Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1271.12 Capsicum annuum HOM05D005344 ORTHO05D006444 1.6e-67 259.2 129 100.0
PGSC0003DMG400003723 Solanum tuberosum HOM05D005344 ORTHO05D006444 1.1e-60 236.5 119 95.8
Nitab4.5_0001988g0010 Nicotiana tabacum HOM05D005344 ORTHO05D006444 3.3e-60 235.0 119 94.1
Solyc04g081220.3 Solanum lycopersicum HOM05D005344 ORTHO05D006444 4.4e-60 234.6 119 94.1
Sopen04g034830 Solanum pennellii HOM05D005344 ORTHO05D006444 4.4e-60 234.6 119 94.1
Peaxi162Scf00287g01714 Petunia axillaris HOM05D005344 ORTHO05D006444 1.7e-59 232.6 119 95.0
Nitab4.5_0005425g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 6.3e-59 230.7 120 91.7
Nitab4.5_0006992g0020 Nicotiana tabacum HOM05D005344 ORTHO05D006444 1.4e-58 229.6 119 92.4
SGA_v2.0_scaffold47G17494 Striga asiatica HOM05D005344 ORTHO05D006444 5.9e-57 224.2 119 89.1
SalBow8G2912 Salvia bowleyana HOM05D005344 ORTHO05D006444 4.7e-54 214.5 120 85.0
Gorai.009G225000 Gossypium raimondii HOM05D005344 ORTHO05D006444 1.0e-53 213.4 127 82.7
Migut.N03145 Erythranthe guttata HOM05D005344 ORTHO05D006444 1.4e-53 213.0 119 84.0
Oeu031192.1 Olea europaea HOM05D005344 ORTHO05D006444 1.4e-53 213.0 120 83.3
Gohir.A05G214800 Gossypium hirsutum HOM05D005344 ORTHO05D006444 3.9e-53 211.5 119 85.7
Oeu024518.1 Olea europaea HOM05D005344 ORTHO05D006444 3.9e-53 211.5 120 83.3
Cc10_g01930 Coffea canephora HOM05D005344 ORTHO05D006444 5.2e-53 211.1 119 84.9
Gohir.D05G218100 Gossypium hirsutum HOM05D005344 ORTHO05D006444 5.2e-53 211.1 119 85.7
CsaV3_3G045650 Cucumis sativus L. HOM05D005344 ORTHO05D006444 8.8e-53 210.3 119 84.9
Duzib093G0333 Durio zibethinus HOM05D005344 ORTHO05D006444 1.1e-52 209.9 119 84.9
Cpa.g.sc116.53 Carica papaya HOM05D005344 ORTHO05D006444 3.3e-52 208.4 119 84.9
COL.COLO4_32025 Corchorus olitorius HOM05D005344 ORTHO05D006444 3.3e-52 208.4 120 84.2
Thecc.08G040900 Theobroma cacao HOM05D005344 ORTHO05D006444 7.4e-52 207.2 119 84.0
arahy.Tifrunner.gnm1.ann1.0YI8WX Arachis hypogaea HOM05D005344 ORTHO05D006444 9.7e-52 206.8 125 80.0
TWI75G1031 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 1.3e-51 206.5 119 83.2
ClCG05G018520 Citrullus lanatus HOM05D005344 ORTHO05D006444 1.7e-51 206.1 120 82.5
MSTRG.24255 Avicennia marina HOM05D005344 ORTHO05D006444 2.2e-51 205.7 119 82.4
PGR102G3231 Punica granatum HOM05D005344 ORTHO05D006444 2.8e-51 205.3 119 84.0
arahy.Tifrunner.gnm1.ann1.Y8FRL8 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.7e-51 204.9 119 81.5
TWI31G0971 Tripterygium wilfordii HOM05D005344 ORTHO05D006444 4.8e-51 204.5 119 81.5
TAR381G0484 Trochodendron aralioides HOM05D005344 ORTHO05D006444 4.8e-51 204.5 119 83.2
unitig_899.g15276 Utricularia gibba HOM05D005344 ORTHO05D006444 4.8e-51 204.5 125 80.0
PGR083G0019 Punica granatum HOM05D005344 ORTHO05D006444 6.3e-51 204.1 119 83.2
Sabra01G0173600 Salix brachista HOM05D005344 ORTHO05D006444 6.3e-51 204.1 126 80.2
FAN20G2570 Fragaria x ananassa HOM05D005344 ORTHO05D006444 8.2e-51 203.8 120 81.7
QL02p011006 Quercus lobata HOM05D005344 ORTHO05D006444 8.2e-51 203.8 119 81.5
FAN15G2308 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.4e-50 203.0 119 82.4
CSS0046670 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 1.8e-50 202.6 120 80.0
Eucgr.F01631 Eucalyptus grandis HOM05D005344 ORTHO05D006444 1.8e-50 202.6 119 82.4
MD07G1075400 Malus domestica HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 83.2
Potri.012G106900 Populus trichocarpa HOM05D005344 ORTHO05D006444 2.4e-50 202.2 120 83.3
Sed0018322 Sechium edule HOM05D005344 ORTHO05D006444 2.4e-50 202.2 119 82.4
arahy.Tifrunner.gnm1.ann1.NGB00B Arachis hypogaea HOM05D005344 ORTHO05D006444 3.1e-50 201.8 126 78.6
arahy.Tifrunner.gnm1.ann1.2J2T1L Arachis hypogaea HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 81.5
MELO3C003771.2 Cucumis melo HOM05D005344 ORTHO05D006444 4.1e-50 201.4 124 77.4
MD02G1241500 Malus domestica HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 83.2
Manes.18G015800 Manihot esculenta HOM05D005344 ORTHO05D006444 4.1e-50 201.4 119 81.5
Dinv39499 Davidia involucrata HOM05D005344 ORTHO05D006444 5.3e-50 201.1 119 82.4
vmacro04337 Vaccinium macrocarpon HOM05D005344 ORTHO05D006444 7.0e-50 200.7 119 81.5
Ciclev10002838m.g Citrus clementina HOM05D005344 ORTHO05D006444 1.2e-49 199.9 119 79.0
Potri.004G228566 Populus trichocarpa HOM05D005344 ORTHO05D006444 1.6e-49 199.5 119 82.4
GSVIVG01009861001 Vitis vinifera HOM05D005344 ORTHO05D006444 1.6e-49 199.5 119 81.5
DCAR_013854 Daucus carota HOM05D005344 ORTHO05D006444 2.0e-49 199.1 120 80.0
ECA236G2959 Erigeron canadensis HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 80.7
Rhsim07G0245900 Rhododendron simsii HOM05D005344 ORTHO05D006444 2.0e-49 199.1 119 79.8
CiPaw.08G064300 Carya illinoinensis HOM05D005344 ORTHO05D006444 2.6e-49 198.7 119 80.7
Prupe.1G368800 Prunus persica HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 81.5
QL03p018250 Quercus lobata HOM05D005344 ORTHO05D006444 3.5e-49 198.4 119 79.0
CSS0034614 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 80.7
Prupe.1G182400 Prunus persica HOM05D005344 ORTHO05D006444 4.5e-49 198.0 119 80.7
Atru.chr12.1135 Acer truncatum HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 78.2
CANSAT56G2754 Cannabis sativa HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 79.0
Lsat_1_v5_gn_7_29421 Lactuca sativa HOM05D005344 ORTHO05D006444 5.9e-49 197.6 119 80.7
Cfa013923 Carpinus fangiana HOM05D005344 ORTHO05D006444 1.0e-48 196.8 118 80.5
Haze_22604 Corylus avellana HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 80.7
Nn6g32300 Nelumbo nucifera HOM05D005344 ORTHO05D006444 1.0e-48 196.8 119 80.7
FvH4_2g38800 Fragaria vesca HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 79.0
HanXRQChr15g0480961 Helianthus annuus HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 80.7
RcHm_v2.0_Chr6g0302491 Rosa chinensis HOM05D005344 ORTHO05D006444 1.3e-48 196.4 119 79.8
Aqoxy6G02944 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 2.2e-48 195.7 120 80.0
Aa31LG9G16480 Aethionema arabicum HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 77.3
A04p12340 Brassica napus HOM05D005344 ORTHO05D006444 2.9e-48 195.3 120 77.5
C04p46010 Brassica napus HOM05D005344 ORTHO05D006444 2.9e-48 195.3 120 77.5
HanXRQChr04g0119171 Helianthus annuus HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 79.8
Sp7g02390 Schrenkiella parvula HOM05D005344 ORTHO05D006444 2.9e-48 195.3 119 78.2
CANSAT56G2098 Cannabis sativa HOM05D005344 ORTHO05D006444 3.8e-48 194.9 119 78.2
AL7G50710 Arabidopsis lyrata HOM05D005344 ORTHO05D006444 5.0e-48 194.5 119 77.3
Carub.0007s3634 Capsella rubella HOM05D005344 ORTHO05D006444 6.5e-48 194.1 119 78.2
AT5G39600 Arabidopsis thaliana HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 78.2
BcaB06g27347 Brassica carinata HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 77.3
BolC4t26183H Brassica oleracea HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 77.3
BraA04t16898Z Brassica rapa HOM05D005344 ORTHO05D006444 8.5e-48 193.7 119 77.3
Sc02g0008440 Simmondsia chinensis HOM05D005344 ORTHO05D006444 1.1e-47 193.4 119 76.5
Actinidia15404 Actinidia chinensis HOM05D005344 ORTHO05D006444 2.5e-47 192.2 119 75.6
CDE05G1229 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 76.5
CDE05G1331 Ceratophyllum demersum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 76.5
Thhalv10027992m.g Eutrema salsugineum HOM05D005344 ORTHO05D006444 3.2e-47 191.8 119 76.5
Psat5g014400 Pisum sativum HOM05D005344 ORTHO05D006444 4.2e-47 191.4 119 76.5
PSO541G4852 Papaver somniferum HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 77.3
PSO675G5369 Papaver somniferum HOM05D005344 ORTHO05D006444 9.4e-47 190.3 119 77.3
AUR62035436 Chenopodium quinoa HOM05D005344 ORTHO05D006444 2.1e-46 189.1 120 74.2
Ca_16814_v3 Cicer arietinum L. HOM05D005344 ORTHO05D006444 2.1e-46 189.1 119 76.5
Medtr3g113260 Medicago truncatula HOM05D005344 ORTHO05D006444 2.7e-46 188.7 119 75.6
Lj1g0020845 Lotus japonicus HOM05D005344 ORTHO05D006444 3.6e-46 188.3 119 77.3
TAR625G0974 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.6e-46 188.3 119 74.8
AUR62035723 Chenopodium quinoa HOM05D005344 ORTHO05D006444 4.7e-46 188.0 120 73.3
TPR.G5807 Trifolium pratense HOM05D005344 ORTHO05D006444 4.7e-46 188.0 120 76.7
EL10Ac1g02258 Beta vulgaris HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 73.9
CARHR262690 Cardamine hirsuta HOM05D005344 ORTHO05D006444 6.1e-46 187.6 119 75.6
Lalb_Chr11g0061991 Lupinus albus HOM05D005344 ORTHO05D006444 8.0e-46 187.2 119 76.5
TPR.G38895 Trifolium pratense HOM05D005344 ORTHO05D006444 1.4e-45 186.4 119 74.8
Medtr1g013440 Medicago truncatula HOM05D005344 ORTHO05D006444 2.3e-45 185.7 119 74.8
CSS0046173 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 3.0e-45 185.3 109 79.8
Glyma.06G025600 Glycine max HOM05D005344 ORTHO05D006444 4.0e-45 184.9 113 77.0
Aqoxy6G02319 Aquilegia oxysepala HOM05D005344 ORTHO05D006444 5.2e-45 184.5 115 76.5
SHI08085 Sapria himalayana HOM05D005344 ORTHO05D006444 5.2e-45 184.5 122 73.0
HPP92_014936 Vanilla planifolia HOM05D005344 ORTHO05D006444 1.2e-44 183.3 119 74.8
Glyma.04G025800 Glycine max HOM05D005344 ORTHO05D006444 2.0e-44 182.6 119 73.9
TAR625G1223 Trochodendron aralioides HOM05D005344 ORTHO05D006444 3.3e-44 181.8 113 76.1
FAN26G0652 Fragaria x ananassa HOM05D005344 ORTHO05D006444 5.7e-44 181.0 120 73.3
Phvul.009G015400 Phaseolus vulgaris HOM05D005344 ORTHO05D006444 7.5e-44 180.6 113 77.0
VMungo1309G2030 Vigna mungo HOM05D005344 ORTHO05D006444 7.5e-44 180.6 113 77.0
FvH4_1g25620 Fragaria vesca HOM05D005344 ORTHO05D006444 1.1e-42 176.8 119 73.1
FAN19G0275 Fragaria x ananassa HOM05D005344 ORTHO05D006444 1.1e-42 176.8 126 70.6
FAN23G0736 Fragaria x ananassa HOM05D005344 ORTHO05D006444 3.1e-42 175.3 115 74.8
Manes.09G054100 Manihot esculenta HOM05D005344 ORTHO05D006444 1.7e-40 169.5 114 70.2
Atru.chr4.1572 Acer truncatum HOM05D005344 ORTHO05D006444 1.1e-39 166.8 113 72.6
ATR0665G498 Amborella trichopoda HOM05D005344 ORTHO05D006444 7.2e-39 164.1 117 67.5
MSTRG.22330 Avicennia marina HOM05D005344 ORTHO05D006444 1.2e-38 163.3 98 78.6
arahy.Tifrunner.gnm1.ann1.3U1GZ3 Arachis hypogaea HOM05D005344 ORTHO05D006444 3.0e-37 158.7 96 77.1
arahy.Tifrunner.gnm1.ann1.IGJ8TG Arachis hypogaea HOM05D005344 ORTHO05D006444 1.2e-36 156.8 95 76.8
MBI05_g26505_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 3.7e-35 151.8 97 75.3
arahy.Tifrunner.gnm1.ann1.Y1NSFR Arachis hypogaea HOM05D005344 ORTHO05D006444 7.7e-33 144.1 85 78.8
Pp3c9_11020 Physcomitrium patens HOM05D005344 ORTHO05D006444 7.7e-33 144.1 112 60.7
arahy.Tifrunner.gnm1.ann1.2QY3VR Arachis hypogaea HOM05D005344 ORTHO05D006444 1.3e-32 143.3 94 74.5
arahy.Tifrunner.gnm1.ann1.H9RICG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.3e-32 142.5 84 78.6
arahy.Tifrunner.gnm1.ann1.ZTTZ43 Arachis hypogaea HOM05D005344 ORTHO05D006444 6.5e-32 141.0 85 77.6
Mapoly0151s0020 Marchantia polymorpha HOM05D005344 ORTHO05D006444 1.1e-31 140.2 113 57.5
Gorai.005G111500 Gossypium raimondii HOM05D005344 ORTHO05D006444 2.5e-31 139.0 94 71.3
Os02g0282100 Oryza sativa ssp. japonica HOM05D005344 ORTHO05D006444 4.4e-28 128.3 134 49.3
AagrBONN_evm.TU.Sc2ySwM_117.1156 Anthoceros agrestis HOM05D005344 ORTHO05D006444 5.7e-28 127.9 99 58.6
Hund00462 Selenicereus undatus HOM05D005344 ORTHO05D006444 9.8e-28 127.1 113 53.1
ATR0605G109 Amborella trichopoda HOM05D005344 ORTHO05D006444 1.7e-27 126.3 92 70.7
Zm00001eb237200 Zea mays HOM05D005344 ORTHO05D006444 4.5e-25 118.2 132 47.0
MBI07_g11722_MAGBIO Magnolia biondii HOM05D005344 ORTHO05D006444 2.8e-22 109.0 88 63.6
arahy.Tifrunner.gnm1.ann1.3DP3ZG Arachis hypogaea HOM05D005344 ORTHO05D006444 2.5e-15 85.9 51 82.4
CSS0035037 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 5.0e-08 61.6 39 74.4
CSS0040415 Camellia sinensis var. sinensis HOM05D005344 ORTHO05D006444 8.6e-08 60.8 40 67.5


User provided reference genes

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