Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G128.125 Capsicum annuum HOM05D000668 ORTHO05D018902 3.2e-40 167.9 82 100.0
PGSC0003DMG400019902 Solanum tuberosum HOM05D000668 ORTHO05D018902 3.8e-25 117.9 74 74.3
Nitab4.5_0002873g0010 Nicotiana tabacum HOM05D000668 ORTHO05D018902 1.3e-09 66.2 74 45.9
Nitab4.5_0001272g0010 Nicotiana tabacum HOM05D000668 ORTHO05D018902 5.0e-09 64.3 74 47.3
Solyc02g014290.1 Solanum lycopersicum HOM05D000668 ORTHO05D018902 1.1e-08 63.2 63 42.9
Sopen02g003440 Solanum pennellii HOM05D000668 ORTHO05D018902 4.2e-08 61.2 60 43.3
PGSC0003DMG400001194 Solanum tuberosum HOM05D000668 ORTHO05D018902 2.7e-07 58.5 74 41.9
CAN.G1081.3 Capsicum annuum HOM05D000668 ORTHO05D000516 4.6e-07 57.8 54 40.7
CAN.G185.13 Capsicum annuum HOM05D000668 ORTHO05D000516 1.0e-06 56.6 47 48.9
Peaxi162Scf00363g00049 Petunia axillaris HOM05D000668 ORTHO05D018902 1.0e-06 56.6 78 43.6
arahy.Tifrunner.gnm1.ann1.FIQ4J0 Arachis hypogaea HOM05D000668 ORTHO05D015975 1.3e-06 56.2 53 41.5
arahy.Tifrunner.gnm1.ann1.JCRS0V Arachis hypogaea HOM05D000668 ORTHO05D015975 1.3e-06 56.2 53 41.5
Carub.0006s2487 Capsella rubella HOM05D000668 ORTHO05D000516 1.3e-06 56.2 60 43.3
MSTRG.20420 Avicennia marina HOM05D000668 ORTHO05D000516 1.8e-06 55.8 47 48.9
MSTRG.27981 Avicennia marina HOM05D000668 ORTHO05D000516 1.8e-06 55.8 47 48.9
CAN.G665.20 Capsicum annuum HOM05D000668 ORTHO05D000516 1.8e-06 55.8 47 51.1
AUR62032002 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.8e-06 55.8 46 50.0
AUR62040735 Chenopodium quinoa HOM05D000668 ORTHO05D000516 1.8e-06 55.8 46 50.0
Duzib109G0002 Durio zibethinus HOM05D000668 ORTHO05D000516 1.8e-06 55.8 44 54.5
Haze_01205 Corylus avellana HOM05D000668 ORTHO05D000516 2.3e-06 55.5 60 46.7
Rhsim07G0187600 Rhododendron simsii HOM05D000668 ORTHO05D000516 2.3e-06 55.5 60 46.7
Sc19g0005310 Simmondsia chinensis HOM05D000668 ORTHO05D000516 2.3e-06 55.5 46 50.0
C05p61740 Brassica napus HOM05D000668 ORTHO05D000516 3.0e-06 55.1 50 46.0
Ciclev10002897m.g Citrus clementina HOM05D000668 ORTHO05D000516 3.0e-06 55.1 61 44.3
Lj4g0026721 Lotus japonicus HOM05D000668 ORTHO05D000516 3.0e-06 55.1 46 50.0
Oeu012116.1 Olea europaea HOM05D000668 ORTHO05D000516 3.0e-06 55.1 47 48.9
Potri.004G044900 Populus trichocarpa HOM05D000668 ORTHO05D000516 3.0e-06 55.1 43 53.5
Potri.004G045000 Populus trichocarpa HOM05D000668 ORTHO05D000516 3.0e-06 55.1 43 53.5
Sc09g0002960 Simmondsia chinensis HOM05D000668 ORTHO05D000516 3.0e-06 55.1 60 43.3
AL6G39280 Arabidopsis lyrata HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
BcaC04g23641 Brassica carinata HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
A09p05400 Brassica napus HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
C09p05880 Brassica napus HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
BolC9t53514H Brassica oleracea HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
BraA09t36178Z Brassica rapa HOM05D000668 ORTHO05D000516 3.9e-06 54.7 60 43.3
Lj5g0010157 Lotus japonicus HOM05D000668 ORTHO05D000516 3.9e-06 54.7 61 42.6
Lalb_Chr07g0177711 Lupinus albus HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 50.0
MD16G1169200 Malus domestica HOM05D000668 ORTHO05D000516 3.9e-06 54.7 43 51.2
Medtr7g113080 Medicago truncatula HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 52.2
Sabra04G0028000 Salix brachista HOM05D000668 ORTHO05D000516 3.9e-06 54.7 42 54.8
Solyc12g005460.2 Solanum lycopersicum HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 45.7
Sopen12g001450 Solanum pennellii HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 45.7
SGA_v2.0_scaffold34G13812 Striga asiatica HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 50.0
SGA_v2.0_scaffold73G24252 Striga asiatica HOM05D000668 ORTHO05D000516 3.9e-06 54.7 46 50.0
CDE10G1111 Ceratophyllum demersum HOM05D000962 ORTHO05D000752 5.1e-06 54.3 48 47.9
ECA240G1238 Erigeron canadensis HOM05D000668 ORTHO05D000516 5.1e-06 54.3 61 41.0
Lalb_Chr04g0260681 Lupinus albus HOM05D000668 ORTHO05D000516 5.1e-06 54.3 43 53.5
Lalb_Chr13g0303591 Lupinus albus HOM05D000668 ORTHO05D000516 5.1e-06 54.3 43 53.5
Potri.013G017400 Populus trichocarpa HOM05D000668 ORTHO05D000516 5.1e-06 54.3 44 50.0
PGSC0003DMG400013733 Solanum tuberosum HOM05D000668 ORTHO05D000516 5.1e-06 54.3 46 45.7
BcaB04g19264 Brassica carinata HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BcaC05g30117 Brassica carinata HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BcaC05g30163 Brassica carinata HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BcaC09g47828 Brassica carinata HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
A03p34150 Brassica napus HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BNapus_Darmor_BZH_scaffold_114p00060 Brassica napus HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BolC5t34832H Brassica oleracea HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BraA03t12589Z Brassica rapa HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
BraA05t19071Z Brassica rapa HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
Carub.0003s0478 Capsella rubella HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
Eucgr.H04532 Eucalyptus grandis HOM05D000668 ORTHO05D000516 6.7e-06 53.9 44 52.3
Thhalv10021783m.g Eutrema salsugineum HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
Gohir.A11G267800 Gossypium hirsutum HOM05D000668 ORTHO05D000516 6.7e-06 53.9 61 44.3
Gorai.007G299900 Gossypium raimondii HOM05D000668 ORTHO05D000516 6.7e-06 53.9 61 44.3
HanXRQChr13g0411301 Helianthus annuus HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
Hma1.2p1_0078F.1_g040560 Hydrangea macrophylla HOM05D000668 ORTHO05D000516 6.7e-06 53.9 44 52.3
Lalb_Chr02g0148131 Lupinus albus HOM05D000668 ORTHO05D000516 6.7e-06 53.9 43 53.5
Lalb_Chr12g0196571 Lupinus albus HOM05D000668 ORTHO05D000516 6.7e-06 53.9 44 52.3
Nitab4.5_0000191g0100 Nicotiana tabacum HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
Nitab4.5_0003546g0030 Nicotiana tabacum HOM05D000668 ORTHO05D000516 6.7e-06 53.9 46 47.8
TWI12G0335 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 6.7e-06 53.9 44 50.0
TWI53G0565 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 6.7e-06 53.9 47 48.9
TWI56G0658 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 6.7e-06 53.9 44 52.3
Aqoxy2G02986 Aquilegia oxysepala HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 51.2
CSS0039658 Camellia sinensis var. sinensis HOM05D000668 ORTHO05D000516 8.7e-06 53.5 60 45.0
CAN.G339.33 Capsicum annuum HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 53.5
Glyma.03G236000 Glycine max HOM05D000668 ORTHO05D000516 8.7e-06 53.5 60 45.0
Glyma.19G233700 Glycine max HOM05D000668 ORTHO05D000516 8.7e-06 53.5 60 45.0
Gohir.A08G208700 Gossypium hirsutum HOM05D000668 ORTHO05D000516 8.7e-06 53.5 61 44.3
Gohir.D08G225600 Gossypium hirsutum HOM05D000668 ORTHO05D000516 8.7e-06 53.5 61 44.3
Gorai.004G239600 Gossypium raimondii HOM05D000668 ORTHO05D000516 8.7e-06 53.5 61 44.3
Lalb_Chr06g0167711 Lupinus albus HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 53.5
Phvul.006G089900 Phaseolus vulgaris HOM05D000668 ORTHO05D000516 8.7e-06 53.5 60 45.0
Potri.014G131800 Populus trichocarpa HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 51.2
Sabra04G0028100 Salix brachista HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 51.2
Solyc01g067900.3 Solanum lycopersicum HOM05D000668 ORTHO05D000516 8.7e-06 53.5 46 47.8
Sopen01g029860 Solanum pennellii HOM05D000668 ORTHO05D000516 8.7e-06 53.5 46 47.8
TWI09G0853 Tripterygium wilfordii HOM05D000668 ORTHO05D000516 8.7e-06 53.5 47 48.9
TAR636G0737 Trochodendron aralioides HOM05D000668 ORTHO05D000516 8.7e-06 53.5 43 53.5
VMungo0540G0997 Vigna mungo HOM05D000668 ORTHO05D000516 8.7e-06 53.5 60 45.0


User provided reference genes

Program Settings