Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1277.4 Capsicum annuum HOM05D005538 ORTHO05D007055 2.6e-86 322.0 164 100.0
PGSC0003DMG400030010 Solanum tuberosum HOM05D005538 ORTHO05D007055 3.6e-75 285.0 159 84.9
Peaxi162Scf00220g00119 Petunia axillaris HOM05D005538 ORTHO05D007055 4.7e-75 284.6 158 82.3
Solyc01g009780.3 Solanum lycopersicum HOM05D005538 ORTHO05D007055 4.4e-73 278.1 159 82.4
Sopen01g005330 Solanum pennellii HOM05D005538 ORTHO05D007055 4.4e-73 278.1 159 82.4
Nitab4.5_0001600g0070 Nicotiana tabacum HOM05D005538 ORTHO05D007055 5.9e-70 267.7 150 80.0
Oeu003281.1 Olea europaea HOM05D005538 ORTHO05D007055 8.0e-67 257.3 158 74.7
SGA_v2.0_scaffold80G25945 Striga asiatica HOM05D005538 ORTHO05D007055 1.8e-63 246.1 158 70.3
Actinidia30605 Actinidia chinensis HOM05D005538 ORTHO05D007055 7.0e-63 244.2 158 72.8
Hma1.2p1_0459F.1_g157240 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 1.2e-62 243.4 157 69.4
Dinv06880 Davidia involucrata HOM05D005538 ORTHO05D007055 1.6e-62 243.0 158 70.9
Migut.K01033 Erythranthe guttata HOM05D005538 ORTHO05D007055 1.6e-62 243.0 159 69.8
SalBow2G1516 Salvia bowleyana HOM05D005538 ORTHO05D007055 3.8e-61 238.4 158 70.9
PSO017G1114 Papaver somniferum HOM05D005538 ORTHO05D007055 5.5e-60 234.6 158 65.8
MSTRG.469 Avicennia marina HOM05D005538 ORTHO05D007055 9.4e-60 233.8 164 75.6
TAR371G0765 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.4e-60 233.8 157 66.9
Actinidia22132 Actinidia chinensis HOM05D005538 ORTHO05D007055 1.6e-59 233.0 158 69.0
QL03p050357 Quercus lobata HOM05D005538 ORTHO05D007055 1.6e-59 233.0 122 80.3
MBI07_g37483_MAGBIO Magnolia biondii HOM05D005538 ORTHO05D007055 2.1e-59 232.6 158 66.5
PSO478G3672 Papaver somniferum HOM05D005538 ORTHO05D007055 2.1e-59 232.6 158 65.2
unitig_8.g3121 Utricularia gibba HOM05D005538 ORTHO05D007055 2.1e-59 232.6 156 68.6
Eucgr.B03544 Eucalyptus grandis HOM05D005538 ORTHO05D007055 2.7e-59 232.3 123 80.5
HanXRQChr06g0175181 Helianthus annuus HOM05D005538 ORTHO05D007055 4.7e-59 231.5 157 68.2
TWI18G0823 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.1e-59 231.1 123 80.5
CSS0040217 Camellia sinensis var. sinensis HOM05D005538 ORTHO05D007055 8.0e-59 230.7 162 66.0
Manes.08G103200 Manihot esculenta HOM05D005538 ORTHO05D007055 8.0e-59 230.7 123 79.7
CiPaw.05G104000 Carya illinoinensis HOM05D005538 ORTHO05D007055 1.0e-58 230.3 123 78.9
Lj3A1076T34 Lonicera japonica HOM05D005538 ORTHO05D007055 1.0e-58 230.3 163 71.2
vmacro22631 Vaccinium macrocarpon HOM05D005538 ORTHO05D007055 1.0e-58 230.3 158 70.9
CANSAT56G2313 Cannabis sativa HOM05D005538 ORTHO05D007055 3.0e-58 228.8 122 75.4
Duzib052G1117 Durio zibethinus HOM05D005538 ORTHO05D007055 3.0e-58 228.8 123 79.7
ECA246G0794 Erigeron canadensis HOM05D005538 ORTHO05D007055 1.2e-57 226.9 162 72.8
Cfa009412 Carpinus fangiana HOM05D005538 ORTHO05D007055 2.0e-57 226.1 123 78.0
CsaV3_6G007860 Cucumis sativus L. HOM05D005538 ORTHO05D007055 2.6e-57 225.7 122 77.9
Sabra03G0121100 Salix brachista HOM05D005538 ORTHO05D007055 2.6e-57 225.7 123 78.0
TAR622G0886 Trochodendron aralioides HOM05D005538 ORTHO05D007055 2.6e-57 225.7 157 66.2
Haze_12470 Corylus avellana HOM05D005538 ORTHO05D007055 3.4e-57 225.3 123 77.2
Nn3g16327 Nelumbo nucifera HOM05D005538 ORTHO05D007055 3.4e-57 225.3 162 63.6
Aqoxy3G01758 Aquilegia oxysepala HOM05D005538 ORTHO05D007055 4.4e-57 224.9 156 64.7
Cc11_g17450 Coffea canephora HOM05D005538 ORTHO05D007055 5.7e-57 224.6 123 78.0
THA.LOC104825475 Tarenaya hassleriana HOM05D005538 ORTHO05D007055 7.5e-57 224.2 123 78.9
MELO3C022346.2 Cucumis melo HOM05D005538 ORTHO05D007055 9.8e-57 223.8 122 77.0
ATR0582G064 Amborella trichopoda HOM05D005538 ORTHO05D007055 1.7e-56 223.0 157 63.7
AT5G13190 Arabidopsis thaliana HOM05D005538 ORTHO05D007055 1.7e-56 223.0 123 78.9
Manes.09G185800 Manihot esculenta HOM05D005538 ORTHO05D007055 1.7e-56 223.0 123 78.0
Potri.003G165900 Populus trichocarpa HOM05D005538 ORTHO05D007055 1.7e-56 223.0 123 77.2
AL6G23800 Arabidopsis lyrata HOM05D005538 ORTHO05D007055 2.2e-56 222.6 123 78.9
A02p01730 Brassica napus HOM05D005538 ORTHO05D007055 2.2e-56 222.6 123 78.9
BraA02t05152Z Brassica rapa HOM05D005538 ORTHO05D007055 2.2e-56 222.6 123 78.9
GSVIVG01000954001 Vitis vinifera HOM05D005538 ORTHO05D007055 2.2e-56 222.6 122 75.4
Ciclev10033047m.g Citrus clementina HOM05D005538 ORTHO05D007055 2.8e-56 222.2 123 75.6
Thhalv10014995m.g Eutrema salsugineum HOM05D005538 ORTHO05D007055 2.8e-56 222.2 123 78.9
HanXRQChr17g0540491 Helianthus annuus HOM05D005538 ORTHO05D007055 2.8e-56 222.2 124 75.8
BcaNung01169 Brassica carinata HOM05D005538 ORTHO05D007055 3.7e-56 221.9 123 79.7
Carub.0006s1136 Capsella rubella HOM05D005538 ORTHO05D007055 3.7e-56 221.9 123 78.0
Aa31LG3G14470 Aethionema arabicum HOM05D005538 ORTHO05D007055 4.8e-56 221.5 123 78.0
C02p05970 Brassica napus HOM05D005538 ORTHO05D007055 6.3e-56 221.1 123 78.9
BolC2t06540H Brassica oleracea HOM05D005538 ORTHO05D007055 6.3e-56 221.1 123 78.9
Thecc.02G196400 Theobroma cacao HOM05D005538 ORTHO05D007055 6.3e-56 221.1 123 78.0
Potri.001G061900 Populus trichocarpa HOM05D005538 ORTHO05D007055 8.3e-56 220.7 123 75.6
TAR629G0377 Trochodendron aralioides HOM05D005538 ORTHO05D007055 8.3e-56 220.7 157 63.7
Ah.03g135760 Amaranthus hybridus HOM05D005538 ORTHO05D007055 1.4e-55 219.9 154 64.3
Gohir.A12G140500 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.4e-55 219.2 123 76.4
CDE05G2048 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.1e-55 218.8 166 60.2
COL.COLO4_34942 Corchorus olitorius HOM05D005538 ORTHO05D007055 4.1e-55 218.4 123 76.4
CiPaw.06G107500 Carya illinoinensis HOM05D005538 ORTHO05D007055 5.4e-55 218.0 122 76.2
Glyma.08G360100 Glycine max HOM05D005538 ORTHO05D007055 5.4e-55 218.0 120 76.7
Sp6g30790 Schrenkiella parvula HOM05D005538 ORTHO05D007055 5.4e-55 218.0 123 77.2
Duzib248G0674 Durio zibethinus HOM05D005538 ORTHO05D007055 7.0e-55 217.6 123 75.6
Glyma.18G301900 Glycine max HOM05D005538 ORTHO05D007055 7.0e-55 217.6 120 76.7
BraA10t44563Z Brassica rapa HOM05D005538 ORTHO05D007055 9.1e-55 217.2 123 77.2
Gohir.D12G145100 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.2e-54 216.9 123 75.6
Gorai.008G156500 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.2e-54 216.9 123 75.6
MD13G1126300 Malus domestica HOM05D005538 ORTHO05D007055 1.6e-54 216.5 122 76.2
Sed0021477 Sechium edule HOM05D005538 ORTHO05D007055 1.6e-54 216.5 123 74.0
Phvul.008G000500 Phaseolus vulgaris HOM05D005538 ORTHO05D007055 2.0e-54 216.1 120 75.8
CDE05G1586 Ceratophyllum demersum HOM05D005538 ORTHO05D007055 3.5e-54 215.3 166 59.0
MD16G1126800 Malus domestica HOM05D005538 ORTHO05D007055 3.5e-54 215.3 122 74.6
C09p63880 Brassica napus HOM05D005538 ORTHO05D007055 5.9e-54 214.5 124 77.4
BolC9t59228H Brassica oleracea HOM05D005538 ORTHO05D007055 5.9e-54 214.5 124 77.4
Hund25495 Selenicereus undatus HOM05D005538 ORTHO05D007055 5.9e-54 214.5 119 76.5
AUR62028865 Chenopodium quinoa HOM05D005538 ORTHO05D007055 7.7e-54 214.2 159 63.5
Psat3g208320 Pisum sativum HOM05D005538 ORTHO05D007055 7.7e-54 214.2 118 78.0
A10p25020 Brassica napus HOM05D005538 ORTHO05D007055 1.3e-53 213.4 124 76.6
ClCG06G001820 Citrullus lanatus HOM05D005538 ORTHO05D007055 1.3e-53 213.4 122 73.8
Gohir.A03G151200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-53 213.0 125 75.2
Gohir.D02G174200 Gossypium hirsutum HOM05D005538 ORTHO05D007055 1.7e-53 213.0 125 75.2
Gorai.005G195900 Gossypium raimondii HOM05D005538 ORTHO05D007055 1.7e-53 213.0 125 75.2
Prupe.1G219100 Prunus persica HOM05D005538 ORTHO05D007055 5.0e-53 211.5 123 73.2
Medtr7g005440 Medicago truncatula HOM05D005538 ORTHO05D007055 6.5e-53 211.1 118 78.0
VMungo1383G2546 Vigna mungo HOM05D005538 ORTHO05D007055 6.5e-53 211.1 118 76.3
RcHm_v2.0_Chr4g0429351 Rosa chinensis HOM05D005538 ORTHO05D007055 1.1e-52 210.3 153 65.4
FAN12G2387 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.2e-52 208.4 123 74.8
FAN17G2587 Fragaria x ananassa HOM05D005538 ORTHO05D007055 4.2e-52 208.4 123 74.8
EL10Ac6g13582 Beta vulgaris HOM05D005538 ORTHO05D007055 1.6e-51 206.5 162 58.6
Ah.02g131140 Amaranthus hybridus HOM05D005538 ORTHO05D007055 2.1e-51 206.1 154 61.7
FAN07G2678 Fragaria x ananassa HOM05D005538 ORTHO05D007055 3.6e-51 205.3 119 75.6
TPR.G15629 Trifolium pratense HOM05D005538 ORTHO05D007055 2.3e-50 202.6 121 73.6
CARHR200280 Cardamine hirsuta HOM05D005538 ORTHO05D007055 3.0e-50 202.2 130 70.8
Ca_06515_v3 Cicer arietinum L. HOM05D005538 ORTHO05D007055 4.0e-50 201.8 121 71.9
Gohir.D01G019700 Gossypium hirsutum HOM05D005538 ORTHO05D007055 5.2e-50 201.4 123 71.5
Gorai.002G022100 Gossypium raimondii HOM05D005538 ORTHO05D007055 8.9e-50 200.7 123 71.5
Os02g0515600 Oryza sativa ssp. japonica HOM05D005538 ORTHO05D007055 1.5e-49 199.9 159 57.9
Gohir.A01G021300 Gossypium hirsutum HOM05D005538 ORTHO05D007055 2.6e-49 199.1 123 70.7
Lj1g0020005 Lotus japonicus HOM05D005538 ORTHO05D007055 9.8e-49 197.2 112 76.8
Rhsim12G0021000 Rhododendron simsii HOM05D005538 ORTHO05D007055 1.7e-48 196.4 165 60.6
Hund28220 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.8e-45 185.3 113 69.0
Hund28225 Selenicereus undatus HOM05D005538 ORTHO05D007055 3.8e-45 185.3 113 69.0
Sc04g0010460 Simmondsia chinensis HOM05D005538 ORTHO05D007055 1.6e-43 179.9 138 61.6
Zm00001eb241880 Zea mays HOM05D005538 ORTHO05D007055 3.7e-40 168.7 195 46.2
Atru.chr11.2402 Acer truncatum HOM05D005538 ORTHO05D007055 1.1e-39 167.2 147 55.1
SMO271G0002 Selaginella moellendorffii HOM05D005538 ORTHO05D007055 9.2e-39 164.1 119 61.3
FvH4_4g23080 Fragaria vesca HOM05D005538 ORTHO05D007055 2.0e-38 162.9 98 72.4
Pp3c26_1170 Physcomitrium patens HOM05D005538 ORTHO05D007055 2.7e-38 162.5 159 50.3
AagrBONN_evm.TU.Sc2ySwM_117.1139 Anthoceros agrestis HOM05D005538 ORTHO05D007055 7.8e-38 161.0 119 53.8
CBR_g4442 Chara braunii HOM05D005538 ORTHO05D007055 3.9e-37 158.7 119 56.3
TWI75G1796 Tripterygium wilfordii HOM05D005538 ORTHO05D007055 6.4e-32 141.4 87 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1282 Anthoceros agrestis HOM05D005538 ORTHO05D007055 4.1e-31 138.7 144 45.8
Nitab4.5_0007554g0010 Nicotiana tabacum HOM05D007298 ORTHO05D009226 2.3e-29 132.9 136 51.5
HPP92_011548 Vanilla planifolia HOM05D005538 ORTHO05D007055 7.3e-28 127.9 72 76.4
Oeu039177.1 Olea europaea HOM05D005538 ORTHO05D007055 1.2e-25 120.6 59 86.4
Cpa.g.sc123.51 Carica papaya HOM05D005538 ORTHO05D007055 4.4e-25 118.6 58 84.5
SalBow8G4168 Salvia bowleyana HOM05D005538 ORTHO05D007055 8.9e-18 94.4 88 54.5
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.4e-17 92.4 54 68.5
RcHm_v2.0_Chr4g0404941 Rosa chinensis HOM05D005538 ORTHO05D007055 9.9e-17 90.9 105 46.7
TAR629G2749 Trochodendron aralioides HOM05D005538 ORTHO05D007055 1.3e-16 90.5 88 50.0
TAR628G0286 Trochodendron aralioides HOM05D000367 ORTHO05D001438 4.9e-16 88.6 87 49.4
Lsat_1_v5_gn_6_34980 Lactuca sativa HOM05D005538 ORTHO05D007055 1.1e-15 87.4 111 41.4
TAR623G1654 Trochodendron aralioides HOM05D005538 ORTHO05D007055 9.2e-15 84.3 87 47.1
Hma1.2p1_0365F.1_g136780 Hydrangea macrophylla HOM05D005538 ORTHO05D007055 6.0e-14 81.6 79 53.2
BcaB01g05369 Brassica carinata HOM05D005538 ORTHO05D007055 1.1e-12 77.4 120 37.5
DCAR_028448 Daucus carota HOM05D005538 ORTHO05D007055 3.6e-11 72.4 40 72.5
RcHm_v2.0_Chr5g0057011 Rosa chinensis HOM05D005538 ORTHO05D007055 6.2e-11 71.6 102 38.2
SEGI_18844 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 6.2e-11 71.6 49 59.2
SalBow8G3396 Salvia bowleyana HOM05D018271 ORTHO05D007055 8.1e-11 71.2 68 57.4
RcHm_v2.0_Chr1g0337501 Rosa chinensis HOM05D005538 ORTHO05D007055 2.4e-10 69.7 111 36.9
SEGI_11247 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 3.1e-10 69.3 56 51.8
SEGI_29074 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.0e-10 67.8 52 57.7
SEGI_30741 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 9.0e-10 67.8 52 57.7
SEGI_18352 Sequoiadendron giganteum HOM05D005538 ORTHO05D012435 4.4e-09 65.5 53 52.8
SEGI_11753 Sequoiadendron giganteum HOM05D005538 ORTHO05D007055 2.7e-06 56.2 46 52.2
HPP92_011549 Vanilla planifolia HOM05D005538 ORTHO05D431340 2.7e-06 56.2 61 45.9


User provided reference genes

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