
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 2.6e-165 586.3 569 59.9
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 1.4e-163 580.5 554 56.7
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 7.8e-162 574.7 579 56.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.0e-161 572.8 579 56.3
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 9.5e-160 567.8 555 56.9
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 8.7e-153 544.7 568 53.3
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 2.1e-151 540.0 582 52.7
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 6.2e-151 538.5 563 52.9
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 6.2e-151 538.5 565 53.1
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 1.1e-150 537.7 570 52.8
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 1.8e-150 537.0 563 54.7
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 2.4e-150 536.6 423 70.0
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.4e-149 532.7 563 52.9
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 9.9e-149 531.2 577 52.5
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 9.9e-149 531.2 563 52.8
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.3e-148 530.8 550 54.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 3.5e-146 522.7 560 52.1
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.5e-146 522.7 567 51.9
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.3e-145 520.0 573 51.3
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 3.9e-145 519.2 572 52.1
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 6.4e-140 501.9 450 59.6
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 6.4e-140 501.9 566 50.4
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 1.3e-137 494.2 579 49.9
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 3.2e-131 473.0 419 62.3
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 1.0e-129 468.0 555 50.6
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 9.6e-128 461.5 375 66.7
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 2.1e-127 460.3 564 49.1
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 2.8e-127 459.9 555 49.5
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.2e-127 458.8 531 52.0
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 9.0e-126 454.9 563 46.5
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.8e-124 449.5 501 53.3
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 2.5e-123 446.8 432 58.3
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 1.8e-118 430.6 564 46.3
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.5e-117 427.6 299 73.6
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 7.2e-115 418.7 560 44.8
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 1.5e-112 411.0 281 74.4
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 5.7e-112 409.1 567 45.3
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 1.3e-108 397.9 563 42.1
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 7.7e-93 345.5 385 50.4
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-89 333.2 467 46.5
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.4e-81 308.1 311 55.3
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 1.5e-80 304.7 466 42.9
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.0e-77 294.3 348 52.3
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 2.5e-75 287.3 597 38.5
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.6e-74 284.6 158 94.9
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-66 258.5 225 62.7
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 8.9e-65 252.3 178 70.2
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-61 241.1 487 38.4
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.3e-60 238.4 239 57.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 7.3e-59 232.6 416 37.3
Eucgr.C04399 Eucalyptus grandis HOM05D004469 ORTHO05D005429 6.6e-44 183.0 139 69.1
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-42 178.7 136 66.9
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 1.6e-42 178.3 139 66.9
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-41 174.5 326 39.9
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 3.2e-38 164.1 147 57.8
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 9.3e-38 162.5 116 70.7
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 1.0e-36 159.1 116 69.0
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 5.6e-27 126.7 519 28.5
RcHm_v2.0_Chr5g0072051 Rosa chinensis HOM05D004469 ORTHO05D005429 9.0e-25 119.4 288 34.0
CBR_g42181 Chara braunii HOM05D000019 ORTHO05D000048 2.2e-23 114.8 175 44.0
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.4e-22 111.3 86 67.4
RcHm_v2.0_Chr5g0016131 Rosa chinensis HOM05D004469 ORTHO05D005429 2.7e-21 107.8 88 64.8
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.3e-18 99.0 105 47.6
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 4.5e-16 90.5 56 73.2
HanXRQChr04g0107841 Helianthus annuus HOM05D004469 ORTHO05D005429 1.7e-15 88.6 106 50.0
RcHm_v2.0_Chr5g0016151 Rosa chinensis HOM05D004469 ORTHO05D005429 6.2e-10 70.1 169 35.5
RcHm_v2.0_Chr7g0241381 Rosa chinensis HOM05D004469 ORTHO05D005429 8.2e-10 69.7 168 38.7
RcHm_v2.0_Chr7g0241361 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-09 68.9 43 72.1
RcHm_v2.0_Chr5g0069491 Rosa chinensis HOM05D004469 ORTHO05D005429 6.9e-09 66.6 48 66.7
RcHm_v2.0_Chr5g0029761 Rosa chinensis HOM05D004469 ORTHO05D005429 3.4e-08 64.3 36 80.6
HanXRQChr01g0025721 Helianthus annuus HOM05D004469 ORTHO05D005429 1.0e-07 62.8 56 58.9
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 1.0e-07 62.8 49 65.3
vmacro11088 Vaccinium macrocarpon HOM05D004469 ORTHO05D426737 2.9e-07 61.2 44 59.1
Eucgr.E04269 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.0e-07 60.5 46 65.2
RcHm_v2.0_Chr2g0147341 Rosa chinensis HOM05D004469 ORTHO05D005429 1.4e-06 58.9 168 36.3
Thecc.08G193600 Theobroma cacao HOM05D004469 ORTHO05D005429 1.4e-06 58.9 50 62.0
RcHm_v2.0_Chr7g0241351 Rosa chinensis HOM05D004469 ORTHO05D005429 2.5e-06 58.2 39 71.8
RcHm_v2.0_Chr1g0314531 Rosa chinensis HOM05D004469 ORTHO05D005429 7.1e-06 56.6 52 57.7
RcHm_v2.0_Chr1g0341151 Rosa chinensis HOM05D004469 ORTHO05D005429 9.3e-06 56.2 159 31.4


User provided reference genes

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