Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 3.5e-140 501.9 305 100.0
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 8.9e-112 407.5 305 88.2
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 1.2e-87 327.4 309 77.0
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 1.4e-80 303.9 299 76.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 1.6e-60 237.3 303 55.8
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 1.6e-57 227.3 292 66.4
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 2.1e-44 183.7 302 49.7
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 4.8e-33 146.0 309 37.2
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 6.3e-33 145.6 298 44.0
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 5.3e-32 142.5 288 37.8
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 5.9e-31 139.0 309 50.5
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 2.9e-30 136.7 273 38.8
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 1.9e-29 134.0 323 37.5
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 2.5e-29 133.7 307 38.1
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 4.2e-29 132.9 228 43.9
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 7.2e-29 132.1 231 50.2
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 7.2e-29 132.1 234 38.9
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 6.1e-28 129.0 348 34.5
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.4e-27 127.9 316 37.3
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 1.4e-27 127.9 311 50.8
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.8e-27 127.5 285 37.9
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 3.9e-27 126.3 327 37.3
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 6.7e-27 125.6 233 43.3
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.1e-26 124.8 182 46.7
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 1.5e-26 124.4 293 44.7
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 1.5e-26 124.4 285 46.0
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 2.0e-26 124.0 350 34.3
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.0e-26 124.0 292 38.7
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 3.3e-26 123.2 296 43.9
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.3e-26 123.2 294 37.8
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 3.3e-26 123.2 329 35.3
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 7.4e-26 122.1 233 42.5
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 9.7e-26 121.7 329 35.3
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 9.7e-26 121.7 298 36.2
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 9.7e-26 121.7 278 37.4
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.3e-25 121.3 304 47.0
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.7e-25 120.9 319 34.8
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 2.2e-25 120.6 223 40.8
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 3.7e-25 119.8 244 45.9
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 6.3e-25 119.0 229 39.3
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 6.3e-25 119.0 266 38.0
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 2.4e-24 117.1 269 36.8
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 4.1e-24 116.3 286 49.0
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.1e-24 116.3 250 37.2
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 5.3e-24 115.9 338 33.4
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 7.0e-24 115.5 328 33.5
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 9.1e-24 115.2 282 37.2
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 1.2e-23 114.8 334 36.2
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 1.2e-23 114.8 238 39.9
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 1.6e-23 114.4 322 34.8
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 1.6e-23 114.4 276 48.6
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 2.6e-23 113.6 272 36.4
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 3.5e-23 113.2 319 32.6
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 4.5e-23 112.8 225 39.1
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 5.9e-23 112.5 219 39.7
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.0e-22 111.7 301 38.2
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 1.3e-22 111.3 224 42.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.3e-22 111.3 325 34.8
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 1.3e-22 111.3 216 40.7
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 1.7e-22 110.9 335 31.9
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 2.9e-22 110.2 323 40.9
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 2.9e-22 110.2 325 34.2
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 2.9e-22 110.2 297 34.0
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 3.8e-22 109.8 128 55.5
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 3.8e-22 109.8 304 42.4
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 3.8e-22 109.8 304 42.4
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 3.8e-22 109.8 290 34.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 5.0e-22 109.4 125 71.2
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 5.0e-22 109.4 325 34.5
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 5.0e-22 109.4 143 45.5
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 5.0e-22 109.4 143 45.5
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 5.0e-22 109.4 246 51.2
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 8.5e-22 108.6 287 44.3
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.1e-21 108.2 144 48.6
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 1.5e-21 107.8 261 34.5
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 1.5e-21 107.8 227 41.0
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 1.9e-21 107.5 321 33.6
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.9e-21 107.5 223 48.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.9e-21 107.5 325 34.5
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 2.5e-21 107.1 217 40.6
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.5e-21 107.1 282 34.4
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 2.5e-21 107.1 306 45.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.2e-21 106.3 269 35.3
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 1.2e-20 104.8 325 34.2
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 1.2e-20 104.8 132 47.0
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 1.6e-20 104.4 130 53.8
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 2.1e-20 104.0 161 42.9
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 2.1e-20 104.0 301 34.9
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.1e-20 104.0 302 46.7
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.7e-20 103.6 315 31.4
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 3.6e-20 103.2 326 37.7
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 6.1e-20 102.4 127 47.2
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 6.1e-20 102.4 124 46.0
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 1.0e-19 101.7 138 44.9
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.0e-19 101.7 219 38.4
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.0e-19 101.7 129 51.9
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.0e-19 101.7 317 46.4
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 1.0e-19 101.7 179 45.8
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-19 101.3 152 44.1
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 1.4e-19 101.3 125 48.8
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 1.8e-19 100.9 60 78.3
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 2.3e-19 100.5 130 45.4
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 5.2e-19 99.4 119 47.1
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 5.2e-19 99.4 269 41.6
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 6.7e-19 99.0 129 43.4
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 6.7e-19 99.0 247 38.9
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 8.8e-19 98.6 137 70.1
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-18 98.2 129 43.4
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-18 98.2 129 43.4
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 1.2e-18 98.2 129 43.4
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.2e-18 98.2 129 43.4
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 2.0e-18 97.4 191 38.7
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 2.0e-18 97.4 128 44.5
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 5.7e-18 95.9 117 46.2
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 9.7e-18 95.1 326 32.5
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 9.7e-18 95.1 203 35.5
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.2e-17 94.0 140 71.4
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.2e-17 94.0 129 76.0
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 2.8e-17 93.6 124 43.5
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 2.8e-17 93.6 124 43.5
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 2.8e-17 93.6 333 35.1
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 3.7e-17 93.2 221 35.3
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.7e-17 93.2 122 44.3
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 4.8e-17 92.8 122 44.3
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 4.8e-17 92.8 122 44.3
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 4.8e-17 92.8 122 44.3
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 6.3e-17 92.4 119 61.3
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 6.3e-17 92.4 347 33.7
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 8.2e-17 92.0 290 33.4
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.2e-17 92.0 150 40.0
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 8.2e-17 92.0 158 41.1
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 1.1e-16 91.7 126 54.8
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 1.1e-16 91.7 220 36.8
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 1.4e-16 91.3 170 35.3
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.8e-16 90.9 225 34.2
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-16 90.9 50 76.0
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 2.4e-16 90.5 119 57.1
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.1e-16 89.7 63 68.3
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 5.3e-16 89.4 115 54.8
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 7.0e-16 89.0 286 31.5
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 9.1e-16 88.6 241 31.1
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.2e-15 88.2 226 46.5
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.2e-15 88.2 119 42.9
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.2e-15 88.2 119 42.9
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 4.5e-15 86.3 106 55.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 2.9e-14 83.6 272 30.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 3.8e-14 83.2 186 38.7
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 5.0e-14 82.8 42 81.0
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 8.5e-14 82.0 180 33.3
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.5e-14 82.0 95 47.4
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 8.5e-14 82.0 61 60.7
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.5e-13 80.5 129 41.1
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 4.2e-13 79.7 173 39.3
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 5.5e-13 79.3 209 32.5
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 1.6e-12 77.8 294 27.9
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 1.4e-11 74.7 49 65.3
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.3e-11 73.9 55 58.2
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.8e-11 72.0 100 44.0
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.0e-10 70.9 42 69.0
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 2.0e-10 70.9 180 33.9
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 3.4e-10 70.1 180 33.9
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 4.8e-09 66.2 128 34.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 3.1e-08 63.5 97 39.2
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 5.4e-08 62.8 101 39.6
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.0e-07 60.8 41 58.5
Hund21288 Selenicereus undatus HOM05D000451 ORTHO05D000351 1.7e-06 57.8 56 50.0
Sabra16G0062200 Salix brachista HOM05D014635 ORTHO05D014310 8.6e-06 55.5 128 34.4
Thecc.05G174100 Theobroma cacao HOM05D014635 ORTHO05D014310 8.6e-06 55.5 130 32.3


User provided reference genes

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