Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CAN.G1263.12 Capsicum annuum HOM05D005610 ORTHO05D006181 1.9e-65 252.3 123 100.0
Nitab4.5_0001701g0220 Nicotiana tabacum HOM05D005610 ORTHO05D006181 6.8e-63 243.8 123 96.7
Peaxi162Scf00442g00523 Petunia axillaris HOM05D005610 ORTHO05D006181 1.5e-62 242.7 123 96.7
Sopen04g006810 Solanum pennellii HOM05D005610 ORTHO05D006181 1.5e-62 242.7 123 95.9
Nitab4.5_0018980g0020 Nicotiana tabacum HOM05D005610 ORTHO05D006181 3.4e-62 241.5 122 95.9
Solyc04g014700.4 Solanum lycopersicum HOM05D005610 ORTHO05D006181 3.4e-62 241.5 123 95.1
PGSC0003DMG400023560 Solanum tuberosum HOM05D005610 ORTHO05D006181 4.4e-62 241.1 123 95.1
Nitab4.5_0008006g0060 Nicotiana tabacum HOM05D005610 ORTHO05D006181 9.9e-62 240.0 122 95.1
Nitab4.5_0001867g0090 Nicotiana tabacum HOM05D005610 ORTHO05D006181 9.2e-60 233.4 123 94.3
Cc00_g15270 Coffea canephora HOM05D005610 ORTHO05D006181 3.1e-55 218.4 114 91.2
Dinv13959 Davidia involucrata HOM05D005610 ORTHO05D006181 2.2e-53 212.2 115 87.0
Cc09_g00980 Coffea canephora HOM05D005610 ORTHO05D006181 4.9e-53 211.1 115 87.0
SalBow8G2682 Salvia bowleyana HOM05D005610 ORTHO05D006181 2.4e-52 208.8 114 86.8
QL10p003579 Quercus lobata HOM05D005610 ORTHO05D006181 7.1e-52 207.2 114 87.7
Oeu054255.1 Olea europaea HOM05D005610 ORTHO05D006181 9.3e-52 206.8 115 87.8
SGA_v2.0_scaffold4G01884 Striga asiatica HOM05D005610 ORTHO05D006181 1.6e-51 206.1 111 87.4
Duzib235G0930 Durio zibethinus HOM05D005610 ORTHO05D006181 2.1e-51 205.7 113 85.8
SGA_v2.0_scaffold7G03768 Striga asiatica HOM05D005610 ORTHO05D006181 2.1e-51 205.7 111 87.4
Migut.H01600 Erythranthe guttata HOM05D005610 ORTHO05D006181 2.7e-51 205.3 111 86.5
Gohir.A06G152700 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.7e-51 205.3 113 85.0
Thecc.06G231600 Theobroma cacao HOM05D005610 ORTHO05D006181 7.8e-51 203.8 111 86.5
Haze_06904 Corylus avellana HOM05D005610 ORTHO05D006181 1.0e-50 203.4 112 83.9
Cpa.g.sc152.66 Carica papaya HOM05D005610 ORTHO05D006181 1.3e-50 203.0 114 82.5
COL.COLO4_31865 Corchorus olitorius HOM05D005610 ORTHO05D006181 1.3e-50 203.0 111 86.5
ClCG07G002910 Citrullus lanatus HOM05D005610 ORTHO05D006181 2.3e-50 202.2 112 83.0
MELO3C008876.2 Cucumis melo HOM05D005610 ORTHO05D006181 3.0e-50 201.8 117 79.5
Gorai.010G185800 Gossypium raimondii HOM05D005610 ORTHO05D006181 3.0e-50 201.8 113 84.1
Oeu052223.1 Olea europaea HOM05D005610 ORTHO05D006181 3.0e-50 201.8 115 85.2
Actinidia26870 Actinidia chinensis HOM05D005610 ORTHO05D006181 5.1e-50 201.1 115 82.6
ClCG01G011300 Citrullus lanatus HOM05D005610 ORTHO05D006181 5.1e-50 201.1 117 79.5
Thecc.10G134700 Theobroma cacao HOM05D005610 ORTHO05D006181 5.1e-50 201.1 111 83.8
Prupe.8G115200 Prunus persica HOM05D005610 ORTHO05D006181 6.6e-50 200.7 114 82.5
GSVIVG01008189001 Vitis vinifera HOM05D005610 ORTHO05D006181 8.7e-50 200.3 114 82.5
MD10G1088300 Malus domestica HOM05D005610 ORTHO05D006181 1.1e-49 199.9 114 83.3
CsaV3_4G031690 Cucumis sativus L. HOM05D005610 ORTHO05D006181 1.5e-49 199.5 117 77.8
ECA238G1057 Erigeron canadensis HOM05D005610 ORTHO05D006181 1.5e-49 199.5 112 83.9
Thecc.10G135500 Theobroma cacao HOM05D005610 ORTHO05D006181 1.5e-49 199.5 111 82.9
MSTRG.13119 Avicennia marina HOM05D005610 ORTHO05D006181 2.5e-49 198.7 116 81.9
Duzib160G0112 Durio zibethinus HOM05D005610 ORTHO05D006181 2.5e-49 198.7 113 81.4
Atru.chr1.2482 Acer truncatum HOM05D005610 ORTHO05D006181 3.3e-49 198.4 112 83.0
EL10Ac4g08756 Beta vulgaris HOM05D005610 ORTHO05D006181 5.6e-49 197.6 112 86.6
Prupe.8G114900 Prunus persica HOM05D005610 ORTHO05D006181 5.6e-49 197.6 114 81.6
PGR142G4331 Punica granatum HOM05D005610 ORTHO05D006181 5.6e-49 197.6 115 81.7
Ciclev10017234m.g Citrus clementina HOM05D005610 ORTHO05D006181 7.3e-49 197.2 109 86.2
CiPaw.10G076800 Carya illinoinensis HOM05D005610 ORTHO05D006181 9.6e-49 196.8 114 81.6
TWI38G1154 Tripterygium wilfordii HOM05D005610 ORTHO05D006181 9.6e-49 196.8 112 83.9
CSS0047184 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.3e-48 196.4 115 80.9
vmacro03652 Vaccinium macrocarpon HOM05D005610 ORTHO05D006181 1.6e-48 196.1 115 79.1
Sed0027170 Sechium edule HOM05D005610 ORTHO05D006181 2.8e-48 195.3 112 80.4
PSO210G2880 Papaver somniferum HOM05D005610 ORTHO05D006181 3.6e-48 194.9 114 79.8
CANSAT01G2220 Cannabis sativa HOM05D005610 ORTHO05D006181 4.8e-48 194.5 114 78.1
HanXRQChr05g0129341 Helianthus annuus HOM05D005610 ORTHO05D006181 6.2e-48 194.1 114 78.1
RcHm_v2.0_Chr6g0259461 Rosa chinensis HOM05D005610 ORTHO05D006181 8.1e-48 193.7 114 80.7
FAN15G0825 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.1e-47 193.4 114 79.8
Hund25163 Selenicereus undatus HOM05D005610 ORTHO05D006181 1.4e-47 193.0 118 78.0
AUR62014294 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.0e-47 191.4 115 80.0
AUR62034142 Chenopodium quinoa HOM05D005610 ORTHO05D006181 4.0e-47 191.4 112 82.1
FvH4_2g07070 Fragaria vesca HOM05D005610 ORTHO05D006181 4.0e-47 191.4 114 78.9
TAR624G0514 Trochodendron aralioides HOM05D005610 ORTHO05D006181 4.0e-47 191.4 112 82.1
Ca_13393_v3 Cicer arietinum L. HOM05D005610 ORTHO05D006181 1.2e-46 189.9 114 79.8
Eucgr.B02596 Eucalyptus grandis HOM05D005610 ORTHO05D006181 1.5e-46 189.5 115 77.4
Medtr1g023330 Medicago truncatula HOM05D005610 ORTHO05D006181 4.5e-46 188.0 115 77.4
Aa31LG5G10530 Aethionema arabicum HOM05D005610 ORTHO05D006181 5.8e-46 187.6 111 77.5
Aqoxy4G02780 Aquilegia oxysepala HOM05D005610 ORTHO05D006181 5.8e-46 187.6 111 81.1
Medtr8g106470 Medicago truncatula HOM05D005610 ORTHO05D006181 5.8e-46 187.6 115 79.1
Glyma.19G169600 Glycine max HOM05D005610 ORTHO05D006181 7.6e-46 187.2 114 77.2
PSO302G0046 Papaver somniferum HOM05D005610 ORTHO05D006181 7.6e-46 187.2 111 78.4
arahy.Tifrunner.gnm1.ann1.PD4MQY Arachis hypogaea HOM05D005610 ORTHO05D006181 1.3e-45 186.4 114 77.2
CDE04G2721 Ceratophyllum demersum HOM05D005610 ORTHO05D006181 2.2e-45 185.7 112 75.9
Phvul.004G117800 Phaseolus vulgaris HOM05D005610 ORTHO05D006181 2.2e-45 185.7 114 76.3
arahy.Tifrunner.gnm1.ann1.IYUI89 Arachis hypogaea HOM05D003989 ORTHO05D004626 3.8e-45 184.9 114 76.3
Lj4g0017663 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-45 184.5 114 76.3
Lj5g0020791 Lotus japonicus HOM05D005610 ORTHO05D006181 4.9e-45 184.5 114 76.3
Thhalv10022365m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 8.4e-45 183.7 115 72.2
Glyma.03G168300 Glycine max HOM05D005610 ORTHO05D006181 8.4e-45 183.7 114 74.6
BcaC09g47662 Brassica carinata HOM05D005610 ORTHO05D006181 1.9e-44 182.6 111 74.8
Lalb_Chr04g0257231 Lupinus albus HOM05D005610 ORTHO05D006181 2.4e-44 182.2 116 75.0
unitig_748.g7924 Utricularia gibba HOM05D000772 ORTHO05D006181 2.4e-44 182.2 109 78.0
BNapus_Darmor_BZH_scaffold_133p00040 Brassica napus HOM05D005610 ORTHO05D006181 3.2e-44 181.8 111 74.8
BraA01t04664Z Brassica rapa HOM05D005610 ORTHO05D006181 3.2e-44 181.8 111 74.8
Sp3g00630 Schrenkiella parvula HOM05D005610 ORTHO05D006181 4.2e-44 181.4 111 73.9
Carub.0003s0067 Capsella rubella HOM05D005610 ORTHO05D006181 5.4e-44 181.0 111 74.8
CARHR075530 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.4e-44 181.0 111 75.7
THA.LOC104822382 Tarenaya hassleriana HOM05D005610 ORTHO05D006181 5.4e-44 181.0 115 73.9
AL3G10740 Arabidopsis lyrata HOM05D005610 ORTHO05D006181 1.6e-43 179.5 111 74.8
AT3G01435 Arabidopsis thaliana HOM05D005610 ORTHO05D006181 1.6e-43 179.5 111 73.9
Manes.16G001300 Manihot esculenta HOM05D005610 ORTHO05D006181 2.7e-43 178.7 112 75.9
VMungo0464G1641 Vigna mungo HOM05D005610 ORTHO05D006181 7.9e-43 177.2 138 64.5
Nn8g38603 Nelumbo nucifera HOM05D005610 ORTHO05D006181 1.3e-42 176.4 114 75.4
Sabra04G0000600 Salix brachista HOM05D005610 ORTHO05D006181 2.3e-42 175.6 120 70.0
A05p44570 Brassica napus HOM05D005610 ORTHO05D006181 6.7e-42 174.1 111 72.1
BraA05t23199Z Brassica rapa HOM05D005610 ORTHO05D006181 6.7e-42 174.1 111 72.1
Potri.004G001600 Populus trichocarpa HOM05D005610 ORTHO05D006181 8.7e-42 173.7 117 70.9
Thhalv10022907m.g Eutrema salsugineum HOM05D005610 ORTHO05D006181 2.5e-41 172.2 126 65.9
BolC5t35148H Brassica oleracea HOM05D005610 ORTHO05D006181 7.4e-41 170.6 111 71.2
Lsat_1_v5_gn_7_13401 Lactuca sativa HOM05D005610 ORTHO05D006181 7.4e-41 170.6 101 76.2
Lj6g0026774 Lotus japonicus HOM05D005610 ORTHO05D006181 9.6e-41 170.2 112 68.8
BolC1t05956H Brassica oleracea HOM05D005610 ORTHO05D006181 2.8e-40 168.7 132 62.1
Ah.06g187910 Amaranthus hybridus HOM05D005610 ORTHO05D006181 3.7e-40 168.3 100 79.0
C09p75160 Brassica napus HOM05D005610 ORTHO05D006181 8.1e-40 167.2 111 70.3
ATR1153G018 Amborella trichopoda HOM05D005610 ORTHO05D006181 2.6e-38 162.2 108 70.4
Zm00001eb234830 Zea mays HOM05D005610 ORTHO05D006181 2.9e-37 158.7 105 70.5
ATR0723G088 Amborella trichopoda HOM05D005610 ORTHO05D006181 3.8e-37 158.3 108 69.4
SEGI_23772 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.7e-35 152.1 108 69.4
HPP92_003728 Vanilla planifolia HOM05D005610 ORTHO05D006181 7.9e-35 150.6 107 64.5
Gohir.D06G159100 Gossypium hirsutum HOM05D005610 ORTHO05D006181 2.3e-34 149.1 83 80.7
Zm00001eb206370 Zea mays HOM05D005610 ORTHO05D006181 3.0e-34 148.7 111 64.0
Os02g0189100 Oryza sativa ssp. japonica HOM05D005610 ORTHO05D006181 1.1e-33 146.7 105 64.8
MBI19_g29445_MAGBIO Magnolia biondii HOM05D005610 ORTHO05D006181 1.5e-33 146.4 132 58.3
CSS0025052 Camellia sinensis var. sinensis HOM05D005610 ORTHO05D006181 1.9e-33 146.0 85 76.5
Dinv29757 Davidia involucrata HOM05D005610 ORTHO05D006181 7.4e-33 144.1 74 93.2
FAN24G2055 Fragaria x ananassa HOM05D005610 ORTHO05D006181 2.1e-32 142.5 84 76.2
Psat6g005240 Pisum sativum HOM05D005610 ORTHO05D006181 6.2e-32 141.0 109 68.8
HanXRQChr15g0470051 Helianthus annuus HOM05D005610 ORTHO05D006181 6.9e-31 137.5 88 76.1
TAR626G0207 Trochodendron aralioides HOM05D005610 ORTHO05D006181 9.0e-31 137.1 177 45.8
Pp3c10_18150 Physcomitrium patens HOM05D005610 ORTHO05D006181 6.5e-29 131.0 107 57.0
Thecc.10G135300 Theobroma cacao HOM05D005610 ORTHO05D006181 3.2e-28 128.6 70 87.1
Mapoly0014s0199 Marchantia polymorpha HOM05D005610 ORTHO05D006181 9.3e-28 127.1 110 52.7
Actinidia02323 Actinidia chinensis HOM05D005610 ORTHO05D006181 2.1e-27 125.9 67 83.6
SMO200G0153 Selaginella moellendorffii HOM05D005610 ORTHO05D006181 1.0e-26 123.6 109 49.5
BNapus_Darmor_BZH_scaffold_119p00050 Brassica napus HOM05D005610 ORTHO05D006181 6.7e-26 120.9 75 74.7
BNapus_Darmor_BZH_scaffold_97p00380 Brassica napus HOM05D005610 ORTHO05D006181 6.7e-26 120.9 75 74.7
Eucgr.K02585 Eucalyptus grandis HOM05D005610 ORTHO05D006181 4.3e-25 118.2 70 80.0
FAN27G3428 Fragaria x ananassa HOM05D005610 ORTHO05D006181 4.8e-24 114.8 74 71.6
Zm00001eb004040 Zea mays HOM05D005610 ORTHO05D006181 5.3e-23 111.3 72 66.7
CBR_g27782 Chara braunii HOM05D005610 ORTHO05D001468 3.4e-22 108.6 119 46.2
Rhsim13G0147700 Rhododendron simsii HOM05D005610 ORTHO05D006181 1.4e-20 103.2 61 80.3
FAN20G1916 Fragaria x ananassa HOM05D005610 ORTHO05D006181 1.6e-19 99.8 57 77.2
AagrBONN_evm.TU.Sc2ySwM_228.3334 Anthoceros agrestis HOM05D005610 ORTHO05D006181 2.1e-19 99.4 135 37.8
Pp3c3_34050 Physcomitrium patens HOM05D005610 ORTHO05D006181 6.1e-19 97.8 78 59.0
TPR.G7342 Trifolium pratense HOM05D005610 ORTHO05D006181 3.0e-18 95.5 56 76.8
Sc16g0007910 Simmondsia chinensis HOM05D005610 ORTHO05D006181 2.5e-17 92.4 52 84.6
RcHm_v2.0_Chr7g0240721 Rosa chinensis HOM05D005610 ORTHO05D006181 2.2e-13 79.3 48 79.2
RcHm_v2.0_Chr7g0240711 Rosa chinensis HOM05D005610 ORTHO05D006181 5.0e-13 78.2 52 69.2
Migut.M01383 Erythranthe guttata HOM05D005610 ORTHO05D006181 3.9e-10 68.6 58 58.6
SEGI_27415 Sequoiadendron giganteum HOM05D005610 ORTHO05D006181 2.0e-09 66.2 60 55.0
CARHR125830 Cardamine hirsuta HOM05D005610 ORTHO05D006181 5.3e-07 58.2 38 63.2


User provided reference genes

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