Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1264.4 Capsicum annuum HOM05D006885 ORTHO05D008606 1.6e-39 165.6 83 100.0
Peaxi162Scf00962g00024 Petunia axillaris HOM05D006885 ORTHO05D008606 8.2e-36 153.3 83 92.8
PGSC0003DMG400011888 Solanum tuberosum HOM05D006885 ORTHO05D008606 2.4e-35 151.8 83 91.6
Sopen01g005380 Solanum pennellii HOM05D006885 ORTHO05D008606 6.9e-35 150.2 83 86.7
Nitab4.5_0000913g0010 Nicotiana tabacum HOM05D006885 ORTHO05D008606 7.7e-34 146.7 83 91.6
Oeu011334.1 Olea europaea HOM05D006885 ORTHO05D008606 4.8e-28 127.5 72 84.7
Oeu044483.1 Olea europaea HOM05D006885 ORTHO05D008606 1.8e-27 125.6 81 75.3
Ciclev10033198m.g Citrus clementina HOM05D006885 ORTHO05D008606 2.0e-26 122.1 65 92.3
unitig_26.g10421 Utricularia gibba HOM05D006885 ORTHO05D008606 2.0e-26 122.1 68 83.8
Migut.K00992 Erythranthe guttata HOM05D006885 ORTHO05D008606 4.5e-26 120.9 70 82.9
Hma1.2p1_0459F.1_g157320 Hydrangea macrophylla HOM05D006885 ORTHO05D008606 7.7e-26 120.2 68 86.8
RcHm_v2.0_Chr4g0429451 Rosa chinensis HOM05D006885 ORTHO05D008606 1.0e-25 119.8 68 83.8
MSTRG.471 Avicennia marina HOM05D006885 ORTHO05D008606 1.3e-25 119.4 65 86.2
Duzib052G0936 Durio zibethinus HOM05D006885 ORTHO05D008606 1.3e-25 119.4 65 89.2
FvH4_4g23120 Fragaria vesca HOM05D006885 ORTHO05D008606 1.3e-25 119.4 68 83.8
FAN07G1762 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.3e-25 119.4 68 83.8
FAN12G2334 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.3e-25 119.4 68 83.8
FAN17G2783 Fragaria x ananassa HOM05D006885 ORTHO05D008606 1.3e-25 119.4 68 83.8
TWI75G1759 Tripterygium wilfordii HOM05D006885 ORTHO05D008606 2.2e-25 118.6 82 69.5
Manes.11G080000 Manihot esculenta HOM05D006885 ORTHO05D008606 2.9e-25 118.2 79 75.9
Gohir.A04G101300 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.8e-25 117.9 65 87.7
Gorai.012G125400 Gossypium raimondii HOM05D006885 ORTHO05D008606 3.8e-25 117.9 65 87.7
PGR119G0226 Punica granatum HOM05D006885 ORTHO05D008606 3.8e-25 117.9 75 78.7
Gohir.D04G140400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 6.5e-25 117.1 63 88.9
Dinv33305 Davidia involucrata HOM05D006885 ORTHO05D008606 1.1e-24 116.3 60 93.3
Manes.04G090052 Manihot esculenta HOM05D006885 ORTHO05D008606 1.5e-24 115.9 65 86.2
Duzib248G1150 Durio zibethinus HOM05D006885 ORTHO05D008606 2.5e-24 115.2 65 86.2
CiPaw.06G106900 Carya illinoinensis HOM05D006885 ORTHO05D008606 3.2e-24 114.8 76 76.3
CsaV3_6G007910 Cucumis sativus L. HOM05D006885 ORTHO05D008606 3.2e-24 114.8 68 80.9
Actinidia19564 Actinidia chinensis HOM05D006885 ORTHO05D008606 4.2e-24 114.4 69 81.2
CANSAT01G1896 Cannabis sativa HOM05D006885 ORTHO05D008606 7.2e-24 113.6 62 90.3
Cfa008736 Carpinus fangiana HOM05D000120 ORTHO05D000068 7.2e-24 113.6 61 91.8
CiPaw.05G104600 Carya illinoinensis HOM05D006885 ORTHO05D008606 7.2e-24 113.6 76 76.3
ECA232G0525 Erigeron canadensis HOM05D006885 ORTHO05D008606 7.2e-24 113.6 59 91.5
ClCG06G001860 Citrullus lanatus HOM05D006885 ORTHO05D008606 9.4e-24 113.2 61 88.5
TPR.G15605 Trifolium pratense HOM05D006885 ORTHO05D008606 9.4e-24 113.2 69 78.3
Cc11_g17420 Coffea canephora HOM05D006885 ORTHO05D008606 1.2e-23 112.8 68 83.8
Medtr3g074700 Medicago truncatula HOM05D006885 ORTHO05D008606 1.2e-23 112.8 69 76.8
Ca_06520_v3 Cicer arietinum L. HOM05D006885 ORTHO05D008606 1.6e-23 112.5 70 80.0
Eucgr.B03538 Eucalyptus grandis HOM05D006885 ORTHO05D008606 1.6e-23 112.5 76 75.0
TAR629G2182 Trochodendron aralioides HOM05D006885 ORTHO05D008606 2.1e-23 112.1 65 84.6
Sabra16G0207500 Salix brachista HOM05D006885 ORTHO05D008606 2.7e-23 111.7 79 73.4
Atru.chr11.2397 Acer truncatum HOM05D006885 ORTHO05D008606 4.7e-23 110.9 65 84.6
AUR62005687 Chenopodium quinoa HOM05D006885 ORTHO05D008606 4.7e-23 110.9 74 74.3
Prupe.1G220300 Prunus persica HOM05D006885 ORTHO05D008606 4.7e-23 110.9 77 72.7
SalBow2G1383 Salvia bowleyana HOM05D006885 ORTHO05D008606 4.7e-23 110.9 69 76.8
Sed0025765 Sechium edule HOM05D006885 ORTHO05D008606 4.7e-23 110.9 61 83.6
DCAR_024641 Daucus carota HOM05D006885 ORTHO05D008606 6.1e-23 110.5 65 80.0
AUR62028871 Chenopodium quinoa HOM05D006885 ORTHO05D008606 8.0e-23 110.2 68 77.9
Nn2g15930 Nelumbo nucifera HOM05D006885 ORTHO05D008606 8.0e-23 110.2 69 78.3
Potri.001G325000 Populus trichocarpa HOM05D006885 ORTHO05D008606 8.0e-23 110.2 79 72.2
Lsat_1_v5_gn_4_1780 Lactuca sativa HOM05D006885 ORTHO05D008606 1.0e-22 109.8 67 80.6
Thecc.02G198000 Theobroma cacao HOM05D006885 ORTHO05D008606 1.0e-22 109.8 65 86.2
Dinv25633 Davidia involucrata HOM05D006885 ORTHO05D008606 1.8e-22 109.0 68 79.4
Aqoxy5G03235 Aquilegia oxysepala HOM05D006885 ORTHO05D008606 2.3e-22 108.6 61 86.9
Lj6A834T26 Lonicera japonica HOM05D006885 ORTHO05D008606 5.2e-22 107.5 76 72.4
LjContig00312_ERROPOS870357g0004846 Lotus japonicus HOM05D006885 ORTHO05D008606 5.2e-22 107.5 76 73.7
CARHR027030 Cardamine hirsuta HOM05D006885 ORTHO05D008606 2.0e-21 105.5 79 67.1
Psat0s1880g0200 Pisum sativum HOM05D006885 ORTHO05D008606 2.0e-21 105.5 69 73.9
MD13G1125100 Malus domestica HOM05D006885 ORTHO05D008606 2.6e-21 105.1 56 91.1
MD16G1125900 Malus domestica HOM05D006885 ORTHO05D008606 2.6e-21 105.1 56 91.1
THA.LOC104825479 Tarenaya hassleriana HOM05D006885 ORTHO05D008606 2.6e-21 105.1 62 85.5
Phvul.008G000900 Phaseolus vulgaris HOM05D006885 ORTHO05D008606 3.3e-21 104.8 55 90.9
Aa31LG7G9990 Aethionema arabicum HOM05D006885 ORTHO05D008606 9.7e-21 103.2 60 83.3
Thhalv10009236m.g Eutrema salsugineum HOM05D006885 ORTHO05D008606 9.7e-21 103.2 75 70.7
Sp1g23670 Schrenkiella parvula HOM05D006885 ORTHO05D008606 9.7e-21 103.2 75 70.7
GSVIVG01000942001 Vitis vinifera HOM05D006885 ORTHO05D008606 1.3e-20 102.8 53 92.5
SGA_v2.0_scaffold9G04792 Striga asiatica HOM05D006885 ORTHO05D008606 2.2e-20 102.1 105 54.3
Glyma.08G361800 Glycine max HOM05D006885 ORTHO05D008606 2.8e-20 101.7 59 86.4
Lalb_Chr10g0091171 Lupinus albus HOM05D006885 ORTHO05D008606 2.8e-20 101.7 55 89.1
AT1G27435 Arabidopsis thaliana HOM05D006885 ORTHO05D008606 3.7e-20 101.3 75 68.0
Carub.0001s2598 Capsella rubella HOM05D006885 ORTHO05D008606 3.7e-20 101.3 67 77.6
Glyma.18G300000 Glycine max HOM05D006885 ORTHO05D008606 4.8e-20 100.9 63 82.5
BcaB03g13983 Brassica carinata HOM05D006885 ORTHO05D008606 6.3e-20 100.5 52 92.3
BcaC06g35293 Brassica carinata HOM05D006885 ORTHO05D008606 6.3e-20 100.5 52 92.3
C07p17740 Brassica napus HOM05D006885 ORTHO05D008606 6.3e-20 100.5 52 92.3
BolC7t42280H Brassica oleracea HOM05D006885 ORTHO05D008606 6.3e-20 100.5 52 92.3
AL1G40850 Arabidopsis lyrata HOM05D006885 ORTHO05D008606 8.2e-20 100.1 54 88.9
SalBow1G0427 Salvia bowleyana HOM05D006885 ORTHO05D008606 8.2e-20 100.1 62 75.8
EL10Ac6g13573 Beta vulgaris HOM05D006885 ORTHO05D008606 1.1e-19 99.8 55 85.5
A08p26290 Brassica napus HOM05D006885 ORTHO05D008606 1.1e-19 99.8 78 66.7
BraA08t34580Z Brassica rapa HOM05D006885 ORTHO05D008606 1.1e-19 99.8 78 66.7
CDE05G1244 Ceratophyllum demersum HOM05D006885 ORTHO05D008606 1.1e-19 99.8 59 81.4
Haze_11752 Corylus avellana HOM05D006885 ORTHO05D008606 1.1e-19 99.8 96 60.4
BcaC01g01613 Brassica carinata HOM05D006885 ORTHO05D008606 1.4e-19 99.4 65 75.4
BcaC01g06952 Brassica carinata HOM05D006885 ORTHO05D008606 1.4e-19 99.4 52 90.4
A07p11750 Brassica napus HOM05D006885 ORTHO05D008606 1.4e-19 99.4 52 90.4
C03p73770 Brassica napus HOM05D006885 ORTHO05D008606 1.4e-19 99.4 52 90.4
BolC3t19669H Brassica oleracea HOM05D006885 ORTHO05D008606 1.4e-19 99.4 65 75.4
BraA07t28960Z Brassica rapa HOM05D006885 ORTHO05D008606 1.4e-19 99.4 52 90.4
HPP92_021686 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.4e-19 98.6 70 65.7
ATR0582G111 Amborella trichopoda HOM05D006885 ORTHO05D008606 9.1e-19 96.7 64 78.1
PSO017G7113 Papaver somniferum HOM05D006885 ORTHO05D008606 9.1e-19 96.7 67 73.1
HPP92_021628 Vanilla planifolia HOM05D006885 ORTHO05D008606 2.0e-18 95.5 70 64.3
SHI04153 Sapria himalayana HOM05D006885 ORTHO05D008606 1.5e-16 89.4 65 72.3
Zm00001eb133070 Zea mays HOM05D006885 ORTHO05D008606 3.2e-16 88.2 77 58.4
Zm00001eb408880 Zea mays HOM05D006885 ORTHO05D008606 5.5e-16 87.4 67 61.2
MELO3C035240.2 Cucumis melo HOM05D006885 ORTHO05D008606 7.2e-16 87.0 63 71.4
QL03p050754 Quercus lobata HOM05D006885 ORTHO05D008606 9.4e-16 86.7 44 95.5
Hund25491 Selenicereus undatus HOM05D006885 ORTHO05D008606 1.2e-15 86.3 44 93.2
Ah.03g135790 Amaranthus hybridus HOM05D006885 ORTHO05D008606 2.1e-15 85.5 44 90.9
Dinv09126 Davidia involucrata HOM05D006885 ORTHO05D008606 2.7e-15 85.1 49 85.7
CSS0038255 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 4.7e-15 84.3 44 93.2
HanXRQChr03g0067371 Helianthus annuus HOM05D006885 ORTHO05D008606 4.0e-14 81.3 44 86.4
Sc11g0000250 Simmondsia chinensis HOM05D006885 ORTHO05D008606 4.0e-14 81.3 42 92.9
MBI12_g28748_MAGBIO Magnolia biondii HOM05D006885 ORTHO05D008606 6.8e-14 80.5 45 84.4
CSS0039361 Camellia sinensis var. sinensis HOM05D006885 ORTHO05D008606 8.3e-12 73.6 37 94.6
Gorai.001G210600 Gossypium raimondii HOM05D006885 ORTHO05D008606 1.4e-11 72.8 49 75.5
Gohir.D07G189020 Gossypium hirsutum HOM05D006885 ORTHO05D008606 4.1e-11 71.2 49 73.5
Pp3c6_10000 Physcomitrium patens HOM05D006885 ORTHO05D008606 2.0e-10 68.9 67 56.7
AagrBONN_evm.TU.Sc2ySwM_362.2152 Anthoceros agrestis HOM05D006885 ORTHO05D008606 2.5e-08 62.0 69 52.2
Gohir.A06G101502 Gossypium hirsutum HOM05D006885 ORTHO05D008606 3.2e-08 61.6 43 67.4
Gohir.D02G113400 Gossypium hirsutum HOM05D006885 ORTHO05D008606 2.7e-07 58.5 32 84.4
Gorai.005G128300 Gossypium raimondii HOM05D006885 ORTHO05D008606 2.7e-07 58.5 32 84.4
Mapoly0027s0032 Marchantia polymorpha HOM05D006885 ORTHO05D008606 2.7e-07 58.5 68 51.5
TPR.G7690 Trifolium pratense HOM05D006885 ORTHO05D008606 4.7e-07 57.8 28 92.9
Ah.02g131100 Amaranthus hybridus HOM05D006885 ORTHO05D008606 8.8e-06 53.5 34 73.5


User provided reference genes

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