Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 7.1e-306 1053.1 541 100.0
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 5.5e-298 1026.9 541 97.2
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 9.7e-279 963.0 543 90.4
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 4.5e-276 954.1 543 89.9
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-271 939.1 543 88.0
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.4e-269 932.6 544 87.1
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 8.6e-251 870.2 518 84.4
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 3.9e-235 818.1 544 77.9
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 7.1e-229 797.3 549 75.8
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 2.7e-228 795.4 543 75.9
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 7.8e-228 793.9 543 75.1
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 2.5e-226 788.9 537 76.4
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.2e-224 781.2 543 74.8
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 7.6e-223 777.3 533 76.5
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 1.7e-222 776.2 532 76.1
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 2.2e-222 775.8 530 75.7
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 4.9e-222 774.6 534 75.5
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.4e-221 773.1 538 75.3
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 9.2e-221 770.4 543 74.2
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 6.0e-220 767.7 544 73.9
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 3.0e-219 765.4 532 73.1
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 8.6e-219 763.8 529 74.5
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 2.5e-218 762.3 530 74.9
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.3e-218 761.9 527 75.1
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 3.3e-218 761.9 527 75.3
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 9.6e-218 760.4 535 73.6
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 1.6e-217 759.6 533 72.0
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.1e-217 759.2 532 74.1
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 2.8e-217 758.8 523 74.8
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 4.7e-217 758.1 532 73.9
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 6.2e-217 757.7 530 75.1
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.4e-216 756.5 532 72.9
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 1.8e-216 756.1 533 73.5
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 6.9e-216 754.2 531 73.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 8.9e-216 753.8 528 73.5
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 1.2e-215 753.4 546 72.2
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 1.5e-215 753.1 546 72.9
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.5e-215 753.1 544 73.0
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.6e-215 752.3 532 73.3
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 3.4e-215 751.9 528 73.5
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 7.6e-215 750.7 528 73.1
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 9.9e-215 750.4 529 73.3
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 2.9e-214 748.8 588 68.5
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 2.9e-214 748.8 546 72.2
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 6.4e-214 747.7 529 73.5
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 2.4e-213 745.7 544 70.4
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 4.2e-213 745.0 534 70.8
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 5.4e-213 744.6 560 68.6
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 9.3e-213 743.8 533 72.2
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 1.2e-212 743.4 524 73.5
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 2.7e-212 742.3 533 72.2
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 2.3e-211 739.2 527 72.7
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 1.1e-210 736.9 583 68.1
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.5e-210 736.5 522 71.8
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.5e-210 736.5 532 71.2
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 4.3e-210 734.9 528 71.4
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 7.3e-210 734.2 526 71.7
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.8e-209 732.3 537 70.6
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.6e-209 731.9 542 69.6
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 1.1e-208 730.3 531 71.2
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 2.4e-208 729.2 550 69.6
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 9.0e-208 727.2 531 71.9
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 2.0e-207 726.1 547 68.7
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 5.8e-207 724.5 544 69.1
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.3e-206 723.4 546 69.4
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 1.7e-206 723.0 546 69.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.7e-206 723.0 541 68.6
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 1.4e-205 719.9 537 70.2
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 4.2e-205 718.4 545 68.4
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 5.4e-205 718.0 538 68.6
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 9.3e-205 717.2 545 68.3
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 1.6e-204 716.5 545 68.3
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 1.6e-204 716.5 545 68.3
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 2.7e-204 715.7 543 69.2
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 7.9e-204 714.1 545 68.1
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 1.0e-203 713.8 526 70.9
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.0e-203 712.2 548 68.4
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 5.6e-202 708.0 526 70.3
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.3e-201 706.8 532 69.0
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 6.2e-201 704.5 492 73.4
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 2.4e-200 702.6 525 69.7
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 9.9e-199 697.2 542 67.7
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 4.9e-198 694.9 495 72.9
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.0e-195 687.2 477 73.2
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 1.0e-195 687.2 520 67.7
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.0e-195 687.2 536 67.2
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 1.3e-195 686.8 538 66.5
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 3.0e-195 685.6 491 71.7
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.9e-195 685.3 489 74.0
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 5.6e-194 681.4 526 67.3
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.3e-193 680.2 528 67.0
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.9e-183 644.8 543 63.7
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 1.8e-179 633.3 535 62.4
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 2.8e-177 625.9 552 61.6
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 5.3e-176 621.7 590 61.2
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 6.1e-172 608.2 510 65.5
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 7.9e-172 607.8 414 75.8
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 8.2e-161 571.2 413 71.4
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.0e-158 564.3 409 71.1
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 3.1e-136 489.6 557 52.2
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 9.5e-133 478.0 549 51.7
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.8e-123 447.2 355 67.6
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 3.5e-111 406.4 543 42.5
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 7.8e-111 405.2 287 72.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 1.7e-110 404.1 528 44.5
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 7.6e-106 388.7 264 73.1
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 7.6e-106 388.7 549 42.6
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.8e-105 386.3 278 71.9
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 1.2e-100 371.3 286 68.2
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.5e-98 364.4 556 40.6
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 2.9e-97 360.1 322 60.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.3e-94 351.3 548 38.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 8.1e-84 315.5 431 42.0
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 3.8e-73 280.0 189 74.6
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 1.4e-72 278.1 627 31.9
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 2.3e-70 270.8 317 52.4
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 4.1e-67 260.0 288 54.2
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 3.2e-56 223.8 162 69.1
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 1.4e-54 218.4 152 71.1
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.6e-53 214.2 225 53.8
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.9e-50 203.0 100 94.0
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 1.4e-46 191.8 174 56.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 7.4e-45 186.0 713 25.7
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 5.0e-41 173.3 131 69.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.4e-35 155.2 108 74.1
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 5.5e-32 143.3 97 71.1
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.4e-32 142.5 123 65.0
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 1.0e-25 122.5 83 74.7
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.7e-25 121.7 179 39.1
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.4e-19 101.3 95 53.7
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.0e-18 98.2 100 54.0
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.2e-15 89.0 51 86.3
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 1.5e-08 65.5 52 69.2
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 2.1e-07 61.6 146 31.5
Medtr3g062620 Medicago truncatula HOM05D005743 ORTHO05D007031 2.3e-06 58.2 40 75.0
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 6.8e-06 56.6 369 23.0


User provided reference genes

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