Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1271.18 Capsicum annuum HOM05D012079 ORTHO05D011565 1.7e-60 235.7 110 100.0
CAN.G2911.1 Capsicum annuum HOM05D012079 ORTHO05D011565 1.7e-60 235.7 110 100.0
CAN.G1271.22 Capsicum annuum HOM05D012079 ORTHO05D011565 6.3e-52 207.2 102 95.1
CAN.G416.52 Capsicum annuum HOM05D012079 ORTHO05D011565 5.6e-40 167.5 110 73.6
PGSC0003DMG400005156 Solanum tuberosum HOM05D012079 ORTHO05D011565 4.4e-29 131.3 103 65.0
Peaxi162Scf00205g01428 Petunia axillaris HOM05D012079 ORTHO05D011565 1.0e-17 93.6 99 47.5
PGSC0003DMG400034990 Solanum tuberosum HOM05D013992 ORTHO05D011565 1.5e-13 79.7 110 40.9
Nitab4.5_0000259g0150 Nicotiana tabacum HOM05D012079 ORTHO05D011565 2.0e-13 79.3 112 44.6
CAN.G588.77 Capsicum annuum HOM05D013992 ORTHO05D011565 2.6e-13 79.0 111 41.4
Peaxi162Scf00205g00134 Petunia axillaris HOM05D012079 ORTHO05D011565 2.6e-13 79.0 99 47.5
PGSC0003DMG400018170 Solanum tuberosum HOM05D013992 ORTHO05D011565 4.4e-13 78.2 104 44.2
PGSC0003DMG400045879 Solanum tuberosum HOM05D013992 ORTHO05D011565 1.7e-12 76.3 109 45.9
Ah.14g085690 Amaranthus hybridus HOM05D000007 ORTHO05D000017 7.3e-08 60.8 97 30.9
Medtr7g052150 Medicago truncatula HOM05D000007 ORTHO05D000017 1.6e-07 59.7 63 46.0
PGR102G1489 Punica granatum HOM05D000171 ORTHO05D000101 2.1e-07 59.3 52 48.1
Haze_12718 Corylus avellana HOM05D000007 ORTHO05D000039 2.8e-07 58.9 78 43.6
RcHm_v2.0_Chr1g0344471 Rosa chinensis HOM05D000007 ORTHO05D000039 2.8e-07 58.9 111 29.7
CARHR116780 Cardamine hirsuta HOM05D000171 ORTHO05D000101 3.6e-07 58.5 78 39.7
PGSC0003DMG400025404 Solanum tuberosum HOM05D000007 ORTHO05D000017 3.6e-07 58.5 104 31.7
Psat0s2411g0160 Pisum sativum HOM05D000007 ORTHO05D000017 4.8e-07 58.2 56 41.1
PGSC0003DMG400046279 Solanum tuberosum HOM05D013992 ORTHO05D011565 4.8e-07 58.2 100 42.0
Ca_06553_v3 Cicer arietinum L. HOM05D000007 ORTHO05D000017 6.2e-07 57.8 52 46.2
RcHm_v2.0_Chr2g0154621 Rosa chinensis HOM05D000007 ORTHO05D011565 6.2e-07 57.8 79 34.2
AL4G35160 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 8.1e-07 57.4 68 41.2
Psat7g250160 Pisum sativum HOM05D000007 ORTHO05D000017 1.1e-06 57.0 55 45.5
vmacro00492 Vaccinium macrocarpon HOM05D000007 ORTHO05D000017 1.1e-06 57.0 69 37.7
CARHR036630 Cardamine hirsuta HOM05D000171 ORTHO05D000101 1.4e-06 56.6 106 33.0
Migut.N00596 Erythranthe guttata HOM05D000007 ORTHO05D005385 1.4e-06 56.6 58 48.3
Medtr1g015740 Medicago truncatula HOM05D000007 ORTHO05D000017 1.4e-06 56.6 48 45.8
Psat7g250120 Pisum sativum HOM05D000007 ORTHO05D000017 1.4e-06 56.6 46 52.2
QL02p100144 Quercus lobata HOM05D000007 ORTHO05D000017 1.4e-06 56.6 50 52.0
Atru.chr3.1786 Acer truncatum HOM05D000007 ORTHO05D000017 1.8e-06 56.2 71 43.7
Psat0s2411g0040 Pisum sativum HOM05D000007 ORTHO05D000017 1.8e-06 56.2 56 39.3
Psat0s2411g0240 Pisum sativum HOM05D000007 ORTHO05D000017 1.8e-06 56.2 56 39.3
Psat1g005680 Pisum sativum HOM05D000007 ORTHO05D000017 1.8e-06 56.2 56 39.3
SalBow7G0086 Salvia bowleyana HOM05D000007 ORTHO05D000017 1.8e-06 56.2 61 41.0
Actinidia37850 Actinidia chinensis HOM05D000007 ORTHO05D000039 2.4e-06 55.8 85 37.6
EL10Ac8g18631 Beta vulgaris HOM05D000007 ORTHO05D000017 2.4e-06 55.8 94 36.2
Sopen09g034550 Solanum pennellii HOM05D000007 ORTHO05D000017 2.4e-06 55.8 46 52.2
QL04p019179 Quercus lobata HOM05D000007 ORTHO05D000039 3.1e-06 55.5 71 43.7
QL04p037076 Quercus lobata HOM05D000007 ORTHO05D000039 3.1e-06 55.5 41 58.5
arahy.Tifrunner.gnm1.ann1.23JTWI Arachis hypogaea HOM05D000007 ORTHO05D000017 4.0e-06 55.1 103 35.9
COL.COLO4_14882 Corchorus olitorius HOM05D000007 ORTHO05D000039 4.0e-06 55.1 79 38.0
Dinv16551 Davidia involucrata HOM05D000171 ORTHO05D000101 4.0e-06 55.1 50 46.0
Medtr1g088120 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-06 55.1 49 46.9
Medtr4g013175 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-06 55.1 49 46.9
Medtr4g013185 Medicago truncatula HOM05D000007 ORTHO05D000017 4.0e-06 55.1 49 49.0
Nitab4.5_0005858g0100 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.0e-06 55.1 62 38.7
Psat7g250080 Pisum sativum HOM05D000007 ORTHO05D000017 4.0e-06 55.1 51 43.1
QL04p019206 Quercus lobata HOM05D000007 ORTHO05D000039 4.0e-06 55.1 71 43.7
SalBow1G1428 Salvia bowleyana HOM05D000007 ORTHO05D000017 4.0e-06 55.1 61 39.3
vmacro06021 Vaccinium macrocarpon HOM05D000007 ORTHO05D000039 4.0e-06 55.1 85 37.6
Medtr0242s0040 Medicago truncatula HOM05D000007 ORTHO05D000017 5.3e-06 54.7 80 36.2
Medtr0242s0060 Medicago truncatula HOM05D000007 ORTHO05D000017 5.3e-06 54.7 80 36.2
Medtr5g070130 Medicago truncatula HOM05D000007 ORTHO05D000017 5.3e-06 54.7 99 36.4
Medtr5g096710 Medicago truncatula HOM05D000007 ORTHO05D000017 5.3e-06 54.7 56 42.9
Medtr7g077970 Medicago truncatula HOM05D000007 ORTHO05D000017 5.3e-06 54.7 71 42.3
QL04p019108 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-06 54.7 76 39.5
QL04p019471 Quercus lobata HOM05D000007 ORTHO05D000039 5.3e-06 54.7 83 34.9
SalBow1G8633 Salvia bowleyana HOM05D000007 ORTHO05D000017 5.3e-06 54.7 61 39.3
Atru.chr1.2430 Acer truncatum HOM05D000007 ORTHO05D000017 6.9e-06 54.3 69 46.4
BolC4t22474H Brassica oleracea HOM05D000171 ORTHO05D000101 6.9e-06 54.3 67 46.3
Migut.G00050 Erythranthe guttata HOM05D000007 ORTHO05D000017 6.9e-06 54.3 66 39.4
FAN02G2443 Fragaria x ananassa HOM05D003032 ORTHO05D000039 6.9e-06 54.3 57 43.9
Medtr0128s0070 Medicago truncatula HOM05D000007 ORTHO05D000017 6.9e-06 54.3 49 44.9
Medtr5g068040 Medicago truncatula HOM05D000007 ORTHO05D000017 6.9e-06 54.3 64 40.6
Nitab4.5_0000519g0140 Nicotiana tabacum HOM05D000007 ORTHO05D000017 6.9e-06 54.3 69 39.1
AUR62043627 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.0e-06 53.9 58 44.8
AUR62043629 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.0e-06 53.9 58 44.8
AUR62043631 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.0e-06 53.9 58 44.8
AUR62043633 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.0e-06 53.9 58 44.8
AUR62043635 Chenopodium quinoa HOM05D000007 ORTHO05D000017 9.0e-06 53.9 58 44.8
Migut.N00363 Erythranthe guttata HOM05D000007 ORTHO05D000017 9.0e-06 53.9 71 36.6
Phvul.003G163000 Phaseolus vulgaris HOM05D000007 ORTHO05D000017 9.0e-06 53.9 68 38.2
QL04p019213 Quercus lobata HOM05D000007 ORTHO05D000039 9.0e-06 53.9 44 50.0
SalBow1G0054 Salvia bowleyana HOM05D000007 ORTHO05D000017 9.0e-06 53.9 60 38.3
VMungo0464G0235 Vigna mungo HOM05D000007 ORTHO05D000017 9.0e-06 53.9 45 48.9
VMungo0647G0008 Vigna mungo HOM05D040773 ORTHO05D023177 9.0e-06 53.9 103 32.0


User provided reference genes

Program Settings