Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1263.14 Capsicum annuum HOM05D005487 ORTHO05D007280 5.1e-259 897.1 422 100.0
PGSC0003DMG400023608 Solanum tuberosum HOM05D005487 ORTHO05D007280 6.5e-238 827.0 422 93.1
Sopen04g006840 Solanum pennellii HOM05D005487 ORTHO05D007280 2.5e-237 825.1 422 92.4
Solyc04g014730.4 Solanum lycopersicum HOM05D005487 ORTHO05D007280 4.5e-231 804.3 413 92.0
Peaxi162Scf00442g00414 Petunia axillaris HOM05D005487 ORTHO05D007280 1.7e-225 785.8 457 82.9
CSS0007892 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 2.0e-207 725.7 420 79.8
Oeu044422.1 Olea europaea HOM05D005487 ORTHO05D007280 1.0e-206 723.4 420 80.0
Nn1g07355 Nelumbo nucifera HOM05D005487 ORTHO05D007280 1.0e-203 713.4 420 77.6
Cc09_g00910 Coffea canephora HOM05D005487 ORTHO05D007280 5.2e-203 711.1 419 78.3
MSTRG.16025 Avicennia marina HOM05D005487 ORTHO05D007280 2.0e-202 709.1 420 78.1
QL05p069756 Quercus lobata HOM05D005487 ORTHO05D007280 1.4e-200 703.0 421 77.7
HanXRQChr10g0284101 Helianthus annuus HOM05D005487 ORTHO05D007280 3.1e-200 701.8 420 76.7
Hma1.2p1_0135F.1_g061730 Hydrangea macrophylla HOM05D005487 ORTHO05D007280 3.1e-200 701.8 420 77.1
Nitab4.5_0000143g0260 Nicotiana tabacum HOM05D005487 ORTHO05D007280 4.1e-200 701.4 420 77.9
Dinv07399 Davidia involucrata HOM05D005487 ORTHO05D007280 5.4e-200 701.0 401 81.0
TWI38G0871 Tripterygium wilfordii HOM05D005487 ORTHO05D007280 2.7e-199 698.7 420 77.1
Cfa000109 Carpinus fangiana HOM05D005487 ORTHO05D007280 3.5e-199 698.4 419 77.1
Lj2C262G3 Lonicera japonica HOM05D005487 ORTHO05D007280 5.9e-199 697.6 414 78.0
Nitab4.5_0001198g0060 Nicotiana tabacum HOM05D005487 ORTHO05D007280 5.9e-199 697.6 420 77.9
CiPaw.10G077700 Carya illinoinensis HOM05D005487 ORTHO05D007280 7.8e-199 697.2 419 76.8
Actinidia11881 Actinidia chinensis HOM05D005487 ORTHO05D007280 1.7e-198 696.0 419 77.1
TAR629G3393 Trochodendron aralioides HOM05D005487 ORTHO05D007280 1.7e-198 696.0 420 75.7
Actinidia26862 Actinidia chinensis HOM05D005487 ORTHO05D007280 2.9e-198 695.3 419 76.8
Potri.006G009200 Populus trichocarpa HOM05D005487 ORTHO05D007280 6.6e-198 694.1 420 76.9
EL10Ac8g20177 Beta vulgaris HOM05D005487 ORTHO05D007280 2.5e-197 692.2 420 75.5
CAN.G1186.29 Capsicum annuum HOM05D005487 ORTHO05D007280 3.3e-197 691.8 420 77.1
Manes.09G070300 Manihot esculenta HOM05D005487 ORTHO05D007280 4.3e-197 691.4 419 76.6
Nn1g03329 Nelumbo nucifera HOM05D005487 ORTHO05D007280 9.5e-197 690.3 419 75.9
Lsat_1_v5_gn_8_64401 Lactuca sativa HOM05D005487 ORTHO05D007280 1.2e-196 689.9 424 76.7
Solyc11g012160.2 Solanum lycopersicum HOM05D005487 ORTHO05D007280 2.1e-196 689.1 420 76.9
TAR724G0004 Trochodendron aralioides HOM05D005487 ORTHO05D007280 2.1e-196 689.1 420 75.7
SalBow8G2024 Salvia bowleyana HOM05D005487 ORTHO05D007280 2.8e-196 688.7 419 75.7
Sopen11g006950 Solanum pennellii HOM05D005487 ORTHO05D007280 6.1e-196 687.6 420 76.9
Thecc.06G232800 Theobroma cacao HOM05D005487 ORTHO05D007280 1.8e-195 686.0 419 75.7
FvH4_3g01030 Fragaria vesca HOM05D005487 ORTHO05D007280 2.3e-195 685.6 420 76.0
Sed0025030 Sechium edule HOM05D005487 ORTHO05D007280 4.0e-195 684.9 420 73.6
GSVIVG01003351001 Vitis vinifera HOM05D005487 ORTHO05D007280 1.2e-194 683.3 419 75.9
PGR004G0814 Punica granatum HOM05D005487 ORTHO05D007280 2.0e-194 682.6 420 74.5
Atru.chr1.2460 Acer truncatum HOM05D005487 ORTHO05D007280 2.6e-194 682.2 420 75.2
Peaxi162Scf00558g00518 Petunia axillaris HOM05D005487 ORTHO05D007280 2.6e-194 682.2 460 71.3
Rhsim13G0146300 Rhododendron simsii HOM05D005487 ORTHO05D007280 3.4e-194 681.8 447 72.0
RcHm_v2.0_Chr5g0001571 Rosa chinensis HOM05D005487 ORTHO05D007280 4.4e-194 681.4 418 76.1
AL1G23300 Arabidopsis lyrata HOM05D005487 ORTHO05D007280 5.7e-194 681.0 419 74.0
BcaB02g06431 Brassica carinata HOM05D005487 ORTHO05D007280 5.7e-194 681.0 419 74.2
FAN21G2054 Fragaria x ananassa HOM05D005487 ORTHO05D007280 5.7e-194 681.0 420 75.2
Cpa.g.sc75.119 Carica papaya HOM05D005487 ORTHO05D007280 7.5e-194 680.6 421 74.1
Duzib192G1033 Durio zibethinus HOM05D005487 ORTHO05D007280 7.5e-194 680.6 418 75.6
Aqoxy1G04106 Aquilegia oxysepala HOM05D005487 ORTHO05D007280 1.3e-193 679.9 422 75.1
AT1G12050 Arabidopsis thaliana HOM05D005487 ORTHO05D007280 1.7e-193 679.5 419 74.2
Prupe.4G011100 Prunus persica HOM05D005487 ORTHO05D007280 1.7e-193 679.5 420 74.5
RhsimUnG0109400 Rhododendron simsii HOM05D005487 ORTHO05D007280 2.9e-193 678.7 447 71.8
MBI19_g29429_MAGBIO Magnolia biondii HOM05D005487 ORTHO05D007280 3.7e-193 678.3 419 74.2
CANSAT56G2574 Cannabis sativa HOM05D005487 ORTHO05D007280 1.8e-192 676.0 418 75.1
Ciclev10015367m.g Citrus clementina HOM05D005487 ORTHO05D007280 1.8e-192 676.0 419 74.9
Thhalv10007724m.g Eutrema salsugineum HOM05D005487 ORTHO05D007280 5.4e-192 674.5 418 73.9
MD10G1331100 Malus domestica HOM05D005487 ORTHO05D007280 5.4e-192 674.5 419 74.2
Sp1g10720 Schrenkiella parvula HOM05D005487 ORTHO05D007280 5.4e-192 674.5 418 73.7
CARHR012410 Cardamine hirsuta HOM05D005487 ORTHO05D007280 2.0e-191 672.5 418 72.7
BolC5t29858H Brassica oleracea HOM05D005487 ORTHO05D007280 3.5e-191 671.8 418 73.4
arahy.Tifrunner.gnm1.ann1.61KG5W Arachis hypogaea HOM05D005487 ORTHO05D007280 2.3e-190 669.1 419 71.8
ClCG01G021500 Citrullus lanatus HOM05D005487 ORTHO05D007280 3.9e-190 668.3 421 73.6
AUR62021869 Chenopodium quinoa HOM05D005487 ORTHO05D007280 5.0e-190 667.9 420 74.3
Gohir.A06G205600 Gossypium hirsutum HOM05D005487 ORTHO05D007280 6.6e-190 667.5 418 73.2
Gorai.010G250300 Gossypium raimondii HOM05D005487 ORTHO05D007280 6.6e-190 667.5 418 73.2
THA.LOC104809472 Tarenaya hassleriana HOM05D005487 ORTHO05D007280 6.6e-190 667.5 418 73.7
Carub.0001s1173 Capsella rubella HOM05D005487 ORTHO05D007280 1.1e-189 666.8 418 72.5
arahy.Tifrunner.gnm1.ann1.8PBE23 Arachis hypogaea HOM05D005487 ORTHO05D007280 1.5e-189 666.4 419 71.6
Gohir.D06G215900 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.3e-189 665.2 418 73.0
COL.COLO4_31878 Corchorus olitorius HOM05D005487 ORTHO05D007280 5.6e-189 664.5 416 73.6
CsaV3_6G048520 Cucumis sativus L. HOM05D005487 ORTHO05D007280 9.5e-189 663.7 420 74.0
MELO3C007433.2 Cucumis melo HOM05D005487 ORTHO05D007280 1.2e-188 663.3 421 73.9
PSO764G0115 Papaver somniferum HOM05D005487 ORTHO05D007280 1.2e-188 663.3 420 73.8
SGA_v2.0_scaffold7G03757 Striga asiatica HOM05D005487 ORTHO05D007280 2.8e-188 662.1 430 73.5
Lalb_Chr15g0087971 Lupinus albus HOM05D005487 ORTHO05D007280 1.4e-187 659.8 418 72.0
PSO210G3736 Papaver somniferum HOM05D005487 ORTHO05D007280 1.4e-187 659.8 419 73.5
Aa31LG1G2680 Aethionema arabicum HOM05D005487 ORTHO05D007280 2.3e-187 659.1 418 71.5
Gohir.A05G174500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 5.2e-187 657.9 418 73.0
Gorai.009G182900 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.2e-186 656.8 418 73.0
Eucgr.L00543 Eucalyptus grandis HOM05D005487 ORTHO05D007280 2.6e-186 655.6 453 68.7
PGSC0003DMG400013273 Solanum tuberosum HOM05D005487 ORTHO05D007280 4.4e-186 654.8 505 64.2
Phvul.006G143500 Phaseolus vulgaris HOM05D005487 ORTHO05D007280 2.9e-185 652.1 418 71.3
Lj6g0015557 Lotus japonicus HOM05D005487 ORTHO05D007280 3.7e-185 651.7 417 71.2
Gohir.D05G177500 Gossypium hirsutum HOM05D005487 ORTHO05D007280 4.9e-185 651.4 418 72.5
VMungo0540G1792 Vigna mungo HOM05D005487 ORTHO05D007280 8.3e-185 650.6 418 71.1
Ca_00719_v3 Cicer arietinum L. HOM05D005487 ORTHO05D007280 1.4e-184 649.8 417 70.7
Glyma.15G114300 Glycine max HOM05D005487 ORTHO05D007280 4.1e-184 648.3 418 70.1
Psat1g176520 Pisum sativum HOM05D005487 ORTHO05D007280 5.4e-184 647.9 418 69.6
HPP92_003014 Vanilla planifolia HOM05D005487 ORTHO05D007280 5.4e-184 647.9 425 70.8
ATR1101G021 Amborella trichopoda HOM05D005487 ORTHO05D007280 2.7e-183 645.6 420 71.7
TPR.G13057 Trifolium pratense HOM05D005487 ORTHO05D007280 4.6e-183 644.8 418 70.1
vmacro03645 Vaccinium macrocarpon HOM05D005487 ORTHO05D007280 1.0e-182 643.7 409 74.6
HPP92_027542 Vanilla planifolia HOM05D005487 ORTHO05D007280 1.0e-182 643.7 426 70.7
BcaC05g25225 Brassica carinata HOM05D005487 ORTHO05D007280 1.3e-182 643.3 404 73.0
Glyma.09G010000 Glycine max HOM05D005487 ORTHO05D007280 1.3e-182 643.3 418 70.3
C05p11110 Brassica napus HOM05D005487 ORTHO05D007280 3.0e-182 642.1 404 73.0
Medtr2g025640 Medicago truncatula HOM05D005487 ORTHO05D007280 5.0e-182 641.3 417 69.1
FAN25G0861 Fragaria x ananassa HOM05D005487 ORTHO05D007280 6.6e-182 641.0 398 75.1
A06p09440 Brassica napus HOM05D005487 ORTHO05D007280 8.6e-182 640.6 403 73.2
unitig_0.g999 Utricularia gibba HOM05D005487 ORTHO05D007280 1.1e-181 640.2 384 76.6
BraA06t24129Z Brassica rapa HOM05D005487 ORTHO05D007280 1.9e-181 639.4 403 73.0
Haze_06922 Corylus avellana HOM05D005487 ORTHO05D007280 7.5e-178 627.5 432 69.9
Hund23409 Selenicereus undatus HOM05D005487 ORTHO05D007280 7.5e-178 627.5 396 72.5
Zm00001eb236160 Zea mays HOM05D005487 ORTHO05D007280 1.3e-177 626.7 419 66.3
CDE07G0927 Ceratophyllum demersum HOM05D005487 ORTHO05D007280 4.9e-177 624.8 427 68.9
Os02g0196800 Oryza sativa ssp. japonica HOM05D005487 ORTHO05D007280 1.2e-175 620.2 419 65.9
Haze_06917 Corylus avellana HOM05D005487 ORTHO05D007280 2.7e-175 619.0 456 66.0
DCAR_027826 Daucus carota HOM05D005487 ORTHO05D007280 1.5e-170 603.2 419 69.0
Sabra06G0007000 Salix brachista HOM05D005487 ORTHO05D007280 3.3e-165 585.5 420 68.1
AUR62012785 Chenopodium quinoa HOM05D005487 ORTHO05D007280 1.5e-162 576.6 402 68.9
Migut.M01391 Erythranthe guttata HOM05D005487 ORTHO05D007280 7.3e-157 557.8 420 65.7
Mapoly0022s0035 Marchantia polymorpha HOM05D005487 ORTHO05D007280 1.3e-156 557.0 417 61.9
Pp3c4_7990 Physcomitrium patens HOM05D005487 ORTHO05D007280 1.5e-154 550.1 419 61.6
SMO137G0224 Selaginella moellendorffii HOM05D005487 ORTHO05D007280 1.7e-153 546.6 418 62.0
Duzib235G0086 Durio zibethinus HOM05D005487 ORTHO05D007280 5.4e-152 541.6 371 69.3
AagrBONN_evm.TU.Sc2ySwM_344.3343 Anthoceros agrestis HOM05D005487 ORTHO05D007280 6.0e-151 538.1 420 61.9
Zm00001eb205930 Zea mays HOM05D005487 ORTHO05D007280 1.8e-150 536.6 358 66.5
Sc17g0007720 Simmondsia chinensis HOM05D005487 ORTHO05D007280 3.0e-150 535.8 300 80.0
CSS0007230 Camellia sinensis var. sinensis HOM05D005487 ORTHO05D007280 7.4e-149 531.2 439 62.2
Ah.09g234260 Amaranthus hybridus HOM05D005487 ORTHO05D007280 4.9e-145 518.5 420 62.6
Pp3c13_16620 Physcomitrium patens HOM05D005487 ORTHO05D007280 2.0e-138 496.5 360 64.4
Haze_26411 Corylus avellana HOM05D005487 ORTHO05D007280 2.7e-135 486.1 422 54.5
ECA236G3803 Erigeron canadensis HOM05D005487 ORTHO05D007280 1.4e-128 463.8 269 78.8
Cre17.g732802 Chlamydomonas reinhardtii HOM05D005487 ORTHO05D007280 7.7e-122 441.4 470 48.5
RcHm_v2.0_Chr3g0484131 Rosa chinensis HOM05D005487 ORTHO05D007280 1.3e-121 440.7 468 51.9
RcHm_v2.0_Chr3g0477951 Rosa chinensis HOM05D005487 ORTHO05D007280 2.9e-121 439.5 472 51.9
CBR_g46703 Chara braunii HOM05D005487 ORTHO05D007280 5.5e-120 435.3 468 47.9
PRCOL_00001448 Prasinoderma coloniale HOM05D005487 ORTHO05D007280 4.7e-111 405.6 422 49.8
Gorai.001G209700 Gossypium raimondii HOM05D005487 ORTHO05D007280 1.0e-41 175.3 115 67.0
RcHm_v2.0_Chr5g0003621 Rosa chinensis HOM05D005487 ORTHO05D007280 6.9e-30 136.0 82 75.6
Gohir.D07G188750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 8.4e-28 129.0 115 53.0
SEGI_36702 Sequoiadendron giganteum HOM05D005487 ORTHO05D007280 2.7e-26 124.0 93 63.4
C06p15210 Brassica napus HOM05D005487 ORTHO05D042797 3.3e-24 117.1 90 63.3
BolC6t36696H Brassica oleracea HOM05D005487 ORTHO05D042797 3.3e-24 117.1 90 63.3
COL.COLO4_27266 Corchorus olitorius HOM05D000025 ORTHO05D000040 1.2e-18 98.6 138 43.5
Gohir.D13G151750 Gossypium hirsutum HOM05D005487 ORTHO05D007280 3.7e-15 87.0 55 69.1
BcaC08g44100 Brassica carinata HOM05D005487 ORTHO05D027150 1.2e-13 82.0 70 57.1
BolC9t55424H Brassica oleracea HOM05D005487 ORTHO05D027150 3.4e-13 80.5 68 58.8
BcaC04g21976 Brassica carinata HOM05D005487 ORTHO05D027150 1.0e-12 79.0 71 54.9
C09p25260 Brassica napus HOM05D005487 ORTHO05D027150 3.2e-11 73.9 66 56.1
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 2.4e-06 57.8 121 30.6
SEGI_21127 Sequoiadendron giganteum HOM05D000023 ORTHO05D000014 3.1e-06 57.4 66 45.5
TAR381G0287 Trochodendron aralioides HOM05D005487 ORTHO05D415274 3.1e-06 57.4 36 63.9
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 5.3e-06 56.6 121 32.2


User provided reference genes

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