Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 7.2e-74 280.4 134 100.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 3.8e-67 258.1 131 92.4
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 1.9e-66 255.8 131 90.8
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 7.2e-66 253.8 131 90.8
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.4e-64 249.6 131 88.5
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 2.3e-64 248.8 130 87.7
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.3e-62 243.0 131 86.3
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 1.1e-58 229.9 129 79.1
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 5.5e-58 227.6 129 79.1
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 1.6e-57 226.1 129 78.3
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.7e-57 225.3 129 76.0
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 2.7e-57 225.3 129 75.2
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 3.6e-57 224.9 129 77.5
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 6.1e-57 224.2 128 78.9
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 6.1e-57 224.2 129 80.6
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 6.1e-57 224.2 128 78.1
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 6.1e-57 224.2 128 77.3
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 8.0e-57 223.8 129 73.6
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 2.3e-56 222.2 129 74.4
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 5.2e-56 221.1 129 73.6
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 5.2e-56 221.1 129 73.6
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 5.2e-56 221.1 129 77.5
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 5.2e-56 221.1 129 74.4
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 6.8e-56 220.7 129 73.6
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 6.8e-56 220.7 132 76.5
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 1.2e-55 219.9 129 76.0
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 1.5e-55 219.5 128 75.8
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 1.5e-55 219.5 129 75.2
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 2.0e-55 219.2 129 73.6
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 2.6e-55 218.8 128 75.0
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 3.4e-55 218.4 129 73.6
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 3.4e-55 218.4 129 74.4
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 4.4e-55 218.0 129 73.6
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 4.4e-55 218.0 128 75.0
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 5.7e-55 217.6 129 77.5
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 9.8e-55 216.9 125 75.2
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 9.8e-55 216.9 129 72.9
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 1.7e-54 216.1 124 76.6
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 6.3e-54 214.2 129 72.1
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 6.3e-54 214.2 129 76.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 8.3e-54 213.8 129 72.9
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 1.1e-53 213.4 128 73.4
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 1.1e-53 213.4 129 71.3
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 1.1e-53 213.4 126 73.0
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.4e-53 213.0 129 71.3
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 1.4e-53 213.0 129 71.3
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 1.8e-53 212.6 128 73.4
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 2.4e-53 212.2 129 72.9
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.1e-53 211.8 128 73.4
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 4.1e-53 211.5 129 72.9
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.0e-53 210.7 124 74.2
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 7.0e-53 210.7 124 74.2
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.0e-52 209.1 128 74.2
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 3.5e-52 208.4 128 71.1
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 4.5e-52 208.0 128 71.1
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 4.5e-52 208.0 128 71.1
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 5.9e-52 207.6 129 71.3
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 5.9e-52 207.6 129 67.4
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 7.7e-52 207.2 129 72.1
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 7.7e-52 207.2 129 69.0
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 7.7e-52 207.2 129 70.5
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 1.0e-51 206.8 129 69.0
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.3e-51 206.5 128 71.1
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.9e-51 205.3 128 70.3
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 2.9e-51 205.3 128 70.3
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 2.9e-51 205.3 125 72.0
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 3.8e-51 204.9 120 75.8
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.8e-51 204.9 128 70.3
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 3.8e-51 204.9 129 65.9
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 5.0e-51 204.5 128 69.5
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 1.1e-50 203.4 129 69.8
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 1.1e-50 203.4 125 72.0
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.5e-50 203.0 129 72.1
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 2.5e-50 202.2 145 64.8
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 2.5e-50 202.2 129 69.8
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.5e-50 201.1 125 72.0
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 1.2e-49 199.9 129 67.4
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 3.6e-49 198.4 129 69.8
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 4.7e-49 198.0 142 64.1
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 6.1e-49 197.6 129 68.2
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 1.0e-48 196.8 129 68.2
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 1.0e-48 196.8 129 69.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 1.4e-48 196.4 127 70.9
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 2.3e-48 195.7 111 81.1
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 4.0e-48 194.9 129 67.4
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 4.0e-48 194.9 129 68.2
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 5.2e-48 194.5 129 68.2
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 1.2e-47 193.4 128 66.4
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 2.0e-47 192.6 125 70.4
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.7e-46 189.5 122 69.7
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 3.7e-46 188.3 120 70.8
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 8.3e-46 187.2 125 67.2
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.3e-43 179.9 127 65.4
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 1.3e-43 179.9 127 65.4
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 8.6e-43 177.2 127 63.8
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 2.0e-39 166.0 104 72.1
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.3e-38 163.3 132 56.1
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 1.1e-37 160.2 129 54.3
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 4.1e-37 158.3 132 60.6
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.9e-35 152.1 129 55.0
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.9e-35 152.1 146 51.4
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 2.0e-31 139.4 113 58.4
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 2.6e-31 139.0 83 74.7
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 7.0e-29 131.0 87 70.1
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 9.2e-29 130.6 76 76.3
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.2e-28 130.2 76 76.3
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 1.0e-27 127.1 149 40.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 1.0e-27 127.1 76 72.4
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.3e-27 126.7 75 76.0
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 1.3e-27 126.7 83 68.7
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 3.0e-27 125.6 76 75.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.0e-27 124.8 76 73.7
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.0e-27 124.8 76 73.7
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.6e-27 124.0 75 74.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 8.6e-27 124.0 75 74.7
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 8.6e-27 124.0 80 70.0
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.9e-18 96.3 55 70.9
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 5.6e-18 94.7 54 70.4
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.8e-17 92.4 54 75.9
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 2.8e-17 92.4 54 72.2
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 3.6e-17 92.0 54 70.4
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 4.7e-17 91.7 76 59.2
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 1.1e-16 90.5 54 68.5
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 1.4e-16 90.1 57 64.9
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.8e-16 89.7 63 66.7
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 1.8e-16 89.7 56 67.9
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 5.2e-16 88.2 54 66.7
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 2.0e-15 86.3 57 66.7
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 9.9e-15 84.0 46 76.1
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 1.1e-13 80.5 54 57.4
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 2.4e-13 79.3 51 66.7
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 7.1e-13 77.8 54 55.6
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 8.6e-11 70.9 67 53.7
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 9.6e-10 67.4 50 52.0
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 4.4e-07 58.5 110 30.0
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 5.8e-07 58.2 63 42.9
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 1.7e-06 56.6 110 30.0
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 1.7e-06 56.6 34 64.7


User provided reference genes

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