Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1268.9 Capsicum annuum HOM05D003877 ORTHO05D004647 8.1e-296 1019.6 503 100.0
Sopen05g031010 Solanum pennellii HOM05D003877 ORTHO05D004647 2.0e-270 935.3 503 90.3
Nitab4.5_0003391g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.0e-250 869.8 503 84.9
Nitab4.5_0000789g0120 Nicotiana tabacum HOM05D003877 ORTHO05D004647 1.2e-241 839.7 478 86.2
Peaxi162Scf01149g00319 Petunia axillaris HOM05D003877 ORTHO05D004647 8.3e-240 833.6 460 85.7
PGSC0003DMG400027120 Solanum tuberosum HOM05D003877 ORTHO05D004647 1.4e-231 806.2 434 90.6
PGSC0003DMG400030038 Solanum tuberosum HOM05D003877 ORTHO05D004647 6.8e-226 787.3 503 76.5
Nitab4.5_0000058g0130 Nicotiana tabacum HOM05D003877 ORTHO05D004647 8.9e-226 786.9 525 73.5
Nitab4.5_0005049g0030 Nicotiana tabacum HOM05D003877 ORTHO05D004647 5.7e-225 784.3 525 73.5
Peaxi162Scf00284g00528 Petunia axillaris HOM05D003877 ORTHO05D004647 7.8e-222 773.9 475 78.9
Dinv10589 Davidia involucrata HOM05D003877 ORTHO05D004647 8.0e-219 763.8 502 72.9
Solyc06g050990.3 Solanum lycopersicum HOM05D003877 ORTHO05D004647 1.4e-215 753.1 468 78.0
Sopen06g016790 Solanum pennellii HOM05D003877 ORTHO05D004647 1.9e-215 752.7 468 78.2
CSS0042673 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.6e-213 743.8 504 71.8
MD01G1157500 Malus domestica HOM05D003877 ORTHO05D004647 1.4e-207 726.5 481 70.7
Cc02_g06060 Coffea canephora HOM05D003877 ORTHO05D004647 4.1e-207 724.9 524 67.0
vmacro17690 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 7.1e-207 724.2 493 69.4
Actinidia29719 Actinidia chinensis HOM05D003877 ORTHO05D004647 1.2e-206 723.4 489 70.6
Ciclev10031326m.g Citrus clementina HOM05D003877 ORTHO05D004647 6.0e-206 721.1 491 69.2
TAR623G0028 Trochodendron aralioides HOM05D003877 ORTHO05D004647 6.0e-206 721.1 475 71.4
Lj6g0018000 Lotus japonicus HOM05D003877 ORTHO05D004647 4.3e-204 714.9 495 68.5
GSVIVG01032758001 Vitis vinifera HOM05D003877 ORTHO05D004647 1.1e-202 710.3 483 69.8
Glyma.18G024700 Glycine max HOM05D003877 ORTHO05D004647 1.8e-202 709.5 490 68.6
DCAR_011841 Daucus carota HOM05D003877 ORTHO05D004647 2.3e-202 709.1 494 68.8
Medtr3g071580 Medicago truncatula HOM05D003877 ORTHO05D004647 3.1e-202 708.8 490 69.4
Ca_15152_v3 Cicer arietinum L. HOM05D003877 ORTHO05D004647 4.0e-202 708.4 476 70.4
Manes.10G009000 Manihot esculenta HOM05D003877 ORTHO05D004647 5.2e-202 708.0 503 68.2
TWI73G0349 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 1.2e-201 706.8 489 69.1
Rhsim03G0146600 Rhododendron simsii HOM05D003877 ORTHO05D004647 1.5e-201 706.4 480 69.8
Nn7g35848 Nelumbo nucifera HOM05D003877 ORTHO05D004647 9.9e-201 703.7 474 70.0
Thecc.10G011300 Theobroma cacao HOM05D003877 ORTHO05D004647 1.3e-200 703.4 458 71.8
TAR633G0464 Trochodendron aralioides HOM05D003877 ORTHO05D004647 1.3e-200 703.4 463 71.3
FAN01G0819 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-200 703.0 478 67.4
FAN10G2809 Fragaria x ananassa HOM05D003877 ORTHO05D004647 1.7e-200 703.0 478 67.4
Oeu056656.1 Olea europaea HOM05D003877 ORTHO05D004647 1.7e-200 703.0 496 68.8
GSVIVG01032757001 Vitis vinifera HOM05D003877 ORTHO05D004647 2.2e-200 702.6 479 69.3
FvH4_7g25060 Fragaria vesca HOM05D003877 ORTHO05D004647 8.4e-200 700.7 482 66.8
Lj1C785G15 Lonicera japonica HOM05D003877 ORTHO05D004647 1.9e-199 699.5 459 71.7
Lalb_Chr08g0231521 Lupinus albus HOM05D003877 ORTHO05D004647 1.9e-199 699.5 468 69.9
FAN06G1542 Fragaria x ananassa HOM05D003877 ORTHO05D004647 2.4e-199 699.1 482 66.6
Lsat_1_v5_gn_9_123441 Lactuca sativa HOM05D003877 ORTHO05D004647 2.4e-199 699.1 496 67.1
Gorai.012G079000 Gossypium raimondii HOM05D003877 ORTHO05D004647 3.2e-199 698.7 501 66.5
Cpa.g.sc19.135 Carica papaya HOM05D003877 ORTHO05D004647 5.4e-199 698.0 453 71.5
Duzib106G1591 Durio zibethinus HOM05D003877 ORTHO05D004647 2.1e-198 696.0 458 71.2
Gohir.A06G161800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.1e-198 696.0 500 65.6
TWI09G1304 Tripterygium wilfordii HOM05D003877 ORTHO05D004647 2.1e-198 696.0 451 71.6
FAN03G0426 Fragaria x ananassa HOM05D003877 ORTHO05D004647 3.5e-198 695.3 478 66.7
Glyma.05G080100 Glycine max HOM05D003877 ORTHO05D004647 3.5e-198 695.3 495 67.9
CANSAT56G2949 Cannabis sativa HOM05D003877 ORTHO05D004647 6.0e-198 694.5 505 66.3
Phvul.006G048800 Phaseolus vulgaris HOM05D003877 ORTHO05D004647 7.8e-198 694.1 487 67.8
QL08p063706 Quercus lobata HOM05D003877 ORTHO05D004647 1.0e-197 693.7 501 66.7
RcHm_v2.0_Chr1g0370931 Rosa chinensis HOM05D003877 ORTHO05D004647 1.3e-197 693.3 488 66.0
Gorai.010G195300 Gossypium raimondii HOM05D003877 ORTHO05D004647 2.3e-197 692.6 500 65.0
MSTRG.8927 Avicennia marina HOM05D003877 ORTHO05D004647 3.9e-197 691.8 499 67.7
Potri.008G072600 Populus trichocarpa HOM05D003877 ORTHO05D004647 5.1e-197 691.4 493 66.9
HanXRQChr08g0221971 Helianthus annuus HOM05D003877 ORTHO05D004647 1.9e-196 689.5 493 66.7
Gohir.D06G167400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 2.5e-196 689.1 500 64.8
Haze_17269 Corylus avellana HOM05D003877 ORTHO05D004647 1.6e-195 686.4 461 70.9
vmacro10004 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 1.6e-195 686.4 595 57.8
VMungo0540G0037 Vigna mungo HOM05D003877 ORTHO05D004647 1.6e-195 686.4 475 68.2
arahy.Tifrunner.gnm1.ann1.EHZF9M Arachis hypogaea HOM05D003877 ORTHO05D004647 2.8e-195 685.6 469 67.6
CiPaw.02G195400 Carya illinoinensis HOM05D003877 ORTHO05D004647 3.6e-195 685.3 472 69.9
Migut.F00639 Erythranthe guttata HOM05D003877 ORTHO05D004647 3.6e-195 685.3 480 69.0
Prupe.2G255400 Prunus persica HOM05D003877 ORTHO05D004647 4.7e-195 684.9 458 70.5
Lalb_Chr23g0277091 Lupinus albus HOM05D003877 ORTHO05D004647 1.4e-194 683.3 491 66.8
Hund13891 Selenicereus undatus HOM05D003877 ORTHO05D004647 2.4e-194 682.6 495 65.3
SGA_v2.0_scaffold2G01375 Striga asiatica HOM05D003877 ORTHO05D004647 5.2e-194 681.4 476 69.7
Potri.010G184600 Populus trichocarpa HOM05D003877 ORTHO05D004647 6.9e-194 681.0 491 65.8
Eucgr.G03086 Eucalyptus grandis HOM05D003877 ORTHO05D004647 1.5e-193 679.9 489 66.9
PGR142G4288 Punica granatum HOM05D003877 ORTHO05D004647 3.4e-193 678.7 499 65.5
arahy.Tifrunner.gnm1.ann1.ZCM4RK Arachis hypogaea HOM05D003877 ORTHO05D004647 5.8e-193 677.9 474 66.7
Manes.07G134500 Manihot esculenta HOM05D003877 ORTHO05D004647 2.9e-192 675.6 467 69.0
arahy.Tifrunner.gnm1.ann1.EJG72V Arachis hypogaea HOM05D003877 ORTHO05D004647 4.9e-192 674.9 474 66.2
Aqoxy1G01313 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.4e-191 671.4 469 67.0
Gohir.D04G070400 Gossypium hirsutum HOM05D003877 ORTHO05D004647 5.4e-191 671.4 474 67.3
ECA233G0637 Erigeron canadensis HOM05D003877 ORTHO05D004647 7.1e-191 671.0 463 68.0
CSS0004354 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 9.3e-191 670.6 434 72.8
Dinv21772 Davidia involucrata HOM05D003877 ORTHO05D004647 9.3e-191 670.6 420 75.5
AUR62022935 Chenopodium quinoa HOM05D003877 ORTHO05D004647 1.6e-190 669.8 502 62.5
Aqoxy2G01450 Aquilegia oxysepala HOM05D003877 ORTHO05D004647 5.1e-189 664.8 491 65.6
THA.LOC104810121 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 5.1e-189 664.8 482 64.9
AUR62012296 Chenopodium quinoa HOM05D003877 ORTHO05D004647 2.5e-188 662.5 502 62.4
Hund15887 Selenicereus undatus HOM05D003877 ORTHO05D004647 3.3e-188 662.1 474 65.2
Sp1g08500 Schrenkiella parvula HOM05D003877 ORTHO05D004647 1.3e-187 660.2 488 64.3
Carub.0001s0925 Capsella rubella HOM05D003877 ORTHO05D004647 1.6e-187 659.8 473 64.9
Sabra10G0141800 Salix brachista HOM05D003877 ORTHO05D004647 1.1e-186 657.1 528 60.2
Sc11g0005270 Simmondsia chinensis HOM05D003877 ORTHO05D004647 1.1e-186 657.1 463 66.5
Thhalv10007485m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 1.4e-186 656.8 473 64.3
AT1G09870 Arabidopsis thaliana HOM05D003877 ORTHO05D004647 9.0e-186 654.1 473 64.5
BraA06t23872Z Brassica rapa HOM05D003877 ORTHO05D004647 9.0e-186 654.1 488 62.9
EL10Ac2g04887 Beta vulgaris HOM05D003877 ORTHO05D004647 1.5e-185 653.3 493 63.3
SGA_v2.0_scaffold60G20966 Striga asiatica HOM05D003877 ORTHO05D004647 3.4e-185 652.1 533 61.7
AL1G20470 Arabidopsis lyrata HOM05D003877 ORTHO05D004647 1.7e-184 649.8 473 64.5
CARHR009900 Cardamine hirsuta HOM05D003877 ORTHO05D004647 2.9e-184 649.0 469 64.8
CSS0043221 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.9e-184 648.3 410 73.4
vmacro17691 Vaccinium macrocarpon HOM05D003877 ORTHO05D004647 4.9e-184 648.3 503 62.6
SGA_v2.0_scaffold85G26692 Striga asiatica HOM05D003877 ORTHO05D004647 1.4e-183 646.7 481 65.7
THA.LOC104824338 Tarenaya hassleriana HOM05D003877 ORTHO05D004647 4.2e-183 645.2 456 65.6
A06p06580 Brassica napus HOM05D003877 ORTHO05D004647 5.4e-183 644.8 488 62.3
Sed0008918 Sechium edule HOM05D003877 ORTHO05D004647 2.1e-182 642.9 494 62.3
Gohir.A05G331800 Gossypium hirsutum HOM05D003877 ORTHO05D004647 3.5e-182 642.1 458 67.0
BolC5t29551H Brassica oleracea HOM05D003877 ORTHO05D004647 4.6e-182 641.7 488 62.3
Ah.10g036260 Amaranthus hybridus HOM05D003877 ORTHO05D004647 2.3e-181 639.4 576 55.4
BcaC07g41857 Brassica carinata HOM05D003877 ORTHO05D004647 2.3e-181 639.4 470 64.0
C08p49240 Brassica napus HOM05D003877 ORTHO05D004647 2.3e-181 639.4 470 64.0
BolC8t52459H Brassica oleracea HOM05D003877 ORTHO05D004647 2.3e-181 639.4 470 64.0
C05p07990 Brassica napus HOM05D003877 ORTHO05D004647 3.0e-181 639.0 488 62.1
PSO801G0566 Papaver somniferum HOM05D003877 ORTHO05D004647 1.5e-180 636.7 467 63.2
Aa31LG1G5020 Aethionema arabicum HOM05D003877 ORTHO05D004647 3.7e-179 632.1 473 63.8
BraA09t41875Z Brassica rapa HOM05D003877 ORTHO05D004647 3.7e-179 632.1 488 61.3
A09p65300 Brassica napus HOM05D003877 ORTHO05D004647 6.2e-179 631.3 488 61.3
Sabra08G0053900 Salix brachista HOM05D003877 ORTHO05D004647 8.1e-179 630.9 517 60.2
BcaC05g24837 Brassica carinata HOM05D003877 ORTHO05D004647 1.4e-178 630.2 461 63.8
Solyc05g052480.4 Solanum lycopersicum HOM05D003877 ORTHO05D004647 6.9e-178 627.9 345 90.4
CSS0044757 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 4.5e-177 625.2 376 76.6
CsaV3_5G010390 Cucumis sativus L. HOM05D003877 ORTHO05D004647 7.6e-177 624.4 451 65.6
PSO349G0168 Papaver somniferum HOM05D003877 ORTHO05D004647 7.6e-177 624.4 475 62.1
MELO3C018375.2 Cucumis melo HOM05D003877 ORTHO05D004647 2.9e-176 622.5 500 60.6
SalBow3G1521 Salvia bowleyana HOM05D003877 ORTHO05D004647 9.3e-175 617.5 634 52.2
Os03g0818100 Oryza sativa ssp. japonica HOM05D003877 ORTHO05D004647 1.9e-172 609.8 509 59.5
ATR0068G102 Amborella trichopoda HOM05D003877 ORTHO05D004647 2.5e-172 609.4 489 59.3
CDE04G1002 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 7.4e-172 607.8 515 58.4
Prupe.6G130900 Prunus persica HOM05D003877 ORTHO05D004647 9.6e-172 607.4 486 61.3
PSO339G0345 Papaver somniferum HOM05D003877 ORTHO05D004647 2.4e-170 602.8 467 60.8
Psat5g130920 Pisum sativum HOM05D003877 ORTHO05D004647 2.4e-170 602.8 474 61.6
ClCG07G004500 Citrullus lanatus HOM05D003877 ORTHO05D004647 2.5e-167 592.8 472 61.0
Thhalv10002208m.g Eutrema salsugineum HOM05D003877 ORTHO05D004647 5.5e-167 591.7 416 64.9
Sed0009338 Sechium edule HOM05D003877 ORTHO05D004647 7.9e-166 587.8 460 62.4
Zm00001eb062330 Zea mays HOM05D003877 ORTHO05D004647 5.7e-164 581.6 486 60.1
Lsat_1_v5_gn_9_60880 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-162 576.6 438 62.6
ATR0681G014 Amborella trichopoda HOM05D003877 ORTHO05D004647 4.6e-158 562.0 432 62.7
MELO3C034227.2 Cucumis melo HOM05D003877 ORTHO05D004647 1.0e-157 560.8 507 56.0
Atru.chr12.96 Acer truncatum HOM05D003877 ORTHO05D004647 1.9e-156 556.6 426 62.0
unitig_16.g32857 Utricularia gibba HOM05D003877 ORTHO05D004647 5.0e-152 542.0 498 55.2
CsaV3_5G010430 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.9e-151 540.0 483 56.5
CsaV3_5G010400 Cucumis sativus L. HOM05D003877 ORTHO05D004647 1.0e-144 517.7 451 57.4
CSS0003433 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 8.2e-139 498.0 364 65.7
Mapoly0029s0098 Marchantia polymorpha HOM05D003877 ORTHO05D004647 8.8e-133 478.0 506 46.6
Pp3c24_6790 Physcomitrium patens HOM05D003877 ORTHO05D004647 1.3e-131 474.2 496 46.8
CDE06G2086 Ceratophyllum demersum HOM05D003877 ORTHO05D004647 2.7e-129 466.5 482 51.0
SMO271G0017 Selaginella moellendorffii HOM05D003877 ORTHO05D004647 6.5e-128 461.8 470 49.6
Pp3c8_15050 Physcomitrium patens HOM05D003877 ORTHO05D004647 2.2e-123 446.8 417 50.1
AagrBONN_evm.TU.Sc2ySwM_344.2788 Anthoceros agrestis HOM05D003877 ORTHO05D004647 7.3e-111 405.2 526 42.8
HPP92_019712 Vanilla planifolia HOM05D003877 ORTHO05D004647 1.3e-107 394.4 315 61.3
SalBow3G0419 Salvia bowleyana HOM05D003877 ORTHO05D004647 7.8e-105 385.2 262 70.6
unitig_8.g4098 Utricularia gibba HOM05D003877 ORTHO05D004647 4.9e-91 339.3 320 54.4
SalBow3G3178 Salvia bowleyana HOM05D003877 ORTHO05D004647 3.9e-80 303.1 215 67.9
CsaV3_2G012250 Cucumis sativus L. HOM05D003877 ORTHO05D004647 6.2e-70 269.2 212 62.3
SGA_v2.0_scaffold85G26702 Striga asiatica HOM05D003877 ORTHO05D004647 9.3e-58 228.8 213 54.9
SEGI_29662 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 1.6e-49 201.4 160 60.0
CBR_g38028 Chara braunii HOM05D003877 ORTHO05D004647 7.9e-41 172.6 326 33.4
TPR.G10202 Trifolium pratense HOM05D003877 ORTHO05D004647 2.0e-39 167.9 106 71.7
Cre13.g568600 Chlamydomonas reinhardtii HOM05D003877 ORTHO05D004647 1.4e-37 161.8 608 26.0
Manes.09G077219 Manihot esculenta HOM05D003877 ORTHO05D004647 9.1e-37 159.1 100 71.0
TAR626G1532 Trochodendron aralioides HOM05D003877 ORTHO05D004647 9.4e-34 149.1 149 54.4
Lsat_1_v5_gn_5_175980 Lactuca sativa HOM05D003877 ORTHO05D004647 1.8e-32 144.8 113 59.3
Manes.18G042850 Manihot esculenta HOM05D003877 ORTHO05D004647 4.1e-29 133.7 111 60.4
Manes.06G044901 Manihot esculenta HOM05D003877 ORTHO05D004647 7.0e-29 132.9 111 60.4
CsaV3_2G012240 Cucumis sativus L. HOM05D003877 ORTHO05D004647 5.5e-26 123.2 86 61.6
unitig_8.g4097 Utricularia gibba HOM05D003877 ORTHO05D004647 9.4e-26 122.5 99 60.6
SEGI_27537 Sequoiadendron giganteum HOM05D003877 ORTHO05D004647 5.2e-24 116.7 81 65.4
Nn5g28638 Nelumbo nucifera HOM05D003877 ORTHO05D004647 2.8e-22 110.9 71 69.0
TPR.G5082 Trifolium pratense HOM05D003877 ORTHO05D004647 5.3e-21 106.7 72 65.3
CSS0015783 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 1.0e-19 102.4 114 55.3
Nn7g36267 Nelumbo nucifera HOM05D003877 ORTHO05D004647 8.5e-19 99.4 62 71.0
Carub.0003s0920 Capsella rubella HOM05D000468 ORTHO05D114682 1.6e-17 95.1 119 47.9
CSS0003201 Camellia sinensis var. sinensis HOM05D003877 ORTHO05D004647 5.0e-11 73.6 60 60.0
TPR.G30156 Trifolium pratense HOM05D003877 ORTHO05D004647 1.9e-10 71.6 49 63.3
Manes.15G188901 Manihot esculenta HOM05D003877 ORTHO05D004647 2.5e-10 71.2 85 49.4
MELO3C018376.2 Cucumis melo HOM05D003877 ORTHO05D004647 4.2e-10 70.5 49 65.3
TPR.G5048 Trifolium pratense HOM05D003877 ORTHO05D004647 3.6e-09 67.4 72 50.0
MELO3C033083.2 Cucumis melo HOM05D003877 ORTHO05D034944 1.4e-08 65.5 42 71.4
Cfa026718 Carpinus fangiana HOM05D003877 ORTHO05D004647 2.3e-08 64.7 251 21.5


User provided reference genes

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