Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1274.31 Capsicum annuum HOM05D005052 ORTHO05D006226 5.9e-250 867.1 442 100.0
Nitab4.5_0001892g0080 Nicotiana tabacum HOM05D005052 ORTHO05D006226 3.7e-236 821.2 443 94.4
Nitab4.5_0008943g0020 Nicotiana tabacum HOM05D005052 ORTHO05D006226 1.9e-235 818.9 443 93.7
Solyc02g083590.3 Solanum lycopersicum HOM05D005052 ORTHO05D006226 1.1e-232 809.7 443 93.0
Sopen02g028370 Solanum pennellii HOM05D005052 ORTHO05D006226 4.3e-232 807.7 443 92.8
PGSC0003DMG400003582 Solanum tuberosum HOM05D005052 ORTHO05D006226 4.4e-229 797.7 443 92.3
Peaxi162Scf00328g00523 Petunia axillaris HOM05D005052 ORTHO05D006226 1.1e-216 756.5 448 88.2
Cc07_g11060 Coffea canephora HOM05D005052 ORTHO05D006226 2.5e-208 728.8 442 83.0
Oeu048477.1 Olea europaea HOM05D005052 ORTHO05D006226 9.6e-200 700.3 453 79.5
SalBow3G4284 Salvia bowleyana HOM05D005052 ORTHO05D006226 2.4e-198 695.7 445 81.1
MSTRG.2728 Avicennia marina HOM05D005052 ORTHO05D006226 1.3e-193 679.9 447 77.6
vmacro18426 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 1.8e-193 679.5 443 77.9
Migut.C00533 Erythranthe guttata HOM05D005052 ORTHO05D006226 2.3e-193 679.1 446 78.5
Actinidia22954 Actinidia chinensis HOM05D005052 ORTHO05D006226 6.7e-193 677.6 378 86.8
Eucgr.J02467 Eucalyptus grandis HOM05D005052 ORTHO05D006226 8.7e-193 677.2 392 84.7
GSVIVG01018732001 Vitis vinifera HOM05D005052 ORTHO05D006226 1.9e-192 676.0 462 75.1
Dinv40116 Davidia involucrata HOM05D005052 ORTHO05D006226 4.3e-192 674.9 401 83.0
CiPaw.07G061100 Carya illinoinensis HOM05D005052 ORTHO05D006226 9.6e-192 673.7 412 81.6
SGA_v2.0_scaffold94G28549 Striga asiatica HOM05D005052 ORTHO05D006226 9.6e-192 673.7 446 77.6
Gohir.D12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 1.3e-191 673.3 438 76.9
CiPaw.08G130500 Carya illinoinensis HOM05D005052 ORTHO05D006226 2.1e-191 672.5 393 84.5
TWI53G1960 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 2.1e-191 672.5 409 81.4
CANSAT25G2560 Cannabis sativa HOM05D005052 ORTHO05D006226 2.8e-191 672.2 405 82.5
MELO3C013755.2 Cucumis melo HOM05D005052 ORTHO05D006226 3.7e-191 671.8 396 83.1
RcHm_v2.0_Chr2g0099021 Rosa chinensis HOM05D005052 ORTHO05D006226 8.1e-191 670.6 415 80.5
CsaV3_3G000670 Cucumis sativus L. HOM05D005052 ORTHO05D006226 1.4e-190 669.8 432 78.5
Lj4A222T51 Lonicera japonica HOM05D005052 ORTHO05D006226 2.4e-190 669.1 476 73.7
Atru.chr3.855 Acer truncatum HOM05D005052 ORTHO05D006226 3.1e-190 668.7 409 81.4
COL.COLO4_22462 Corchorus olitorius HOM05D005052 ORTHO05D006226 4.0e-190 668.3 439 75.9
Gohir.A12G058900 Gossypium hirsutum HOM05D005052 ORTHO05D006226 4.0e-190 668.3 438 76.7
HanXRQChr13g0424561 Helianthus annuus HOM05D005052 ORTHO05D006226 4.0e-190 668.3 449 77.3
Sabra05G0090900 Salix brachista HOM05D005052 ORTHO05D006226 4.0e-190 668.3 446 77.1
CARHR281630 Cardamine hirsuta HOM05D005052 ORTHO05D006226 5.3e-190 667.9 385 86.0
Glyma.11G078700 Glycine max HOM05D005052 ORTHO05D006226 5.3e-190 667.9 391 83.9
VMungo1215G2918 Vigna mungo HOM05D005052 ORTHO05D006226 1.5e-189 666.4 412 81.3
ClCG10G000590 Citrullus lanatus HOM05D005052 ORTHO05D006226 2.0e-189 666.0 396 82.8
THA.LOC104821339 Tarenaya hassleriana HOM05D005052 ORTHO05D006226 3.4e-189 665.2 441 76.6
Cpa.g.sc6.286 Carica papaya HOM05D005052 ORTHO05D006226 4.5e-189 664.8 406 81.8
Gorai.008G062200 Gossypium raimondii HOM05D005052 ORTHO05D006226 5.8e-189 664.5 439 77.0
Ca_24920_v3 Cicer arietinum L. HOM05D005052 ORTHO05D006226 7.6e-189 664.1 386 83.2
Rhsim08G0032100 Rhododendron simsii HOM05D005052 ORTHO05D006226 9.9e-189 663.7 388 82.7
Thhalv10004219m.g Eutrema salsugineum HOM05D005052 ORTHO05D006226 1.7e-188 662.9 410 80.0
Prupe.7G171600 Prunus persica HOM05D005052 ORTHO05D006226 2.2e-188 662.5 386 82.9
Glyma.01G164300 Glycine max HOM05D005052 ORTHO05D006226 2.9e-188 662.1 391 83.6
Nn5g28565 Nelumbo nucifera HOM05D005052 ORTHO05D006226 3.8e-188 661.8 402 81.8
QL06p051082 Quercus lobata HOM05D005052 ORTHO05D006226 6.4e-188 661.0 456 75.0
Sc03g0003700 Simmondsia chinensis HOM05D005052 ORTHO05D006226 6.4e-188 661.0 450 76.2
Thecc.01G014600 Theobroma cacao HOM05D005052 ORTHO05D006226 6.4e-188 661.0 442 75.3
Sp2g30570 Schrenkiella parvula HOM05D005052 ORTHO05D006226 1.1e-187 660.2 408 80.9
AL8G45470 Arabidopsis lyrata HOM05D005052 ORTHO05D006226 1.9e-187 659.4 411 80.0
MD15G1242600 Malus domestica HOM05D005052 ORTHO05D006226 1.9e-187 659.4 459 73.9
Sed0003793 Sechium edule HOM05D005052 ORTHO05D006226 1.9e-187 659.4 435 77.0
arahy.Tifrunner.gnm1.ann1.1KVD1S Arachis hypogaea HOM05D005052 ORTHO05D006226 2.5e-187 659.1 441 76.2
arahy.Tifrunner.gnm1.ann1.PYN71E Arachis hypogaea HOM05D005052 ORTHO05D006226 2.5e-187 659.1 441 76.2
BraA09t36659Z Brassica rapa HOM05D005052 ORTHO05D006226 3.2e-187 658.7 439 77.4
Duzib147G0491 Durio zibethinus HOM05D005052 ORTHO05D006226 3.2e-187 658.7 444 75.5
vmacro22193 Vaccinium macrocarpon HOM05D005052 ORTHO05D006226 3.2e-187 658.7 513 67.6
BcaB04g20124 Brassica carinata HOM05D005052 ORTHO05D006226 4.2e-187 658.3 443 75.6
A09p10150 Brassica napus HOM05D005052 ORTHO05D006226 4.2e-187 658.3 442 76.2
ECA240G3065 Erigeron canadensis HOM05D005052 ORTHO05D006226 4.2e-187 658.3 443 76.1
AT5G66120 Arabidopsis thaliana HOM05D005052 ORTHO05D006226 5.5e-187 657.9 423 78.5
Potri.005G110900 Populus trichocarpa HOM05D005052 ORTHO05D006226 5.5e-187 657.9 437 76.4
Cfa007001 Carpinus fangiana HOM05D005052 ORTHO05D006226 7.1e-187 657.5 386 82.6
FAN28G0876 Fragaria x ananassa HOM05D005052 ORTHO05D006226 7.1e-187 657.5 406 80.3
Carub.0008s2837 Capsella rubella HOM05D005052 ORTHO05D006226 1.2e-186 656.8 411 79.8
PSO541G6199 Papaver somniferum HOM05D005052 ORTHO05D006226 1.2e-186 656.8 409 79.5
Aa31LG1G14600 Aethionema arabicum HOM05D005052 ORTHO05D006226 1.6e-186 656.4 381 84.0
Haze_03731 Corylus avellana HOM05D005052 ORTHO05D006226 1.6e-186 656.4 419 78.3
BcaC04g23113 Brassica carinata HOM05D005052 ORTHO05D006226 2.1e-186 656.0 411 80.0
C09p12030 Brassica napus HOM05D005052 ORTHO05D006226 2.1e-186 656.0 411 80.0
BolC9t54093H Brassica oleracea HOM05D005052 ORTHO05D006226 2.1e-186 656.0 411 80.0
PGR102G0465 Punica granatum HOM05D005052 ORTHO05D006226 2.7e-186 655.6 441 75.7
FvH4_1g11430 Fragaria vesca HOM05D005052 ORTHO05D006226 3.5e-186 655.2 404 80.4
Phvul.002G106700 Phaseolus vulgaris HOM05D005052 ORTHO05D006226 4.6e-186 654.8 440 75.2
Nn1g06262 Nelumbo nucifera HOM05D005052 ORTHO05D006226 1.0e-185 653.7 396 81.6
FAN19G0738 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.8e-185 652.9 404 80.7
Lj2g0011110 Lotus japonicus HOM05D005052 ORTHO05D006226 2.3e-185 652.5 442 75.6
Medtr5g022580 Medicago truncatula HOM05D005052 ORTHO05D006226 2.3e-185 652.5 386 81.6
Hund16503 Selenicereus undatus HOM05D005052 ORTHO05D006226 5.1e-185 651.4 399 81.5
PSO675G6089 Papaver somniferum HOM05D005052 ORTHO05D006226 8.7e-185 650.6 409 79.0
TPR.G10542 Trifolium pratense HOM05D005052 ORTHO05D006226 1.1e-184 650.2 383 81.5
Lalb_Chr09g0321611 Lupinus albus HOM05D005052 ORTHO05D006226 1.9e-184 649.4 388 83.0
TWI09G1579 Tripterygium wilfordii HOM05D005052 ORTHO05D006226 4.3e-184 648.3 409 78.2
Psat2g153160 Pisum sativum HOM05D005052 ORTHO05D006226 7.4e-184 647.5 386 81.1
AUR62003338 Chenopodium quinoa HOM05D005052 ORTHO05D006226 9.6e-184 647.1 410 79.3
FAN26G3360 Fragaria x ananassa HOM05D005052 ORTHO05D006226 9.6e-184 647.1 419 77.6
FAN23G2381 Fragaria x ananassa HOM05D005052 ORTHO05D006226 1.3e-183 646.7 407 79.9
Gorai.007G192400 Gossypium raimondii HOM05D005052 ORTHO05D006226 2.8e-183 645.6 406 79.3
Lalb_Chr05g0212261 Lupinus albus HOM05D005052 ORTHO05D006226 2.8e-183 645.6 443 74.9
DCAR_022909 Daucus carota HOM05D005052 ORTHO05D006226 3.7e-183 645.2 396 82.3
MBI05_g23388_MAGBIO Magnolia biondii HOM05D005052 ORTHO05D006226 8.2e-183 644.0 454 73.1
ATR0712G043 Amborella trichopoda HOM05D005052 ORTHO05D006226 1.4e-182 643.3 447 72.9
AUR62029500 Chenopodium quinoa HOM05D005052 ORTHO05D006226 2.4e-182 642.5 413 78.5
TAR381G1626 Trochodendron aralioides HOM05D005052 ORTHO05D006226 5.3e-182 641.3 416 77.4
Os09g0539100 Oryza sativa ssp. japonica HOM05D005052 ORTHO05D006226 5.8e-181 637.9 382 81.9
Gohir.D11G180500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 2.2e-180 636.0 378 82.8
Zm00001eb103800 Zea mays HOM05D005052 ORTHO05D006226 3.8e-180 635.2 412 77.4
Aqoxy4G02022 Aquilegia oxysepala HOM05D005052 ORTHO05D006226 2.3e-177 625.9 414 76.3
HPP92_025914 Vanilla planifolia HOM05D005052 ORTHO05D006226 3.0e-177 625.5 392 77.6
Gohir.A11G173500 Gossypium hirsutum HOM05D005052 ORTHO05D006226 6.7e-177 624.4 388 80.2
HPP92_025909 Vanilla planifolia HOM05D005052 ORTHO05D006226 6.7e-177 624.4 392 77.6
Pp3c13_24150 Physcomitrium patens HOM05D005052 ORTHO05D006226 1.2e-170 603.6 452 67.5
Ciclev10025711m.g Citrus clementina HOM05D005052 ORTHO05D006226 2.7e-170 602.4 388 78.9
CSS0012363 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 4.8e-167 591.7 328 87.5
Mapoly0031s0094 Marchantia polymorpha HOM05D005052 ORTHO05D006226 1.8e-166 589.7 388 73.7
AagrBONN_evm.TU.Sc2ySwM_340.387 Anthoceros agrestis HOM05D005052 ORTHO05D006226 2.6e-165 585.9 386 73.6
SMO228G0049 Selaginella moellendorffii HOM05D005052 ORTHO05D006226 1.4e-163 580.1 364 75.8
Actinidia28717 Actinidia chinensis HOM05D005052 ORTHO05D006226 1.4e-158 563.5 447 68.0
Zm00001eb331970 Zea mays HOM05D005052 ORTHO05D006226 7.0e-158 561.2 409 72.4
CBR_g10969 Chara braunii HOM05D005052 ORTHO05D006226 2.9e-156 555.8 387 70.8
Lsat_1_v5_gn_3_125660 Lactuca sativa HOM05D005052 ORTHO05D006226 8.5e-156 554.3 419 69.9
DCAR_004732 Daucus carota HOM05D005052 ORTHO05D006226 1.9e-155 553.1 397 71.3
Actinidia17421 Actinidia chinensis HOM05D005052 ORTHO05D006226 3.6e-146 522.3 287 88.2
Cre08.g368950 Chlamydomonas reinhardtii HOM05D005052 ORTHO05D006226 2.3e-145 519.6 393 66.2
EL10Ac6g15523 Beta vulgaris HOM05D005052 ORTHO05D006226 4.5e-141 505.4 467 59.1
MCO01G625 Micromonas commoda HOM05D005052 ORTHO05D006226 4.5e-141 505.4 414 60.4
CDE04G1415 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.4e-137 493.8 287 81.9
Hma1.2p1_0315F.1_g122330 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 1.3e-132 477.2 376 67.0
Manes.02G107200 Manihot esculenta HOM05D005052 ORTHO05D006226 1.3e-132 477.2 308 78.2
PRCOL_00000314 Prasinoderma coloniale HOM05D005052 ORTHO05D006226 1.4e-129 467.2 363 62.0
Ah.03g149130 Amaranthus hybridus HOM05D005052 ORTHO05D006226 4.0e-129 465.7 266 85.7
SEGI_14262 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.9e-119 433.0 283 73.9
Dinv33661 Davidia involucrata HOM05D005052 ORTHO05D006226 4.3e-115 419.1 233 88.0
Hma1.2p1_2620F.1_g325580 Hydrangea macrophylla HOM05D005052 ORTHO05D006226 3.7e-111 406.0 450 53.3
CDE02G2775 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 1.6e-109 400.6 314 64.6
SEGI_08539 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 8.4e-95 351.7 224 74.6
CDE02G1558 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 4.2e-86 322.8 256 64.8
SGA_v2.0_scaffold273G46395 Striga asiatica HOM05D005052 ORTHO05D006226 1.1e-81 308.1 243 63.8
Lsat_1_v5_gn_0_46241 Lactuca sativa HOM05D005052 ORTHO05D006226 2.3e-76 290.4 299 48.2
unitig_699.g19702 Utricularia gibba HOM05D005052 ORTHO05D006226 1.2e-72 278.1 161 85.1
TPR.G6592 Trifolium pratense HOM05D005052 ORTHO05D006226 1.0e-71 275.0 273 56.4
RcHm_v2.0_Chr2g0099011 Rosa chinensis HOM05D005052 ORTHO05D006226 1.3e-71 274.6 246 58.9
Haze_27270 Corylus avellana HOM05D005052 ORTHO05D006226 1.9e-67 260.8 355 43.4
Dinv33662 Davidia involucrata HOM05D005052 ORTHO05D006226 1.1e-57 228.4 208 59.1
Cfa024476 Carpinus fangiana HOM05D003566 ORTHO05D126353 1.4e-57 228.0 346 43.4
unitig_699.g19703 Utricularia gibba HOM05D005052 ORTHO05D006226 4.6e-53 213.0 176 66.5
Rhsim07G0143100 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.6e-45 186.8 184 59.2
SEGI_40904 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 2.0e-43 181.0 113 77.0
Ah.03g149140 Amaranthus hybridus HOM05D000441 ORTHO05D000340 3.6e-29 133.7 77 83.1
SEGI_17140 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.4e-27 126.7 83 72.3
SEGI_34573 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 4.4e-27 126.7 83 72.3
MD02G1126200 Malus domestica HOM05D005052 ORTHO05D006226 2.0e-24 117.9 129 51.9
MD14G1099300 Malus domestica HOM05D005052 ORTHO05D006226 2.0e-24 117.9 129 51.9
Rhsim07G0135500 Rhododendron simsii HOM05D005052 ORTHO05D006226 3.6e-21 107.1 71 71.8
DCAR_004721 Daucus carota HOM05D005052 ORTHO05D006226 2.3e-20 104.4 113 52.2
CDE04G1456 Ceratophyllum demersum HOM05D005052 ORTHO05D006226 6.8e-20 102.8 83 60.2
SEGI_22853 Sequoiadendron giganteum HOM05D005052 ORTHO05D006226 3.4e-19 100.5 69 68.1
Rhsim07G0135600 Rhododendron simsii HOM05D005052 ORTHO05D339393 5.9e-08 63.2 37 73.0
CSS0040013 Camellia sinensis var. sinensis HOM05D005052 ORTHO05D006226 7.8e-08 62.8 112 42.9


User provided reference genes

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